EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012485 (Gene tree)
Gene ID: 103025061
Gene Symbol: spen
Alias: im:7148349|si:ch211-125c5.1
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 40429 bases
Position: chr15:15196041-15236469
Accession: 103025061
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012831	RRM_5	PF13893.6	4.7e-08	1	2
ENSAMXP00000012831	RRM_5	PF13893.6	4.7e-08	2	2
ENSAMXP00000042817	RRM_5	PF13893.6	5.6e-08	1	2
ENSAMXP00000042817	RRM_5	PF13893.6	5.6e-08	2	2
ENSAMXP00000012831	RRM_1	PF00076.22	5e-42	1	3
ENSAMXP00000012831	RRM_1	PF00076.22	5e-42	2	3
ENSAMXP00000012831	RRM_1	PF00076.22	5e-42	3	3
ENSAMXP00000042817	RRM_1	PF00076.22	4e-41	1	3
ENSAMXP00000042817	RRM_1	PF00076.22	4e-41	2	3
ENSAMXP00000042817	RRM_1	PF00076.22	4e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052742	-	12755	-	ENSAMXP00000042817	3563 (aa)	-	-
ENSAMXT00000012831	-	12614	XM_007246244	ENSAMXP00000012831	3516 (aa)	XP_007246306	W5KZ19

Gene Model

Click here to download ENSAMXG00000012485's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012485's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012485	spen	89	82.065	ENSG00000065526	SPEN	85	92.460	Homo_sapiens
ENSAMXG00000012485	spen	100	55.967	ENSAPOG00000009853	-	86	86.592	Acanthochromis_polyacanthus
ENSAMXG00000012485	spen	94	78.261	ENSAPOG00000011411	si:ch1073-335m2.2	99	78.261	Acanthochromis_polyacanthus
ENSAMXG00000012485	spen	69	58.768	ENSAMEG00000011817	SPEN	96	82.123	Ailuropoda_melanoleuca
ENSAMXG00000012485	spen	86	74.809	ENSAOCG00000008077	si:ch1073-335m2.2	99	67.296	Amphiprion_ocellaris
ENSAMXG00000012485	spen	100	55.833	ENSAOCG00000014505	-	100	55.882	Amphiprion_ocellaris
ENSAMXG00000012485	spen	100	55.763	ENSAPEG00000010288	-	100	55.812	Amphiprion_percula
ENSAMXG00000012485	spen	95	76.316	ENSAPEG00000013515	si:ch1073-335m2.2	99	77.714	Amphiprion_percula
ENSAMXG00000012485	spen	100	55.962	ENSATEG00000005627	-	100	55.611	Anabas_testudineus
ENSAMXG00000012485	spen	99	61.154	ENSATEG00000007674	si:ch1073-335m2.2	99	77.143	Anabas_testudineus
ENSAMXG00000012485	spen	99	48.700	ENSAPLG00000012618	SPEN	99	80.263	Anas_platyrhynchos
ENSAMXG00000012485	spen	98	70.833	ENSACAG00000013761	SPEN	94	73.620	Anolis_carolinensis
ENSAMXG00000012485	spen	98	73.034	ENSANAG00000034428	SPEN	86	73.988	Aotus_nancymaae
ENSAMXG00000012485	spen	96	82.249	ENSACLG00000021433	si:ch1073-335m2.2	99	82.249	Astatotilapia_calliptera
ENSAMXG00000012485	spen	100	55.568	ENSACLG00000016922	-	100	55.283	Astatotilapia_calliptera
ENSAMXG00000012485	spen	99	48.379	ENSBTAG00000018729	SPEN	97	82.123	Bos_taurus
ENSAMXG00000012485	spen	89	82.065	ENSCJAG00000008527	SPEN	86	83.240	Callithrix_jacchus
ENSAMXG00000012485	spen	86	54.568	ENSCAFG00000016132	-	91	83.240	Canis_familiaris
ENSAMXG00000012485	spen	100	47.419	ENSCHIG00000025070	SPEN	99	83.240	Capra_hircus
ENSAMXG00000012485	spen	80	48.529	ENSTSYG00000036016	SPEN	85	49.382	Carlito_syrichta
ENSAMXG00000012485	spen	97	47.162	ENSCAPG00000013803	SPEN	90	80.132	Cavia_aperea
ENSAMXG00000012485	spen	97	47.130	ENSCPOG00000014036	SPEN	90	80.132	Cavia_porcellus
ENSAMXG00000012485	spen	98	82.065	ENSCCAG00000020258	SPEN	86	83.240	Cebus_capucinus
ENSAMXG00000012485	spen	84	88.148	ENSCATG00000015079	SPEN	86	83.240	Cercocebus_atys
ENSAMXG00000012485	spen	97	47.111	ENSCLAG00000002018	SPEN	89	80.132	Chinchilla_lanigera
ENSAMXG00000012485	spen	89	82.065	ENSCSAG00000000841	SPEN	86	83.240	Chlorocebus_sabaeus
ENSAMXG00000012485	spen	100	48.523	ENSCPBG00000010477	SPEN	65	83.240	Chrysemys_picta_bellii
ENSAMXG00000012485	spen	89	73.034	ENSCANG00000034547	SPEN	86	73.988	Colobus_angolensis_palliatus
ENSAMXG00000012485	spen	89	49.855	ENSCGRG00001007725	Spen	97	82.682	Cricetulus_griseus_chok1gshd
ENSAMXG00000012485	spen	88	48.661	ENSCGRG00000010581	Spen	97	79.470	Cricetulus_griseus_crigri
ENSAMXG00000012485	spen	99	59.011	ENSCSEG00000003915	-	100	59.006	Cynoglossus_semilaevis
ENSAMXG00000012485	spen	100	53.655	ENSCVAG00000016346	-	100	53.271	Cyprinodon_variegatus
ENSAMXG00000012485	spen	97	64.114	ENSCVAG00000009075	si:ch1073-335m2.2	99	76.000	Cyprinodon_variegatus
ENSAMXG00000012485	spen	100	62.970	ENSDARG00000074245	spen	100	94.815	Danio_rerio
ENSAMXG00000012485	spen	96	76.882	ENSDARG00000074332	si:ch1073-335m2.2	99	76.882	Danio_rerio
ENSAMXG00000012485	spen	98	81.522	ENSDNOG00000041948	SPEN	86	82.682	Dasypus_novemcinctus
ENSAMXG00000012485	spen	99	43.619	ENSDORG00000023909	Spen	99	79.452	Dipodomys_ordii
ENSAMXG00000012485	spen	56	61.986	ENSETEG00000016692	-	56	80.132	Echinops_telfairi
ENSAMXG00000012485	spen	94	88.148	ENSEASG00005015911	SPEN	86	83.240	Equus_asinus_asinus
ENSAMXG00000012485	spen	94	88.148	ENSECAG00000008833	SPEN	86	83.240	Equus_caballus
ENSAMXG00000012485	spen	56	86.047	ENSEEUG00000010255	SPEN	59	86.047	Erinaceus_europaeus
ENSAMXG00000012485	spen	97	80.556	ENSELUG00000007726	si:ch1073-335m2.2	99	80.556	Esox_lucius
ENSAMXG00000012485	spen	87	46.835	ENSFALG00000003551	SPEN	100	46.553	Ficedula_albicollis
ENSAMXG00000012485	spen	92	49.414	ENSFDAG00000010212	SPEN	88	79.452	Fukomys_damarensis
ENSAMXG00000012485	spen	95	77.540	ENSFHEG00000004544	si:ch1073-335m2.2	99	77.540	Fundulus_heteroclitus
ENSAMXG00000012485	spen	95	83.333	ENSGMOG00000008397	-	98	85.475	Gadus_morhua
ENSAMXG00000012485	spen	99	66.228	ENSGMOG00000008156	si:ch1073-335m2.2	99	75.429	Gadus_morhua
ENSAMXG00000012485	spen	100	49.009	ENSGALG00000036932	SPEN	99	83.240	Gallus_gallus
ENSAMXG00000012485	spen	95	77.540	ENSGAFG00000021570	si:ch1073-335m2.2	99	77.540	Gambusia_affinis
ENSAMXG00000012485	spen	100	54.100	ENSGAFG00000015819	-	87	83.799	Gambusia_affinis
ENSAMXG00000012485	spen	94	52.882	ENSGACG00000001176	si:ch1073-335m2.2	99	77.714	Gasterosteus_aculeatus
ENSAMXG00000012485	spen	100	54.405	ENSGACG00000005341	-	99	86.034	Gasterosteus_aculeatus
ENSAMXG00000012485	spen	99	72.968	ENSGAGG00000020785	SPEN	95	83.240	Gopherus_agassizii
ENSAMXG00000012485	spen	89	82.065	ENSGGOG00000012041	SPEN	86	83.240	Gorilla_gorilla
ENSAMXG00000012485	spen	100	55.611	ENSHBUG00000020626	-	100	55.326	Haplochromis_burtoni
ENSAMXG00000012485	spen	96	82.249	ENSHBUG00000023253	si:ch1073-335m2.2	99	82.249	Haplochromis_burtoni
ENSAMXG00000012485	spen	73	54.516	ENSHGLG00000019259	SPEN	77	83.240	Heterocephalus_glaber_female
ENSAMXG00000012485	spen	67	57.760	ENSHGLG00100019294	SPEN	75	79.452	Heterocephalus_glaber_male
ENSAMXG00000012485	spen	94	72.028	ENSHCOG00000006004	si:ch1073-335m2.2	99	72.028	Hippocampus_comes
ENSAMXG00000012485	spen	100	69.907	ENSIPUG00000021668	spen	100	70.414	Ictalurus_punctatus
ENSAMXG00000012485	spen	94	74.457	ENSIPUG00000018212	si:ch1073-335m2.2	98	74.457	Ictalurus_punctatus
ENSAMXG00000012485	spen	89	49.649	ENSSTOG00000021428	SPEN	87	79.452	Ictidomys_tridecemlineatus
ENSAMXG00000012485	spen	98	80.978	ENSJJAG00000010882	Spen	98	82.123	Jaculus_jaculus
ENSAMXG00000012485	spen	100	53.988	ENSKMAG00000003882	-	100	54.180	Kryptolebias_marmoratus
ENSAMXG00000012485	spen	93	77.005	ENSKMAG00000021725	si:ch1073-335m2.2	99	77.143	Kryptolebias_marmoratus
ENSAMXG00000012485	spen	84	49.269	ENSLBEG00000019129	-	100	49.204	Labrus_bergylta
ENSAMXG00000012485	spen	97	80.473	ENSLBEG00000020855	si:ch1073-335m2.2	99	81.928	Labrus_bergylta
ENSAMXG00000012485	spen	99	80.435	ENSLACG00000003258	SPEN	94	81.564	Latimeria_chalumnae
ENSAMXG00000012485	spen	97	85.517	ENSLOCG00000007896	si:ch1073-335m2.2	98	85.517	Lepisosteus_oculatus
ENSAMXG00000012485	spen	99	48.111	ENSLAFG00000004524	SPEN	86	79.870	Loxodonta_africana
ENSAMXG00000012485	spen	89	82.065	ENSMFAG00000041974	SPEN	86	83.240	Macaca_fascicularis
ENSAMXG00000012485	spen	89	82.065	ENSMMUG00000008026	SPEN	86	83.240	Macaca_mulatta
ENSAMXG00000012485	spen	89	82.065	ENSMNEG00000042402	SPEN	86	83.240	Macaca_nemestrina
ENSAMXG00000012485	spen	89	71.196	ENSMLEG00000039293	SPEN	86	72.067	Mandrillus_leucophaeus
ENSAMXG00000012485	spen	97	81.287	ENSMAMG00000023870	si:ch1073-335m2.2	99	81.287	Mastacembelus_armatus
ENSAMXG00000012485	spen	89	52.972	ENSMZEG00005021491	-	99	52.664	Maylandia_zebra
ENSAMXG00000012485	spen	96	82.249	ENSMZEG00005011762	si:ch1073-335m2.2	99	82.249	Maylandia_zebra
ENSAMXG00000012485	spen	80	52.675	ENSMAUG00000008318	Spen	81	82.682	Mesocricetus_auratus
ENSAMXG00000012485	spen	99	47.631	ENSMICG00000030994	SPEN	86	82.682	Microcebus_murinus
ENSAMXG00000012485	spen	90	49.130	ENSMOCG00000016083	Spen	97	82.682	Microtus_ochrogaster
ENSAMXG00000012485	spen	96	74.866	ENSMMOG00000021742	si:ch1073-335m2.2	99	77.714	Mola_mola
ENSAMXG00000012485	spen	100	47.547	ENSMODG00000003411	SPEN	99	83.240	Monodelphis_domestica
ENSAMXG00000012485	spen	100	56.240	ENSMALG00000008625	-	100	56.066	Monopterus_albus
ENSAMXG00000012485	spen	89	49.607	MGP_CAROLIEiJ_G0026745	Spen	87	82.123	Mus_caroli
ENSAMXG00000012485	spen	89	47.706	ENSMUSG00000040761	Spen	89	82.682	Mus_musculus
ENSAMXG00000012485	spen	99	46.273	MGP_PahariEiJ_G0029076	Spen	89	82.123	Mus_pahari
ENSAMXG00000012485	spen	89	49.302	MGP_SPRETEiJ_G0027724	Spen	97	82.123	Mus_spretus
ENSAMXG00000012485	spen	96	73.276	ENSMPUG00000016317	SPEN	96	74.775	Mustela_putorius_furo
ENSAMXG00000012485	spen	93	86.022	ENSMLUG00000010144	SPEN	92	86.022	Myotis_lucifugus
ENSAMXG00000012485	spen	94	50.364	ENSNGAG00000000641	Spen	96	83.240	Nannospalax_galili
ENSAMXG00000012485	spen	85	50.856	ENSNBRG00000022090	-	100	50.662	Neolamprologus_brichardi
ENSAMXG00000012485	spen	96	82.249	ENSNBRG00000005733	si:ch1073-335m2.2	99	82.249	Neolamprologus_brichardi
ENSAMXG00000012485	spen	88	78.616	ENSNLEG00000007652	SPEN	86	79.870	Nomascus_leucogenys
ENSAMXG00000012485	spen	89	83.333	ENSMEUG00000002422	SPEN	89	83.333	Notamacropus_eugenii
ENSAMXG00000012485	spen	86	62.072	ENSOPRG00000015800	SPEN	83	79.470	Ochotona_princeps
ENSAMXG00000012485	spen	100	44.839	ENSODEG00000016644	SPEN	91	83.240	Octodon_degus
ENSAMXG00000012485	spen	100	55.023	ENSONIG00000006573	-	98	88.705	Oreochromis_niloticus
ENSAMXG00000012485	spen	90	46.938	ENSOCUG00000010840	SPEN	86	62.573	Oryctolagus_cuniculus
ENSAMXG00000012485	spen	93	77.540	ENSORLG00000018414	si:ch1073-335m2.2	99	77.714	Oryzias_latipes
ENSAMXG00000012485	spen	87	46.948	ENSORLG00000028894	-	100	46.581	Oryzias_latipes
ENSAMXG00000012485	spen	93	77.540	ENSORLG00020009351	si:ch1073-335m2.2	99	77.714	Oryzias_latipes_hni
ENSAMXG00000012485	spen	87	47.290	ENSORLG00020007735	-	100	47.000	Oryzias_latipes_hni
ENSAMXG00000012485	spen	90	77.005	ENSORLG00015005537	si:ch1073-335m2.2	99	81.366	Oryzias_latipes_hsok
ENSAMXG00000012485	spen	100	50.830	ENSORLG00015022085	-	100	50.525	Oryzias_latipes_hsok
ENSAMXG00000012485	spen	97	75.130	ENSOMEG00000004509	si:ch1073-335m2.2	99	81.595	Oryzias_melastigma
ENSAMXG00000012485	spen	100	50.523	ENSOMEG00000007639	-	100	49.822	Oryzias_melastigma
ENSAMXG00000012485	spen	99	47.644	ENSOGAG00000025110	SPEN	86	83.240	Otolemur_garnettii
ENSAMXG00000012485	spen	99	47.172	ENSOARG00000008477	SPEN	86	75.000	Ovis_aries
ENSAMXG00000012485	spen	88	78.846	ENSPPAG00000035690	SPEN	86	80.132	Pan_paniscus
ENSAMXG00000012485	spen	89	82.065	ENSPTRG00000000210	SPEN	86	83.240	Pan_troglodytes
ENSAMXG00000012485	spen	89	82.065	ENSPANG00000006293	SPEN	86	83.240	Papio_anubis
ENSAMXG00000012485	spen	97	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	100	100.000	Paramormyrops_kingsleyae
ENSAMXG00000012485	spen	100	55.069	ENSPKIG00000002617	SPEN	89	88.268	Paramormyrops_kingsleyae
ENSAMXG00000012485	spen	99	47.494	ENSPSIG00000008026	SPEN	99	80.263	Pelodiscus_sinensis
ENSAMXG00000012485	spen	93	47.215	ENSPEMG00000022997	Spen	88	78.082	Peromyscus_maniculatus_bairdii
ENSAMXG00000012485	spen	98	78.610	ENSPFOG00000017986	si:ch1073-335m2.2	99	78.610	Poecilia_formosa
ENSAMXG00000012485	spen	95	78.610	ENSPLAG00000016625	si:ch1073-335m2.2	99	78.610	Poecilia_latipinna
ENSAMXG00000012485	spen	98	78.610	ENSPMEG00000002674	si:ch1073-335m2.2	99	78.610	Poecilia_mexicana
ENSAMXG00000012485	spen	100	54.075	ENSPMEG00000006764	-	87	83.240	Poecilia_mexicana
ENSAMXG00000012485	spen	100	53.838	ENSPREG00000010399	-	87	83.240	Poecilia_reticulata
ENSAMXG00000012485	spen	98	78.610	ENSPREG00000005357	si:ch1073-335m2.2	99	78.610	Poecilia_reticulata
ENSAMXG00000012485	spen	89	82.065	ENSPPYG00000001834	SPEN	86	83.240	Pongo_abelii
ENSAMXG00000012485	spen	88	68.000	ENSPCAG00000009543	SPEN	76	72.000	Procavia_capensis
ENSAMXG00000012485	spen	99	47.012	ENSPCOG00000021735	SPEN	96	82.682	Propithecus_coquereli
ENSAMXG00000012485	spen	77	61.890	ENSPVAG00000013794	SPEN	73	82.123	Pteropus_vampyrus
ENSAMXG00000012485	spen	96	82.249	ENSPNYG00000009042	si:ch1073-335m2.2	99	82.249	Pundamilia_nyererei
ENSAMXG00000012485	spen	100	55.467	ENSPNYG00000012379	-	100	55.210	Pundamilia_nyererei
ENSAMXG00000012485	spen	100	83.399	ENSPNAG00000020795	spen	100	83.399	Pygocentrus_nattereri
ENSAMXG00000012485	spen	98	79.213	ENSPNAG00000011452	si:ch1073-335m2.2	99	79.213	Pygocentrus_nattereri
ENSAMXG00000012485	spen	88	48.683	ENSRNOG00000033556	Spen	86	79.605	Rattus_norvegicus
ENSAMXG00000012485	spen	88	78.846	ENSRBIG00000039654	SPEN	86	80.132	Rhinopithecus_bieti
ENSAMXG00000012485	spen	88	78.616	ENSRROG00000035686	SPEN	86	79.870	Rhinopithecus_roxellana
ENSAMXG00000012485	spen	88	78.616	ENSSBOG00000028770	SPEN	86	79.870	Saimiri_boliviensis_boliviensis
ENSAMXG00000012485	spen	99	46.984	ENSSHAG00000004960	SPEN	97	81.543	Sarcophilus_harrisii
ENSAMXG00000012485	spen	100	57.453	ENSSFOG00015010267	si:ch1073-335m2.2	99	90.503	Scleropages_formosus
ENSAMXG00000012485	spen	86	66.667	ENSSFOG00015007131	si:ch1073-335m2.2	100	56.279	Scleropages_formosus
ENSAMXG00000012485	spen	100	55.577	ENSSMAG00000008996	-	100	55.303	Scophthalmus_maximus
ENSAMXG00000012485	spen	99	61.832	ENSSMAG00000000125	si:ch1073-335m2.2	99	77.714	Scophthalmus_maximus
ENSAMXG00000012485	spen	100	56.398	ENSSDUG00000003476	-	86	86.592	Seriola_dumerili
ENSAMXG00000012485	spen	97	65.969	ENSSDUG00000008416	si:ch1073-335m2.2	99	77.540	Seriola_dumerili
ENSAMXG00000012485	spen	100	56.411	ENSSLDG00000012950	-	86	86.592	Seriola_lalandi_dorsalis
ENSAMXG00000012485	spen	95	66.079	ENSSLDG00000023347	si:ch1073-335m2.2	99	77.540	Seriola_lalandi_dorsalis
ENSAMXG00000012485	spen	87	91.667	ENSSPUG00000001866	-	61	46.376	Sphenodon_punctatus
ENSAMXG00000012485	spen	100	56.003	ENSSPAG00000006014	-	87	86.592	Stegastes_partitus
ENSAMXG00000012485	spen	95	78.804	ENSSPAG00000012454	si:ch1073-335m2.2	99	78.804	Stegastes_partitus
ENSAMXG00000012485	spen	86	48.041	ENSSSCG00000034484	SPEN	84	83.240	Sus_scrofa
ENSAMXG00000012485	spen	100	53.804	ENSTRUG00000024350	-	100	53.719	Takifugu_rubripes
ENSAMXG00000012485	spen	85	77.174	ENSTRUG00000021008	si:ch1073-335m2.2	99	77.174	Takifugu_rubripes
ENSAMXG00000012485	spen	100	43.321	ENSTNIG00000014666	si:ch1073-335m2.2	95	77.143	Tetraodon_nigroviridis
ENSAMXG00000012485	spen	97	77.207	ENSTNIG00000010907	-	99	87.151	Tetraodon_nigroviridis
ENSAMXG00000012485	spen	69	81.218	ENSTBEG00000003628	SPEN	70	81.218	Tupaia_belangeri
ENSAMXG00000012485	spen	75	81.218	ENSTTRG00000015704	SPEN	70	81.218	Tursiops_truncatus
ENSAMXG00000012485	spen	99	47.911	ENSUAMG00000009600	SPEN	96	83.240	Ursus_americanus
ENSAMXG00000012485	spen	99	46.807	ENSUMAG00000021641	SPEN	96	77.848	Ursus_maritimus
ENSAMXG00000012485	spen	91	100.000	ENSVVUG00000028951	SPEN	85	100.000	Vulpes_vulpes
ENSAMXG00000012485	spen	92	76.562	ENSXCOG00000004516	si:ch1073-335m2.2	99	76.562	Xiphophorus_couchianus
ENSAMXG00000012485	spen	100	53.939	ENSXMAG00000021384	-	87	83.799	Xiphophorus_maculatus
ENSAMXG00000012485	spen	92	77.540	ENSXMAG00000029887	si:ch1073-335m2.2	99	77.540	Xiphophorus_maculatus