EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000012367 (Gene tree)
Gene ID: 103022558
Gene Symbol: chd1l
Alias: zgc:56084
Full Name: chromodomain helicase DNA binding protein 1 like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 23733 bases
Position: chr13:38972588-38996320
Accession: 103022558
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030360	ResIII	PF04851.15	3.1e-10	1	1
ENSAMXP00000012757	ResIII	PF04851.15	6.8e-07	1	1
ENSAMXP00000030360	DEAD	PF00270.29	1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012757	-	2964	-	ENSAMXP00000012757	987 (aa)	-	W5KYU5
ENSAMXT00000034488	-	2994	XM_022675815	ENSAMXP00000030360	997 (aa)	XP_022531536	-

Gene Model

Click here to download ENSAMXG00000012367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000012367	chd1l	50	39.929	ENSAMXG00000002088	hells	85	39.929
ENSAMXG00000012367	chd1l	53	43.431	ENSAMXG00000011227	smarca1	62	43.654
ENSAMXG00000012367	chd1l	54	43.455	ENSAMXG00000005709	smarca5	53	43.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012367	chd1l	85	60.424	ENSG00000131778	CHD1L	99	59.350	Homo_sapiens
ENSAMXG00000012367	chd1l	97	62.045	ENSAPOG00000001539	chd1l	99	65.940	Acanthochromis_polyacanthus
ENSAMXG00000012367	chd1l	86	59.379	ENSAMEG00000017063	CHD1L	97	59.379	Ailuropoda_melanoleuca
ENSAMXG00000012367	chd1l	84	65.493	ENSACIG00000001164	chd1l	97	65.731	Amphilophus_citrinellus
ENSAMXG00000012367	chd1l	100	60.904	ENSAOCG00000014510	chd1l	100	61.335	Amphiprion_ocellaris
ENSAMXG00000012367	chd1l	86	63.573	ENSAPEG00000017450	chd1l	95	63.573	Amphiprion_percula
ENSAMXG00000012367	chd1l	87	62.729	ENSAPEG00000017573	chd1l	96	62.887	Amphiprion_percula
ENSAMXG00000012367	chd1l	100	60.176	ENSATEG00000013058	chd1l	100	60.372	Anabas_testudineus
ENSAMXG00000012367	chd1l	83	58.621	ENSAPLG00000009976	CHD1L	95	58.072	Anas_platyrhynchos
ENSAMXG00000012367	chd1l	86	57.432	ENSACAG00000017686	CHD1L	100	57.111	Anolis_carolinensis
ENSAMXG00000012367	chd1l	84	60.613	ENSANAG00000024347	CHD1L	97	59.633	Aotus_nancymaae
ENSAMXG00000012367	chd1l	95	62.971	ENSACLG00000019304	chd1l	99	63.252	Astatotilapia_calliptera
ENSAMXG00000012367	chd1l	86	59.054	ENSBTAG00000020831	CHD1L	98	58.371	Bos_taurus
ENSAMXG00000012367	chd1l	85	60.164	ENSCJAG00000002406	CHD1L	97	59.450	Callithrix_jacchus
ENSAMXG00000012367	chd1l	90	55.592	ENSCAFG00000010944	CHD1L	98	56.610	Canis_familiaris
ENSAMXG00000012367	chd1l	90	56.813	ENSCAFG00020020121	CHD1L	99	57.848	Canis_lupus_dingo
ENSAMXG00000012367	chd1l	88	58.797	ENSCHIG00000013871	CHD1L	99	58.797	Capra_hircus
ENSAMXG00000012367	chd1l	83	60.932	ENSTSYG00000003005	CHD1L	99	60.752	Carlito_syrichta
ENSAMXG00000012367	chd1l	87	57.355	ENSCPOG00000009000	CHD1L	99	57.095	Cavia_porcellus
ENSAMXG00000012367	chd1l	84	58.678	ENSCCAG00000036079	CHD1L	96	57.986	Cebus_capucinus
ENSAMXG00000012367	chd1l	85	59.813	ENSCATG00000031044	CHD1L	97	59.336	Cercocebus_atys
ENSAMXG00000012367	chd1l	86	58.428	ENSCLAG00000000880	CHD1L	99	58.539	Chinchilla_lanigera
ENSAMXG00000012367	chd1l	85	60.047	ENSCSAG00000018386	CHD1L	97	59.565	Chlorocebus_sabaeus
ENSAMXG00000012367	chd1l	86	60.436	ENSCPBG00000002600	CHD1L	99	59.933	Chrysemys_picta_bellii
ENSAMXG00000012367	chd1l	85	59.789	ENSCANG00000020239	CHD1L	97	58.971	Colobus_angolensis_palliatus
ENSAMXG00000012367	chd1l	86	59.060	ENSCGRG00001021624	Chd1l	99	58.362	Cricetulus_griseus_chok1gshd
ENSAMXG00000012367	chd1l	82	59.832	ENSCGRG00000007554	Chd1l	99	59.096	Cricetulus_griseus_crigri
ENSAMXG00000012367	chd1l	95	60.766	ENSCVAG00000002595	chd1l	98	60.829	Cyprinodon_variegatus
ENSAMXG00000012367	chd1l	99	65.463	ENSDARG00000015471	chd1l	99	65.916	Danio_rerio
ENSAMXG00000012367	chd1l	87	60.092	ENSDNOG00000019504	CHD1L	97	60.206	Dasypus_novemcinctus
ENSAMXG00000012367	chd1l	87	56.419	ENSDORG00000013555	Chd1l	96	57.192	Dipodomys_ordii
ENSAMXG00000012367	chd1l	80	55.221	ENSETEG00000008445	CHD1L	89	56.007	Echinops_telfairi
ENSAMXG00000012367	chd1l	65	48.968	ENSEBUG00000005791	chd1l	86	49.713	Eptatretus_burgeri
ENSAMXG00000012367	chd1l	85	60.140	ENSEASG00005007364	CHD1L	99	60.391	Equus_asinus_asinus
ENSAMXG00000012367	chd1l	85	60.140	ENSECAG00000008915	CHD1L	99	60.391	Equus_caballus
ENSAMXG00000012367	chd1l	100	53.158	ENSELUG00000016844	chd1l	99	53.704	Esox_lucius
ENSAMXG00000012367	chd1l	85	60.118	ENSFCAG00000007777	CHD1L	98	58.983	Felis_catus
ENSAMXG00000012367	chd1l	88	56.208	ENSFALG00000006087	CHD1L	98	56.433	Ficedula_albicollis
ENSAMXG00000012367	chd1l	83	59.833	ENSFDAG00000012431	CHD1L	99	59.112	Fukomys_damarensis
ENSAMXG00000012367	chd1l	99	60.338	ENSFHEG00000012420	chd1l	100	59.921	Fundulus_heteroclitus
ENSAMXG00000012367	chd1l	86	58.102	ENSGALG00000015038	CHD1L	98	57.384	Gallus_gallus
ENSAMXG00000012367	chd1l	99	60.390	ENSGAFG00000018198	chd1l	99	62.761	Gambusia_affinis
ENSAMXG00000012367	chd1l	51	67.589	ENSGACG00000014042	chd1l	97	67.589	Gasterosteus_aculeatus
ENSAMXG00000012367	chd1l	86	60.367	ENSGAGG00000014432	CHD1L	99	60.367	Gopherus_agassizii
ENSAMXG00000012367	chd1l	85	60.000	ENSGGOG00000001067	CHD1L	96	59.538	Gorilla_gorilla
ENSAMXG00000012367	chd1l	95	62.971	ENSHBUG00000007464	chd1l	98	64.605	Haplochromis_burtoni
ENSAMXG00000012367	chd1l	86	58.891	ENSHGLG00000008933	CHD1L	98	58.116	Heterocephalus_glaber_female
ENSAMXG00000012367	chd1l	82	58.065	ENSHGLG00100007155	CHD1L	99	57.159	Heterocephalus_glaber_male
ENSAMXG00000012367	chd1l	84	63.108	ENSHCOG00000012787	chd1l	92	63.615	Hippocampus_comes
ENSAMXG00000012367	chd1l	100	64.883	ENSIPUG00000022617	chd1l	100	65.467	Ictalurus_punctatus
ENSAMXG00000012367	chd1l	88	54.791	ENSSTOG00000007032	CHD1L	99	54.977	Ictidomys_tridecemlineatus
ENSAMXG00000012367	chd1l	100	59.882	ENSKMAG00000014358	chd1l	100	59.921	Kryptolebias_marmoratus
ENSAMXG00000012367	chd1l	98	61.182	ENSLBEG00000023845	chd1l	99	63.475	Labrus_bergylta
ENSAMXG00000012367	chd1l	98	53.426	ENSLACG00000006262	CHD1L	97	53.724	Latimeria_chalumnae
ENSAMXG00000012367	chd1l	99	60.934	ENSLOCG00000010574	chd1l	99	60.534	Lepisosteus_oculatus
ENSAMXG00000012367	chd1l	85	57.259	ENSLAFG00000018136	CHD1L	99	57.259	Loxodonta_africana
ENSAMXG00000012367	chd1l	84	59.857	ENSMFAG00000043562	CHD1L	99	59.879	Macaca_fascicularis
ENSAMXG00000012367	chd1l	85	59.930	ENSMMUG00000009024	CHD1L	97	59.450	Macaca_mulatta
ENSAMXG00000012367	chd1l	85	59.930	ENSMNEG00000039905	CHD1L	97	59.450	Macaca_nemestrina
ENSAMXG00000012367	chd1l	85	59.930	ENSMLEG00000030900	CHD1L	97	59.450	Mandrillus_leucophaeus
ENSAMXG00000012367	chd1l	100	60.138	ENSMAMG00000012822	chd1l	100	61.964	Mastacembelus_armatus
ENSAMXG00000012367	chd1l	95	62.866	ENSMZEG00005020830	chd1l	95	62.448	Maylandia_zebra
ENSAMXG00000012367	chd1l	85	58.030	ENSMGAG00000014304	CHD1L	99	58.030	Meleagris_gallopavo
ENSAMXG00000012367	chd1l	86	60.460	ENSMICG00000002497	CHD1L	98	59.865	Microcebus_murinus
ENSAMXG00000012367	chd1l	88	58.621	ENSMOCG00000006305	Chd1l	99	58.621	Microtus_ochrogaster
ENSAMXG00000012367	chd1l	87	60.183	ENSMMOG00000005964	chd1l	92	60.526	Mola_mola
ENSAMXG00000012367	chd1l	88	59.259	ENSMODG00000018717	CHD1L	99	59.438	Monodelphis_domestica
ENSAMXG00000012367	chd1l	99	61.002	ENSMALG00000014675	chd1l	99	60.788	Monopterus_albus
ENSAMXG00000012367	chd1l	88	59.730	MGP_CAROLIEiJ_G0025401	Chd1l	99	59.730	Mus_caroli
ENSAMXG00000012367	chd1l	87	59.209	ENSMUSG00000028089	Chd1l	99	59.106	Mus_musculus
ENSAMXG00000012367	chd1l	88	59.371	MGP_PahariEiJ_G0026845	Chd1l	99	59.371	Mus_pahari
ENSAMXG00000012367	chd1l	87	60.343	MGP_SPRETEiJ_G0026347	Chd1l	99	59.910	Mus_spretus
ENSAMXG00000012367	chd1l	88	57.901	ENSMPUG00000000615	CHD1L	98	57.901	Mustela_putorius_furo
ENSAMXG00000012367	chd1l	84	59.929	ENSMLUG00000007573	CHD1L	98	58.296	Myotis_lucifugus
ENSAMXG00000012367	chd1l	85	55.388	ENSNGAG00000000908	Chd1l	98	55.388	Nannospalax_galili
ENSAMXG00000012367	chd1l	87	62.557	ENSNBRG00000006021	chd1l	96	62.670	Neolamprologus_brichardi
ENSAMXG00000012367	chd1l	85	59.674	ENSNLEG00000000179	CHD1L	97	59.221	Nomascus_leucogenys
ENSAMXG00000012367	chd1l	84	50.824	ENSOPRG00000006973	CHD1L	99	51.116	Ochotona_princeps
ENSAMXG00000012367	chd1l	85	56.092	ENSODEG00000002494	CHD1L	98	56.109	Octodon_degus
ENSAMXG00000012367	chd1l	100	61.117	ENSONIG00000003183	chd1l	100	61.214	Oreochromis_niloticus
ENSAMXG00000012367	chd1l	76	57.433	ENSOANG00000003068	CHD1L	92	58.991	Ornithorhynchus_anatinus
ENSAMXG00000012367	chd1l	86	57.321	ENSOCUG00000009336	CHD1L	98	57.047	Oryctolagus_cuniculus
ENSAMXG00000012367	chd1l	88	61.130	ENSORLG00000003673	chd1l	97	61.356	Oryzias_latipes
ENSAMXG00000012367	chd1l	95	59.502	ENSORLG00020005123	chd1l	99	61.143	Oryzias_latipes_hni
ENSAMXG00000012367	chd1l	95	59.006	ENSORLG00015001680	chd1l	98	62.384	Oryzias_latipes_hsok
ENSAMXG00000012367	chd1l	87	58.442	ENSOMEG00000006109	chd1l	100	58.442	Oryzias_melastigma
ENSAMXG00000012367	chd1l	88	59.029	ENSOGAG00000008775	CHD1L	98	59.029	Otolemur_garnettii
ENSAMXG00000012367	chd1l	88	58.484	ENSOARG00000020547	CHD1L	99	59.368	Ovis_aries
ENSAMXG00000012367	chd1l	84	60.285	ENSPPAG00000039193	CHD1L	99	59.830	Pan_paniscus
ENSAMXG00000012367	chd1l	84	60.355	ENSPPRG00000010258	CHD1L	98	58.937	Panthera_pardus
ENSAMXG00000012367	chd1l	85	60.188	ENSPTRG00000001220	CHD1L	96	59.606	Pan_troglodytes
ENSAMXG00000012367	chd1l	84	60.259	ENSPANG00000009170	CHD1L	98	59.137	Papio_anubis
ENSAMXG00000012367	chd1l	99	61.188	ENSPKIG00000022166	chd1l	97	63.075	Paramormyrops_kingsleyae
ENSAMXG00000012367	chd1l	88	59.076	ENSPSIG00000012595	CHD1L	98	59.076	Pelodiscus_sinensis
ENSAMXG00000012367	chd1l	87	57.901	ENSPEMG00000013528	Chd1l	99	57.748	Peromyscus_maniculatus_bairdii
ENSAMXG00000012367	chd1l	82	60.219	ENSPCIG00000030409	CHD1L	99	60.558	Phascolarctos_cinereus
ENSAMXG00000012367	chd1l	99	61.040	ENSPFOG00000015948	chd1l	100	61.002	Poecilia_formosa
ENSAMXG00000012367	chd1l	99	60.954	ENSPLAG00000015145	chd1l	100	62.848	Poecilia_latipinna
ENSAMXG00000012367	chd1l	94	62.461	ENSPMEG00000008720	chd1l	99	62.579	Poecilia_mexicana
ENSAMXG00000012367	chd1l	86	64.162	ENSPREG00000017885	chd1l	98	64.277	Poecilia_reticulata
ENSAMXG00000012367	chd1l	85	60.140	ENSPPYG00000000946	CHD1L	97	59.679	Pongo_abelii
ENSAMXG00000012367	chd1l	81	54.568	ENSPCAG00000005959	CHD1L	90	54.668	Procavia_capensis
ENSAMXG00000012367	chd1l	84	55.582	ENSPVAG00000006084	CHD1L	99	55.582	Pteropus_vampyrus
ENSAMXG00000012367	chd1l	86	64.948	ENSPNYG00000013001	chd1l	97	64.719	Pundamilia_nyererei
ENSAMXG00000012367	chd1l	100	68.641	ENSPNAG00000011881	chd1l	100	70.010	Pygocentrus_nattereri
ENSAMXG00000012367	chd1l	89	57.675	ENSRNOG00000017669	Chd1l	99	58.732	Rattus_norvegicus
ENSAMXG00000012367	chd1l	85	59.672	ENSRBIG00000041272	CHD1L	97	58.857	Rhinopithecus_bieti
ENSAMXG00000012367	chd1l	85	59.859	ENSRROG00000041354	CHD1L	96	59.789	Rhinopithecus_roxellana
ENSAMXG00000012367	chd1l	86	59.447	ENSSHAG00000017395	CHD1L	99	58.446	Sarcophilus_harrisii
ENSAMXG00000012367	chd1l	94	63.080	ENSSFOG00015003649	chd1l	98	63.815	Scleropages_formosus
ENSAMXG00000012367	chd1l	100	58.784	ENSSMAG00000019377	chd1l	100	59.266	Scophthalmus_maximus
ENSAMXG00000012367	chd1l	85	65.248	ENSSDUG00000019831	chd1l	95	65.248	Seriola_dumerili
ENSAMXG00000012367	chd1l	85	65.457	ENSSLDG00000012714	chd1l	95	65.533	Seriola_lalandi_dorsalis
ENSAMXG00000012367	chd1l	88	57.723	ENSSPUG00000016865	CHD1L	99	57.835	Sphenodon_punctatus
ENSAMXG00000012367	chd1l	94	62.225	ENSSPAG00000017653	chd1l	100	62.461	Stegastes_partitus
ENSAMXG00000012367	chd1l	87	57.701	ENSSSCG00000006701	CHD1L	99	57.240	Sus_scrofa
ENSAMXG00000012367	chd1l	84	58.284	ENSTGUG00000013392	-	99	57.621	Taeniopygia_guttata
ENSAMXG00000012367	chd1l	84	60.731	ENSTNIG00000004902	chd1l	99	60.023	Tetraodon_nigroviridis
ENSAMXG00000012367	chd1l	87	55.543	ENSTTRG00000011711	CHD1L	99	56.655	Tursiops_truncatus
ENSAMXG00000012367	chd1l	86	59.379	ENSUAMG00000021991	CHD1L	97	59.494	Ursus_americanus
ENSAMXG00000012367	chd1l	86	59.148	ENSUMAG00000009733	CHD1L	97	59.148	Ursus_maritimus
ENSAMXG00000012367	chd1l	90	56.921	ENSVVUG00000007316	CHD1L	93	60.279	Vulpes_vulpes
ENSAMXG00000012367	chd1l	96	60.758	ENSXCOG00000008336	chd1l	96	60.513	Xiphophorus_couchianus
ENSAMXG00000012367	chd1l	99	61.259	ENSXMAG00000015898	chd1l	100	61.259	Xiphophorus_maculatus