EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012390 (Gene tree)
Gene ID: 103033684
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 15632 bases
Position: chr12:295551-311182
Accession: 103033684
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000044728	RNA_bind	PF08675.11	1.3e-33	1	1
ENSAMXP00000012784	RNA_bind	PF08675.11	1.5e-33	1	1
ENSAMXP00000044728	CAF1	PF04857.20	1.5e-89	1	1
ENSAMXP00000012784	CAF1	PF04857.20	2e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012784	-	2056	XM_022674413	ENSAMXP00000012784	643 (aa)	XP_022530134	W5KYX2
ENSAMXT00000038570	-	1788	-	ENSAMXP00000044728	595 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000012390's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012390's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012390	parn	100	66.966	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSAMXG00000012390	parn	92	71.354	ENSAMEG00000011208	PARN	90	73.090	Ailuropoda_melanoleuca
ENSAMXG00000012390	parn	96	69.735	ENSACIG00000000619	parn	99	69.922	Amphilophus_citrinellus
ENSAMXG00000012390	parn	96	77.387	ENSAOCG00000003465	parn	100	72.648	Amphiprion_ocellaris
ENSAMXG00000012390	parn	77	81.818	ENSAPEG00000010661	parn	92	84.407	Amphiprion_percula
ENSAMXG00000012390	parn	96	76.127	ENSATEG00000004661	parn	100	71.988	Anabas_testudineus
ENSAMXG00000012390	parn	92	72.600	ENSAPLG00000013914	PARN	90	73.647	Anas_platyrhynchos
ENSAMXG00000012390	parn	100	65.723	ENSACAG00000004973	PARN	100	66.170	Anolis_carolinensis
ENSAMXG00000012390	parn	92	72.870	ENSANAG00000031516	PARN	91	79.661	Aotus_nancymaae
ENSAMXG00000012390	parn	96	76.382	ENSACLG00000004742	parn	100	72.312	Astatotilapia_calliptera
ENSAMXG00000012390	parn	100	65.630	ENSBTAG00000018097	PARN	100	66.610	Bos_taurus
ENSAMXG00000012390	parn	92	72.870	ENSCJAG00000015866	PARN	91	79.661	Callithrix_jacchus
ENSAMXG00000012390	parn	100	66.769	ENSCAFG00000018795	PARN	100	66.769	Canis_familiaris
ENSAMXG00000012390	parn	100	66.769	ENSCAFG00020024126	PARN	100	66.769	Canis_lupus_dingo
ENSAMXG00000012390	parn	52	30.408	ENSCAFG00020017742	PNLDC1	91	30.723	Canis_lupus_dingo
ENSAMXG00000012390	parn	92	71.478	ENSCHIG00000018143	PARN	90	73.997	Capra_hircus
ENSAMXG00000012390	parn	76	50.529	ENSCAPG00000007984	PARN	78	50.529	Cavia_aperea
ENSAMXG00000012390	parn	93	70.812	ENSCPOG00000002263	PARN	91	70.812	Cavia_porcellus
ENSAMXG00000012390	parn	92	72.870	ENSCCAG00000030367	PARN	91	79.661	Cebus_capucinus
ENSAMXG00000012390	parn	57	37.500	ENSCATG00000033196	PNLDC1	72	37.500	Cercocebus_atys
ENSAMXG00000012390	parn	87	76.083	ENSCATG00000041368	PARN	95	78.531	Cercocebus_atys
ENSAMXG00000012390	parn	94	71.259	ENSCLAG00000015406	PARN	92	71.259	Chinchilla_lanigera
ENSAMXG00000012390	parn	92	72.696	ENSCSAG00000008142	PARN	90	74.609	Chlorocebus_sabaeus
ENSAMXG00000012390	parn	91	55.477	ENSCHOG00000007014	PARN	89	57.774	Choloepus_hoffmanni
ENSAMXG00000012390	parn	83	72.201	ENSCPBG00000006609	PARN	89	73.745	Chrysemys_picta_bellii
ENSAMXG00000012390	parn	84	41.088	ENSCING00000010142	-	99	42.589	Ciona_intestinalis
ENSAMXG00000012390	parn	92	61.460	ENSCANG00000028849	-	86	79.661	Colobus_angolensis_palliatus
ENSAMXG00000012390	parn	93	69.828	ENSCGRG00001012096	Parn	91	72.426	Cricetulus_griseus_chok1gshd
ENSAMXG00000012390	parn	93	69.828	ENSCGRG00000004939	Parn	91	72.426	Cricetulus_griseus_crigri
ENSAMXG00000012390	parn	96	75.000	ENSCSEG00000002064	parn	100	71.364	Cynoglossus_semilaevis
ENSAMXG00000012390	parn	97	73.754	ENSCVAG00000014848	parn	100	70.408	Cyprinodon_variegatus
ENSAMXG00000012390	parn	100	73.636	ENSDARG00000102634	parn	100	73.485	Danio_rerio
ENSAMXG00000012390	parn	92	72.000	ENSDNOG00000000833	PARN	94	78.343	Dasypus_novemcinctus
ENSAMXG00000012390	parn	65	74.905	ENSETEG00000014828	-	67	75.494	Echinops_telfairi
ENSAMXG00000012390	parn	92	72.000	ENSEASG00005011400	PARN	90	72.000	Equus_asinus_asinus
ENSAMXG00000012390	parn	92	71.826	ENSECAG00000017792	PARN	90	71.826	Equus_caballus
ENSAMXG00000012390	parn	77	81.481	ENSEEUG00000010370	PARN	77	81.481	Erinaceus_europaeus
ENSAMXG00000012390	parn	98	76.382	ENSELUG00000013139	parn	90	72.701	Esox_lucius
ENSAMXG00000012390	parn	94	71.062	ENSFCAG00000044961	PARN	88	77.966	Felis_catus
ENSAMXG00000012390	parn	99	65.961	ENSFALG00000003911	PARN	98	67.236	Ficedula_albicollis
ENSAMXG00000012390	parn	87	74.765	ENSFDAG00000009234	PARN	90	72.906	Fukomys_damarensis
ENSAMXG00000012390	parn	98	66.667	ENSFHEG00000013738	parn	92	84.746	Fundulus_heteroclitus
ENSAMXG00000012390	parn	87	78.879	ENSGMOG00000003231	parn	99	80.000	Gadus_morhua
ENSAMXG00000012390	parn	97	69.901	ENSGALG00000003091	PARN	98	70.161	Gallus_gallus
ENSAMXG00000012390	parn	100	70.247	ENSGAFG00000011061	parn	100	70.102	Gambusia_affinis
ENSAMXG00000012390	parn	100	69.820	ENSGACG00000019501	parn	100	72.068	Gasterosteus_aculeatus
ENSAMXG00000012390	parn	92	72.522	ENSGGOG00000025224	PARN	91	79.661	Gorilla_gorilla
ENSAMXG00000012390	parn	96	76.382	ENSHBUG00000017906	parn	91	81.101	Haplochromis_burtoni
ENSAMXG00000012390	parn	93	70.466	ENSHGLG00000010886	PARN	91	70.466	Heterocephalus_glaber_female
ENSAMXG00000012390	parn	93	70.466	ENSHGLG00100014659	PARN	91	70.466	Heterocephalus_glaber_male
ENSAMXG00000012390	parn	86	75.188	ENSHCOG00000008683	parn	92	78.612	Hippocampus_comes
ENSAMXG00000012390	parn	97	74.221	ENSIPUG00000012401	parn	100	69.683	Ictalurus_punctatus
ENSAMXG00000012390	parn	92	71.503	ENSSTOG00000007519	PARN	87	75.410	Ictidomys_tridecemlineatus
ENSAMXG00000012390	parn	94	70.435	ENSJJAG00000023049	Parn	92	72.522	Jaculus_jaculus
ENSAMXG00000012390	parn	97	75.336	ENSKMAG00000009462	parn	100	72.076	Kryptolebias_marmoratus
ENSAMXG00000012390	parn	97	75.374	ENSLBEG00000009167	parn	96	77.581	Labrus_bergylta
ENSAMXG00000012390	parn	82	72.962	ENSLACG00000004207	PARN	100	73.522	Latimeria_chalumnae
ENSAMXG00000012390	parn	93	77.153	ENSLOCG00000000715	parn	100	69.400	Lepisosteus_oculatus
ENSAMXG00000012390	parn	94	71.527	ENSLAFG00000015036	PARN	91	73.875	Loxodonta_africana
ENSAMXG00000012390	parn	96	65.736	ENSMFAG00000044852	PARN	86	79.661	Macaca_fascicularis
ENSAMXG00000012390	parn	92	72.696	ENSMMUG00000018849	PARN	86	79.661	Macaca_mulatta
ENSAMXG00000012390	parn	92	72.696	ENSMNEG00000045108	PARN	86	79.661	Macaca_nemestrina
ENSAMXG00000012390	parn	92	72.522	ENSMLEG00000031743	PARN	86	79.661	Mandrillus_leucophaeus
ENSAMXG00000012390	parn	96	76.461	ENSMAMG00000006939	parn	100	72.504	Mastacembelus_armatus
ENSAMXG00000012390	parn	96	76.382	ENSMZEG00005013590	parn	100	72.312	Maylandia_zebra
ENSAMXG00000012390	parn	93	70.069	ENSMGAG00000001004	PARN	91	71.280	Meleagris_gallopavo
ENSAMXG00000012390	parn	52	34.247	ENSMAUG00000012298	Pnldc1	68	34.247	Mesocricetus_auratus
ENSAMXG00000012390	parn	87	68.704	ENSMAUG00000008025	Parn	89	67.888	Mesocricetus_auratus
ENSAMXG00000012390	parn	92	72.174	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSAMXG00000012390	parn	81	75.304	ENSMOCG00000022211	Parn	100	78.138	Microtus_ochrogaster
ENSAMXG00000012390	parn	87	82.917	ENSMMOG00000011333	parn	87	82.917	Mola_mola
ENSAMXG00000012390	parn	81	77.419	ENSMODG00000004915	PARN	99	80.040	Monodelphis_domestica
ENSAMXG00000012390	parn	87	81.273	ENSMALG00000019426	parn	92	83.210	Monopterus_albus
ENSAMXG00000012390	parn	87	74.011	MGP_CAROLIEiJ_G0020466	Parn	89	72.340	Mus_caroli
ENSAMXG00000012390	parn	51	30.120	ENSMUSG00000073460	Pnldc1	97	30.120	Mus_musculus
ENSAMXG00000012390	parn	87	74.200	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSAMXG00000012390	parn	87	73.823	MGP_PahariEiJ_G0016172	Parn	84	75.518	Mus_pahari
ENSAMXG00000012390	parn	87	74.011	MGP_SPRETEiJ_G0021361	Parn	89	72.340	Mus_spretus
ENSAMXG00000012390	parn	87	75.895	ENSMPUG00000014464	PARN	100	67.077	Mustela_putorius_furo
ENSAMXG00000012390	parn	80	76.113	ENSMLUG00000005414	PARN	100	78.543	Myotis_lucifugus
ENSAMXG00000012390	parn	87	80.492	ENSNBRG00000006805	parn	92	80.443	Neolamprologus_brichardi
ENSAMXG00000012390	parn	92	72.696	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSAMXG00000012390	parn	73	65.595	ENSMEUG00000008178	-	83	56.107	Notamacropus_eugenii
ENSAMXG00000012390	parn	99	63.166	ENSOPRG00000012187	PARN	100	63.281	Ochotona_princeps
ENSAMXG00000012390	parn	94	64.786	ENSODEG00000001617	PARN	92	68.293	Octodon_degus
ENSAMXG00000012390	parn	96	76.717	ENSONIG00000000151	parn	100	72.540	Oreochromis_niloticus
ENSAMXG00000012390	parn	52	75.157	ENSOANG00000020155	-	96	61.975	Ornithorhynchus_anatinus
ENSAMXG00000012390	parn	86	75.429	ENSOCUG00000000322	PARN	83	77.905	Oryctolagus_cuniculus
ENSAMXG00000012390	parn	97	74.959	ENSORLG00020010313	parn	100	72.280	Oryzias_latipes_hni
ENSAMXG00000012390	parn	97	74.627	ENSORLG00015000300	parn	100	72.131	Oryzias_latipes_hsok
ENSAMXG00000012390	parn	97	75.503	ENSOMEG00000019555	parn	100	71.958	Oryzias_melastigma
ENSAMXG00000012390	parn	80	74.545	ENSOGAG00000014626	PARN	100	77.172	Otolemur_garnettii
ENSAMXG00000012390	parn	80	76.923	ENSOARG00000007574	PARN	100	79.555	Ovis_aries
ENSAMXG00000012390	parn	100	66.816	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSAMXG00000012390	parn	94	71.062	ENSPPRG00000018583	PARN	88	77.966	Panthera_pardus
ENSAMXG00000012390	parn	94	71.062	ENSPTIG00000012135	PARN	88	77.966	Panthera_tigris_altaica
ENSAMXG00000012390	parn	100	66.816	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSAMXG00000012390	parn	92	70.261	ENSPANG00000020099	PARN	86	79.661	Papio_anubis
ENSAMXG00000012390	parn	97	73.986	ENSPKIG00000022807	parn	96	68.966	Paramormyrops_kingsleyae
ENSAMXG00000012390	parn	93	73.057	ENSPSIG00000014804	PARN	100	66.010	Pelodiscus_sinensis
ENSAMXG00000012390	parn	97	71.973	ENSPMGG00000014431	parn	83	75.885	Periophthalmus_magnuspinnatus
ENSAMXG00000012390	parn	94	67.814	ENSPEMG00000018439	Parn	92	69.707	Peromyscus_maniculatus_bairdii
ENSAMXG00000012390	parn	87	64.794	ENSPMAG00000003956	parn	98	68.023	Petromyzon_marinus
ENSAMXG00000012390	parn	68	68.558	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSAMXG00000012390	parn	97	73.826	ENSPFOG00000012823	parn	100	69.913	Poecilia_formosa
ENSAMXG00000012390	parn	97	73.993	ENSPLAG00000006395	parn	100	70.203	Poecilia_latipinna
ENSAMXG00000012390	parn	96	73.957	ENSPMEG00000007711	parn	100	70.058	Poecilia_mexicana
ENSAMXG00000012390	parn	96	74.124	ENSPREG00000000147	parn	100	70.203	Poecilia_reticulata
ENSAMXG00000012390	parn	100	66.617	ENSPPYG00000007123	PARN	100	66.716	Pongo_abelii
ENSAMXG00000012390	parn	87	61.993	ENSPCAG00000001741	PARN	100	57.614	Procavia_capensis
ENSAMXG00000012390	parn	92	69.565	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSAMXG00000012390	parn	91	68.476	ENSPVAG00000002547	PARN	90	70.141	Pteropus_vampyrus
ENSAMXG00000012390	parn	96	76.768	ENSPNYG00000006835	parn	100	72.419	Pundamilia_nyererei
ENSAMXG00000012390	parn	93	89.604	ENSPNAG00000018905	parn	100	89.604	Pygocentrus_nattereri
ENSAMXG00000012390	parn	87	74.200	ENSRNOG00000002912	Parn	96	79.381	Rattus_norvegicus
ENSAMXG00000012390	parn	51	30.422	ENSRNOG00000023140	Pnldc1	89	30.422	Rattus_norvegicus
ENSAMXG00000012390	parn	92	72.954	ENSSBOG00000034726	PARN	86	79.661	Saimiri_boliviensis_boliviensis
ENSAMXG00000012390	parn	65	77.938	ENSSHAG00000008493	PARN	93	77.938	Sarcophilus_harrisii
ENSAMXG00000012390	parn	96	75.722	ENSSFOG00015014165	parn	98	75.722	Scleropages_formosus
ENSAMXG00000012390	parn	97	75.503	ENSSMAG00000000685	parn	100	69.844	Scophthalmus_maximus
ENSAMXG00000012390	parn	100	72.688	ENSSDUG00000014555	parn	100	72.832	Seriola_dumerili
ENSAMXG00000012390	parn	67	79.493	ENSSARG00000014339	PARN	75	79.493	Sorex_araneus
ENSAMXG00000012390	parn	94	73.196	ENSSPUG00000007719	PARN	91	74.227	Sphenodon_punctatus
ENSAMXG00000012390	parn	100	73.654	ENSSPAG00000007095	parn	100	73.799	Stegastes_partitus
ENSAMXG00000012390	parn	92	74.286	ENSSSCG00000007878	PARN	89	67.683	Sus_scrofa
ENSAMXG00000012390	parn	99	65.559	ENSTGUG00000004971	PARN	99	67.287	Taeniopygia_guttata
ENSAMXG00000012390	parn	100	72.012	ENSTNIG00000008252	parn	100	72.163	Tetraodon_nigroviridis
ENSAMXG00000012390	parn	83	60.659	ENSTBEG00000010407	PARN	89	62.597	Tupaia_belangeri
ENSAMXG00000012390	parn	91	67.430	ENSTTRG00000002843	PARN	90	69.611	Tursiops_truncatus
ENSAMXG00000012390	parn	76	63.948	ENSUAMG00000008283	PARN	95	66.524	Ursus_americanus
ENSAMXG00000012390	parn	92	71.826	ENSUMAG00000004527	PARN	90	73.391	Ursus_maritimus
ENSAMXG00000012390	parn	93	67.869	ENSVPAG00000008968	PARN	92	71.555	Vicugna_pacos
ENSAMXG00000012390	parn	100	67.077	ENSVVUG00000019509	PARN	100	67.077	Vulpes_vulpes
ENSAMXG00000012390	parn	93	69.655	ENSXETG00000010994	parn	100	76.571	Xenopus_tropicalis
ENSAMXG00000012390	parn	96	70.167	ENSXCOG00000015990	parn	99	73.064	Xiphophorus_couchianus
ENSAMXG00000012390	parn	100	69.869	ENSXMAG00000014783	parn	100	70.160	Xiphophorus_maculatus