EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012306 (Gene tree)
Gene ID: 103045421
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 35978 bases
Position: chrAPWO02002080.1:455023-491000
Accession: 103045421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012679	Npa1	PF11707.8	3.7e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012679	-	7189	XM_022664017	ENSAMXP00000012679	2216 (aa)	XP_022519738	W5KYL7

Gene Model

Click here to download ENSAMXG00000012306's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012306	urb1	98	40.374	ENSG00000142207	URB1	99	40.141	Homo_sapiens
ENSAMXG00000012306	urb1	99	48.073	ENSAPOG00000020308	urb1	99	48.339	Acanthochromis_polyacanthus
ENSAMXG00000012306	urb1	99	39.640	ENSAMEG00000011998	URB1	99	39.710	Ailuropoda_melanoleuca
ENSAMXG00000012306	urb1	94	48.378	ENSACIG00000003248	urb1	96	48.331	Amphilophus_citrinellus
ENSAMXG00000012306	urb1	97	48.694	ENSAOCG00000010364	urb1	99	49.096	Amphiprion_ocellaris
ENSAMXG00000012306	urb1	97	56.270	ENSAPEG00000010758	urb1	99	56.270	Amphiprion_percula
ENSAMXG00000012306	urb1	99	48.052	ENSATEG00000011790	urb1	99	48.052	Anabas_testudineus
ENSAMXG00000012306	urb1	96	42.275	ENSAPLG00000012791	URB1	99	42.275	Anas_platyrhynchos
ENSAMXG00000012306	urb1	99	40.259	ENSACAG00000002817	URB1	99	40.416	Anolis_carolinensis
ENSAMXG00000012306	urb1	99	39.991	ENSANAG00000024617	URB1	99	39.868	Aotus_nancymaae
ENSAMXG00000012306	urb1	99	48.924	ENSACLG00000024865	urb1	99	48.924	Astatotilapia_calliptera
ENSAMXG00000012306	urb1	99	39.657	ENSBTAG00000012412	URB1	99	40.114	Bos_taurus
ENSAMXG00000012306	urb1	99	39.974	ENSCJAG00000009118	URB1	99	39.772	Callithrix_jacchus
ENSAMXG00000012306	urb1	99	39.180	ENSCAFG00000008892	URB1	99	39.267	Canis_familiaris
ENSAMXG00000012306	urb1	99	39.413	ENSCAFG00020025987	-	99	39.256	Canis_lupus_dingo
ENSAMXG00000012306	urb1	99	38.684	ENSCAFG00020025994	-	99	38.772	Canis_lupus_dingo
ENSAMXG00000012306	urb1	99	39.623	ENSCHIG00000015645	URB1	99	39.719	Capra_hircus
ENSAMXG00000012306	urb1	99	40.106	ENSTSYG00000013286	URB1	99	40.088	Carlito_syrichta
ENSAMXG00000012306	urb1	98	39.183	ENSCAPG00000015589	URB1	99	39.295	Cavia_aperea
ENSAMXG00000012306	urb1	99	39.685	ENSCPOG00000006748	URB1	99	39.685	Cavia_porcellus
ENSAMXG00000012306	urb1	99	39.929	ENSCCAG00000021299	URB1	99	39.798	Cebus_capucinus
ENSAMXG00000012306	urb1	99	40.229	ENSCATG00000042630	URB1	99	40.219	Cercocebus_atys
ENSAMXG00000012306	urb1	99	40.370	ENSCLAG00000005262	URB1	99	40.458	Chinchilla_lanigera
ENSAMXG00000012306	urb1	99	39.755	ENSCSAG00000009584	URB1	99	39.773	Chlorocebus_sabaeus
ENSAMXG00000012306	urb1	99	41.801	ENSCPBG00000006454	URB1	99	41.707	Chrysemys_picta_bellii
ENSAMXG00000012306	urb1	99	40.317	ENSCANG00000031088	URB1	99	40.245	Colobus_angolensis_palliatus
ENSAMXG00000012306	urb1	98	40.309	ENSCGRG00001010616	Urb1	99	40.193	Cricetulus_griseus_chok1gshd
ENSAMXG00000012306	urb1	98	40.285	ENSCGRG00000015840	Urb1	99	40.268	Cricetulus_griseus_crigri
ENSAMXG00000012306	urb1	97	53.608	ENSCSEG00000012616	urb1	99	53.608	Cynoglossus_semilaevis
ENSAMXG00000012306	urb1	99	53.586	ENSCVAG00000009076	urb1	97	53.586	Cyprinodon_variegatus
ENSAMXG00000012306	urb1	99	53.853	ENSDARG00000060308	urb1	100	53.829	Danio_rerio
ENSAMXG00000012306	urb1	85	43.740	ENSDNOG00000015586	URB1	99	43.798	Dasypus_novemcinctus
ENSAMXG00000012306	urb1	99	39.894	ENSDORG00000006735	Urb1	99	39.938	Dipodomys_ordii
ENSAMXG00000012306	urb1	90	52.381	ENSETEG00000009080	URB1	90	52.381	Echinops_telfairi
ENSAMXG00000012306	urb1	99	39.001	ENSEASG00005007711	URB1	98	40.995	Equus_asinus_asinus
ENSAMXG00000012306	urb1	95	48.630	ENSECAG00000013206	URB1	97	48.253	Equus_caballus
ENSAMXG00000012306	urb1	53	53.112	ENSEEUG00000003626	-	52	53.112	Erinaceus_europaeus
ENSAMXG00000012306	urb1	99	49.847	ENSELUG00000020516	urb1	99	50.066	Esox_lucius
ENSAMXG00000012306	urb1	99	39.842	ENSFCAG00000002177	URB1	99	40.070	Felis_catus
ENSAMXG00000012306	urb1	98	38.182	ENSFALG00000004636	URB1	98	38.410	Ficedula_albicollis
ENSAMXG00000012306	urb1	98	40.573	ENSFDAG00000007288	URB1	94	40.675	Fukomys_damarensis
ENSAMXG00000012306	urb1	100	46.336	ENSFHEG00000000202	urb1	100	50.640	Fundulus_heteroclitus
ENSAMXG00000012306	urb1	93	48.197	ENSGMOG00000001838	urb1	93	48.637	Gadus_morhua
ENSAMXG00000012306	urb1	99	41.305	ENSGALG00000015887	URB1	99	41.604	Gallus_gallus
ENSAMXG00000012306	urb1	99	48.148	ENSGAFG00000020694	urb1	98	48.429	Gambusia_affinis
ENSAMXG00000012306	urb1	99	49.422	ENSGACG00000011703	urb1	99	49.510	Gasterosteus_aculeatus
ENSAMXG00000012306	urb1	99	41.703	ENSGAGG00000022544	URB1	99	41.609	Gopherus_agassizii
ENSAMXG00000012306	urb1	99	40.325	ENSGGOG00000000285	URB1	99	40.185	Gorilla_gorilla
ENSAMXG00000012306	urb1	99	48.968	ENSHBUG00000001904	urb1	99	48.968	Haplochromis_burtoni
ENSAMXG00000012306	urb1	99	38.738	ENSHGLG00000004907	URB1	98	39.037	Heterocephalus_glaber_female
ENSAMXG00000012306	urb1	99	39.005	ENSHGLG00100010749	URB1	99	39.355	Heterocephalus_glaber_male
ENSAMXG00000012306	urb1	70	58.880	ENSHCOG00000018683	urb1	98	59.459	Hippocampus_comes
ENSAMXG00000012306	urb1	99	58.956	ENSIPUG00000014721	urb1	100	58.824	Ictalurus_punctatus
ENSAMXG00000012306	urb1	99	39.982	ENSSTOG00000004539	URB1	99	39.851	Ictidomys_tridecemlineatus
ENSAMXG00000012306	urb1	99	45.623	ENSKMAG00000006001	urb1	98	50.899	Kryptolebias_marmoratus
ENSAMXG00000012306	urb1	96	46.746	ENSLBEG00000027208	urb1	98	46.746	Labrus_bergylta
ENSAMXG00000012306	urb1	99	40.927	ENSLACG00000017059	URB1	99	40.949	Latimeria_chalumnae
ENSAMXG00000012306	urb1	99	46.789	ENSLOCG00000009190	urb1	100	46.702	Lepisosteus_oculatus
ENSAMXG00000012306	urb1	99	40.945	ENSLAFG00000010407	URB1	99	40.911	Loxodonta_africana
ENSAMXG00000012306	urb1	99	40.132	ENSMFAG00000034391	URB1	96	40.061	Macaca_fascicularis
ENSAMXG00000012306	urb1	99	40.176	ENSMMUG00000010295	URB1	99	40.105	Macaca_mulatta
ENSAMXG00000012306	urb1	99	39.578	ENSMNEG00000032981	URB1	99	39.553	Macaca_nemestrina
ENSAMXG00000012306	urb1	99	40.193	ENSMLEG00000041435	URB1	99	40.210	Mandrillus_leucophaeus
ENSAMXG00000012306	urb1	99	47.703	ENSMAMG00000011238	urb1	99	47.571	Mastacembelus_armatus
ENSAMXG00000012306	urb1	97	55.556	ENSMZEG00005011862	urb1	99	55.556	Maylandia_zebra
ENSAMXG00000012306	urb1	98	40.935	ENSMGAG00000014512	URB1	99	41.339	Meleagris_gallopavo
ENSAMXG00000012306	urb1	91	48.030	ENSMAUG00000010516	Urb1	99	46.715	Mesocricetus_auratus
ENSAMXG00000012306	urb1	99	40.350	ENSMICG00000016424	URB1	99	40.218	Microcebus_murinus
ENSAMXG00000012306	urb1	100	38.899	ENSMOCG00000012613	Urb1	99	39.125	Microtus_ochrogaster
ENSAMXG00000012306	urb1	99	39.738	ENSMODG00000021076	URB1	99	39.938	Monodelphis_domestica
ENSAMXG00000012306	urb1	99	48.611	ENSMALG00000017411	urb1	96	49.744	Monopterus_albus
ENSAMXG00000012306	urb1	99	39.930	MGP_CAROLIEiJ_G0020948	Urb1	99	39.860	Mus_caroli
ENSAMXG00000012306	urb1	99	39.974	ENSMUSG00000039929	Urb1	99	39.974	Mus_musculus
ENSAMXG00000012306	urb1	99	40.070	MGP_PahariEiJ_G0016653	Urb1	99	40.000	Mus_pahari
ENSAMXG00000012306	urb1	99	40.009	MGP_SPRETEiJ_G0021854	Urb1	99	39.939	Mus_spretus
ENSAMXG00000012306	urb1	99	39.842	ENSMPUG00000001123	URB1	99	39.806	Mustela_putorius_furo
ENSAMXG00000012306	urb1	99	39.232	ENSNGAG00000001905	Urb1	99	39.444	Nannospalax_galili
ENSAMXG00000012306	urb1	81	48.681	ENSNBRG00000001049	urb1	99	48.681	Neolamprologus_brichardi
ENSAMXG00000012306	urb1	98	39.260	ENSNLEG00000026872	URB1	99	39.171	Nomascus_leucogenys
ENSAMXG00000012306	urb1	88	52.083	ENSMEUG00000010828	URB1	94	37.580	Notamacropus_eugenii
ENSAMXG00000012306	urb1	99	38.728	ENSOPRG00000013482	URB1	98	38.832	Ochotona_princeps
ENSAMXG00000012306	urb1	99	39.947	ENSODEG00000002587	URB1	99	39.860	Octodon_degus
ENSAMXG00000012306	urb1	99	49.362	ENSONIG00000005599	urb1	99	49.276	Oreochromis_niloticus
ENSAMXG00000012306	urb1	99	40.353	ENSOCUG00000009381	URB1	98	40.526	Oryctolagus_cuniculus
ENSAMXG00000012306	urb1	99	47.510	ENSORLG00000003429	urb1	99	47.991	Oryzias_latipes
ENSAMXG00000012306	urb1	99	47.491	ENSORLG00020013785	urb1	99	47.971	Oryzias_latipes_hni
ENSAMXG00000012306	urb1	97	48.337	ENSORLG00015019421	urb1	99	48.283	Oryzias_latipes_hsok
ENSAMXG00000012306	urb1	79	51.462	ENSOMEG00000002094	urb1	99	58.607	Oryzias_melastigma
ENSAMXG00000012306	urb1	99	39.956	ENSOGAG00000017140	URB1	99	39.877	Otolemur_garnettii
ENSAMXG00000012306	urb1	88	42.907	ENSOARG00000013679	URB1	92	42.450	Ovis_aries
ENSAMXG00000012306	urb1	99	40.167	ENSPPAG00000003423	URB1	99	40.097	Pan_paniscus
ENSAMXG00000012306	urb1	99	39.780	ENSPPRG00000023131	URB1	99	39.886	Panthera_pardus
ENSAMXG00000012306	urb1	88	40.768	ENSPTIG00000016125	URB1	94	40.697	Panthera_tigris_altaica
ENSAMXG00000012306	urb1	99	40.167	ENSPTRG00000013852	URB1	99	40.097	Pan_troglodytes
ENSAMXG00000012306	urb1	99	40.193	ENSPANG00000021964	URB1	99	40.210	Papio_anubis
ENSAMXG00000012306	urb1	99	49.218	ENSPKIG00000003683	urb1	98	49.307	Paramormyrops_kingsleyae
ENSAMXG00000012306	urb1	99	40.009	ENSPEMG00000021205	Urb1	98	39.938	Peromyscus_maniculatus_bairdii
ENSAMXG00000012306	urb1	77	31.910	ENSPMAG00000009733	URB1	99	32.363	Petromyzon_marinus
ENSAMXG00000012306	urb1	99	39.250	ENSPCIG00000016350	URB1	99	39.882	Phascolarctos_cinereus
ENSAMXG00000012306	urb1	96	48.713	ENSPLAG00000004371	urb1	99	48.822	Poecilia_latipinna
ENSAMXG00000012306	urb1	99	49.246	ENSPMEG00000006634	urb1	99	49.531	Poecilia_mexicana
ENSAMXG00000012306	urb1	99	49.026	ENSPREG00000013453	urb1	99	49.043	Poecilia_reticulata
ENSAMXG00000012306	urb1	98	40.533	ENSPPYG00000011359	URB1	99	40.300	Pongo_abelii
ENSAMXG00000012306	urb1	99	37.194	ENSPCAG00000007430	URB1	99	37.440	Procavia_capensis
ENSAMXG00000012306	urb1	99	39.790	ENSPCOG00000022695	URB1	99	39.965	Propithecus_coquereli
ENSAMXG00000012306	urb1	99	39.421	ENSPVAG00000000889	URB1	99	39.303	Pteropus_vampyrus
ENSAMXG00000012306	urb1	99	47.895	ENSPNYG00000010589	urb1	99	47.895	Pundamilia_nyererei
ENSAMXG00000012306	urb1	100	67.730	ENSPNAG00000019324	urb1	100	67.730	Pygocentrus_nattereri
ENSAMXG00000012306	urb1	99	39.746	ENSRNOG00000002080	Urb1	99	39.842	Rattus_norvegicus
ENSAMXG00000012306	urb1	99	40.167	ENSRBIG00000033122	URB1	99	40.210	Rhinopithecus_bieti
ENSAMXG00000012306	urb1	99	40.193	ENSRROG00000040237	URB1	99	40.236	Rhinopithecus_roxellana
ENSAMXG00000012306	urb1	99	39.762	ENSSBOG00000027672	URB1	99	39.588	Saimiri_boliviensis_boliviensis
ENSAMXG00000012306	urb1	99	39.485	ENSSHAG00000005140	URB1	99	39.725	Sarcophilus_harrisii
ENSAMXG00000012306	urb1	93	51.335	ENSSFOG00015000339	urb1	99	51.525	Scleropages_formosus
ENSAMXG00000012306	urb1	99	49.889	ENSSMAG00000003782	urb1	99	49.933	Scophthalmus_maximus
ENSAMXG00000012306	urb1	99	49.824	ENSSDUG00000012313	urb1	99	49.824	Seriola_dumerili
ENSAMXG00000012306	urb1	99	50.000	ENSSLDG00000023179	urb1	99	50.000	Seriola_lalandi_dorsalis
ENSAMXG00000012306	urb1	99	40.794	ENSSPUG00000012447	URB1	99	40.629	Sphenodon_punctatus
ENSAMXG00000012306	urb1	99	49.274	ENSSPAG00000006325	urb1	99	49.532	Stegastes_partitus
ENSAMXG00000012306	urb1	99	39.692	ENSSSCG00000032024	URB1	99	39.656	Sus_scrofa
ENSAMXG00000012306	urb1	74	43.854	ENSTGUG00000013442	URB1	100	43.854	Taeniopygia_guttata
ENSAMXG00000012306	urb1	99	49.352	ENSTRUG00000009372	urb1	99	49.397	Takifugu_rubripes
ENSAMXG00000012306	urb1	99	47.845	ENSTNIG00000016277	urb1	99	47.797	Tetraodon_nigroviridis
ENSAMXG00000012306	urb1	76	43.252	ENSTBEG00000010044	URB1	76	43.252	Tupaia_belangeri
ENSAMXG00000012306	urb1	88	45.455	ENSTTRG00000007712	URB1	91	45.064	Tursiops_truncatus
ENSAMXG00000012306	urb1	99	39.209	ENSUAMG00000012231	URB1	99	39.570	Ursus_americanus
ENSAMXG00000012306	urb1	88	41.145	ENSUMAG00000017419	URB1	94	41.243	Ursus_maritimus
ENSAMXG00000012306	urb1	64	60.563	ENSVPAG00000001164	URB1	65	60.563	Vicugna_pacos
ENSAMXG00000012306	urb1	99	39.921	ENSVVUG00000000551	URB1	99	39.894	Vulpes_vulpes
ENSAMXG00000012306	urb1	99	41.586	ENSXETG00000009895	urb1	98	41.630	Xenopus_tropicalis
ENSAMXG00000012306	urb1	97	59.184	ENSXCOG00000005500	urb1	99	59.184	Xiphophorus_couchianus
ENSAMXG00000012306	urb1	97	59.694	ENSXMAG00000007253	urb1	99	59.694	Xiphophorus_maculatus