EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012606 (Gene tree)
Gene ID: 103024216
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8233 bases
Position: chr13:10683087-10691319
Accession: 103024216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012958	RRM_1	PF00076.22	5e-07	1	1
ENSAMXP00000012958	RRM_3	PF08777.11	3.1e-27	1	1
ENSAMXP00000012958	La	PF05383.17	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012958	-	2580	XM_007244147	ENSAMXP00000012958	405 (aa)	XP_007244209	W5KZE6

Gene Model

Click here to download ENSAMXG00000012606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012606's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012606	ssb	100	55.932	ENSG00000138385	SSB	98	58.120	Homo_sapiens
ENSAMXG00000012606	ssb	100	62.592	ENSAPOG00000003448	ssb	100	61.125	Acanthochromis_polyacanthus
ENSAMXG00000012606	ssb	100	54.953	ENSAMEG00000010507	SSB	98	54.067	Ailuropoda_melanoleuca
ENSAMXG00000012606	ssb	92	60.638	ENSACIG00000001738	ssb	84	70.435	Amphilophus_citrinellus
ENSAMXG00000012606	ssb	100	62.836	ENSAOCG00000020398	ssb	100	61.858	Amphiprion_ocellaris
ENSAMXG00000012606	ssb	100	63.081	ENSAPEG00000020395	ssb	100	61.614	Amphiprion_percula
ENSAMXG00000012606	ssb	100	63.902	ENSATEG00000016884	ssb	100	62.195	Anabas_testudineus
ENSAMXG00000012606	ssb	100	54.118	ENSAPLG00000006109	SSB	97	52.885	Anas_platyrhynchos
ENSAMXG00000012606	ssb	100	53.865	ENSACAG00000017008	SSB	97	53.580	Anolis_carolinensis
ENSAMXG00000012606	ssb	100	50.728	ENSANAG00000027195	-	98	49.265	Aotus_nancymaae
ENSAMXG00000012606	ssb	100	57.805	ENSACLG00000010798	ssb	100	57.317	Astatotilapia_calliptera
ENSAMXG00000012606	ssb	100	56.039	ENSBTAG00000008716	SSB	98	54.902	Bos_taurus
ENSAMXG00000012606	ssb	73	32.353	WBGene00016653	C44E4.4	76	35.065	Caenorhabditis_elegans
ENSAMXG00000012606	ssb	100	55.904	ENSCJAG00000045073	SSB	98	54.412	Callithrix_jacchus
ENSAMXG00000012606	ssb	100	55.932	ENSCAFG00000012418	SSB	98	54.902	Canis_familiaris
ENSAMXG00000012606	ssb	100	55.932	ENSCAFG00020002900	SSB	98	54.902	Canis_lupus_dingo
ENSAMXG00000012606	ssb	100	51.582	ENSCHIG00000022196	-	82	56.173	Capra_hircus
ENSAMXG00000012606	ssb	100	56.039	ENSCHIG00000022624	-	98	54.902	Capra_hircus
ENSAMXG00000012606	ssb	99	55.825	ENSTSYG00000000097	SSB	98	54.791	Carlito_syrichta
ENSAMXG00000012606	ssb	100	56.901	ENSCPOG00000003338	SSB	98	55.392	Cavia_porcellus
ENSAMXG00000012606	ssb	100	56.145	ENSCCAG00000035147	SSB	98	54.902	Cebus_capucinus
ENSAMXG00000012606	ssb	99	43.980	ENSCATG00000042909	-	98	42.157	Cercocebus_atys
ENSAMXG00000012606	ssb	72	55.333	ENSCATG00000036701	SSB	83	53.535	Cercocebus_atys
ENSAMXG00000012606	ssb	100	55.690	ENSCLAG00000015617	-	98	54.412	Chinchilla_lanigera
ENSAMXG00000012606	ssb	100	56.386	ENSCSAG00000015200	SSB	87	54.902	Chlorocebus_sabaeus
ENSAMXG00000012606	ssb	99	51.345	ENSCSAG00000018390	-	99	50.124	Chlorocebus_sabaeus
ENSAMXG00000012606	ssb	100	55.529	ENSCHOG00000007763	SSB	98	53.676	Choloepus_hoffmanni
ENSAMXG00000012606	ssb	100	58.354	ENSCPBG00000006519	SSB	98	57.702	Chrysemys_picta_bellii
ENSAMXG00000012606	ssb	100	50.000	ENSCANG00000033240	-	98	49.265	Colobus_angolensis_palliatus
ENSAMXG00000012606	ssb	100	56.386	ENSCANG00000027695	SSB	98	54.902	Colobus_angolensis_palliatus
ENSAMXG00000012606	ssb	97	45.885	ENSCANG00000028838	-	75	48.000	Colobus_angolensis_palliatus
ENSAMXG00000012606	ssb	100	48.832	ENSCGRG00001024831	Ssb	98	50.122	Cricetulus_griseus_chok1gshd
ENSAMXG00000012606	ssb	100	48.832	ENSCGRG00000005387	Ssb	98	50.122	Cricetulus_griseus_crigri
ENSAMXG00000012606	ssb	100	60.147	ENSCSEG00000011599	ssb	100	59.169	Cynoglossus_semilaevis
ENSAMXG00000012606	ssb	100	63.350	ENSCVAG00000021558	ssb	100	60.732	Cyprinodon_variegatus
ENSAMXG00000012606	ssb	100	74.817	ENSDARG00000029252	ssb	100	75.061	Danio_rerio
ENSAMXG00000012606	ssb	100	56.039	ENSDNOG00000013450	SSB	98	54.657	Dasypus_novemcinctus
ENSAMXG00000012606	ssb	100	51.691	ENSDORG00000005543	Ssb	98	51.707	Dipodomys_ordii
ENSAMXG00000012606	ssb	88	34.239	FBgn0011638	La	67	35.662	Drosophila_melanogaster
ENSAMXG00000012606	ssb	50	57.426	ENSETEG00000004614	-	52	57.426	Echinops_telfairi
ENSAMXG00000012606	ssb	94	45.939	ENSEBUG00000001237	ssb	83	49.383	Eptatretus_burgeri
ENSAMXG00000012606	ssb	100	56.971	ENSEASG00005022835	SSB	98	55.637	Equus_asinus_asinus
ENSAMXG00000012606	ssb	100	56.971	ENSECAG00000018495	SSB	98	55.637	Equus_caballus
ENSAMXG00000012606	ssb	74	45.215	ENSEEUG00000008077	SSB	77	44.816	Erinaceus_europaeus
ENSAMXG00000012606	ssb	100	66.422	ENSELUG00000020929	ssb	100	66.667	Esox_lucius
ENSAMXG00000012606	ssb	100	56.416	ENSFCAG00000011601	SSB	98	55.637	Felis_catus
ENSAMXG00000012606	ssb	99	56.796	ENSFALG00000000930	SSB	99	54.988	Ficedula_albicollis
ENSAMXG00000012606	ssb	100	56.659	ENSFDAG00000000598	SSB	98	55.392	Fukomys_damarensis
ENSAMXG00000012606	ssb	73	58.553	ENSFHEG00000003268	ssb	92	57.947	Fundulus_heteroclitus
ENSAMXG00000012606	ssb	99	57.598	ENSGMOG00000002664	ssb	100	57.353	Gadus_morhua
ENSAMXG00000012606	ssb	99	56.522	ENSGALG00000009677	SSB	97	55.473	Gallus_gallus
ENSAMXG00000012606	ssb	100	61.463	ENSGAFG00000002749	ssb	100	61.220	Gambusia_affinis
ENSAMXG00000012606	ssb	100	58.993	ENSGACG00000005107	ssb	100	56.763	Gasterosteus_aculeatus
ENSAMXG00000012606	ssb	100	58.111	ENSGAGG00000007807	SSB	98	57.946	Gopherus_agassizii
ENSAMXG00000012606	ssb	55	55.507	ENSGGOG00000023471	-	90	53.982	Gorilla_gorilla
ENSAMXG00000012606	ssb	99	47.666	ENSGGOG00000024891	-	97	46.420	Gorilla_gorilla
ENSAMXG00000012606	ssb	100	58.537	ENSHBUG00000006584	ssb	100	58.049	Haplochromis_burtoni
ENSAMXG00000012606	ssb	100	56.490	ENSHGLG00000017580	-	98	54.745	Heterocephalus_glaber_female
ENSAMXG00000012606	ssb	99	52.099	ENSHGLG00000004478	-	98	50.732	Heterocephalus_glaber_female
ENSAMXG00000012606	ssb	94	51.795	ENSHGLG00000005832	-	98	48.775	Heterocephalus_glaber_female
ENSAMXG00000012606	ssb	100	56.490	ENSHGLG00100003084	-	98	54.745	Heterocephalus_glaber_male
ENSAMXG00000012606	ssb	100	51.825	ENSHGLG00100008767	-	98	50.370	Heterocephalus_glaber_male
ENSAMXG00000012606	ssb	99	57.037	ENSHCOG00000019011	ssb	99	57.531	Hippocampus_comes
ENSAMXG00000012606	ssb	100	79.805	ENSIPUG00000003681	SSB	100	80.535	Ictalurus_punctatus
ENSAMXG00000012606	ssb	100	56.659	ENSSTOG00000008416	SSB	98	55.147	Ictidomys_tridecemlineatus
ENSAMXG00000012606	ssb	100	50.820	ENSJJAG00000023158	-	99	50.235	Jaculus_jaculus
ENSAMXG00000012606	ssb	90	46.027	ENSJJAG00000016250	-	94	45.055	Jaculus_jaculus
ENSAMXG00000012606	ssb	100	62.683	ENSKMAG00000017317	ssb	100	60.732	Kryptolebias_marmoratus
ENSAMXG00000012606	ssb	100	62.103	ENSLBEG00000017345	ssb	100	61.369	Labrus_bergylta
ENSAMXG00000012606	ssb	99	56.188	ENSLACG00000014056	SSB	97	55.941	Latimeria_chalumnae
ENSAMXG00000012606	ssb	99	64.938	ENSLOCG00000007933	ssb	98	64.198	Lepisosteus_oculatus
ENSAMXG00000012606	ssb	100	46.829	ENSLAFG00000028909	-	99	46.078	Loxodonta_africana
ENSAMXG00000012606	ssb	72	41.980	ENSLAFG00000026721	-	96	41.980	Loxodonta_africana
ENSAMXG00000012606	ssb	100	51.765	ENSLAFG00000000867	-	98	51.905	Loxodonta_africana
ENSAMXG00000012606	ssb	88	49.176	ENSMFAG00000041478	-	90	51.235	Macaca_fascicularis
ENSAMXG00000012606	ssb	100	56.386	ENSMFAG00000039066	SSB	98	54.902	Macaca_fascicularis
ENSAMXG00000012606	ssb	100	56.386	ENSMMUG00000023051	SSB	98	54.902	Macaca_mulatta
ENSAMXG00000012606	ssb	99	41.523	ENSMMUG00000039889	-	98	40.441	Macaca_mulatta
ENSAMXG00000012606	ssb	100	48.551	ENSMMUG00000011724	-	77	52.469	Macaca_mulatta
ENSAMXG00000012606	ssb	100	48.551	ENSMNEG00000028321	SSB	98	47.433	Macaca_nemestrina
ENSAMXG00000012606	ssb	88	49.176	ENSMNEG00000034698	-	90	51.235	Macaca_nemestrina
ENSAMXG00000012606	ssb	100	56.386	ENSMLEG00000035717	SSB	98	54.902	Mandrillus_leucophaeus
ENSAMXG00000012606	ssb	100	41.063	ENSMLEG00000042644	-	78	42.593	Mandrillus_leucophaeus
ENSAMXG00000012606	ssb	100	60.732	ENSMAMG00000004800	ssb	100	59.268	Mastacembelus_armatus
ENSAMXG00000012606	ssb	100	57.805	ENSMZEG00005005749	ssb	100	57.317	Maylandia_zebra
ENSAMXG00000012606	ssb	99	56.068	ENSMGAG00000010328	SSB	100	57.971	Meleagris_gallopavo
ENSAMXG00000012606	ssb	100	56.174	ENSMICG00000028252	-	98	55.392	Microcebus_murinus
ENSAMXG00000012606	ssb	99	50.856	ENSMICG00000033304	-	91	52.603	Microcebus_murinus
ENSAMXG00000012606	ssb	92	53.747	ENSMODG00000008227	-	98	52.657	Monodelphis_domestica
ENSAMXG00000012606	ssb	92	48.421	ENSMODG00000019271	-	98	46.683	Monodelphis_domestica
ENSAMXG00000012606	ssb	100	41.262	ENSMODG00000007027	-	98	40.931	Monodelphis_domestica
ENSAMXG00000012606	ssb	89	61.749	ENSMALG00000008045	ssb	88	61.749	Monopterus_albus
ENSAMXG00000012606	ssb	100	50.824	MGP_CAROLIEiJ_G0023629	-	96	58.553	Mus_caroli
ENSAMXG00000012606	ssb	100	50.353	ENSMUSG00000068882	Ssb	96	58.553	Mus_musculus
ENSAMXG00000012606	ssb	100	50.704	MGP_PahariEiJ_G0025081	-	96	58.553	Mus_pahari
ENSAMXG00000012606	ssb	100	50.353	MGP_SPRETEiJ_G0024551	Ssb	96	58.553	Mus_spretus
ENSAMXG00000012606	ssb	100	56.659	ENSMPUG00000000785	SSB	98	55.637	Mustela_putorius_furo
ENSAMXG00000012606	ssb	100	54.739	ENSMLUG00000016316	SSB	99	53.318	Myotis_lucifugus
ENSAMXG00000012606	ssb	100	58.293	ENSNBRG00000012661	ssb	100	57.908	Neolamprologus_brichardi
ENSAMXG00000012606	ssb	100	56.145	ENSNLEG00000004958	SSB	98	54.657	Nomascus_leucogenys
ENSAMXG00000012606	ssb	83	45.322	ENSNLEG00000028754	-	77	46.154	Nomascus_leucogenys
ENSAMXG00000012606	ssb	61	60.643	ENSMEUG00000001650	-	100	60.643	Notamacropus_eugenii
ENSAMXG00000012606	ssb	51	58.491	ENSOPRG00000008475	-	54	57.692	Ochotona_princeps
ENSAMXG00000012606	ssb	94	54.427	ENSODEG00000004202	-	99	53.646	Octodon_degus
ENSAMXG00000012606	ssb	100	57.561	ENSONIG00000008776	ssb	100	57.561	Oreochromis_niloticus
ENSAMXG00000012606	ssb	98	55.500	ENSOANG00000008543	SSB	96	55.500	Ornithorhynchus_anatinus
ENSAMXG00000012606	ssb	100	55.690	ENSOCUG00000010396	SSB	98	54.657	Oryctolagus_cuniculus
ENSAMXG00000012606	ssb	100	62.195	ENSORLG00000017208	ssb	100	61.220	Oryzias_latipes
ENSAMXG00000012606	ssb	100	61.707	ENSORLG00020022574	ssb	100	60.976	Oryzias_latipes_hni
ENSAMXG00000012606	ssb	100	61.951	ENSORLG00015016592	ssb	100	60.976	Oryzias_latipes_hsok
ENSAMXG00000012606	ssb	100	63.325	ENSOMEG00000003193	ssb	100	62.347	Oryzias_melastigma
ENSAMXG00000012606	ssb	100	54.206	ENSOGAG00000029768	SSB	98	52.494	Otolemur_garnettii
ENSAMXG00000012606	ssb	100	56.280	ENSOARG00000002906	SSB	98	55.147	Ovis_aries
ENSAMXG00000012606	ssb	100	48.068	ENSPPAG00000032427	-	96	52.419	Pan_paniscus
ENSAMXG00000012606	ssb	92	44.909	ENSPPAG00000006189	-	89	44.382	Pan_paniscus
ENSAMXG00000012606	ssb	100	55.932	ENSPPAG00000042673	SSB	98	54.902	Pan_paniscus
ENSAMXG00000012606	ssb	100	56.416	ENSPPRG00000006599	SSB	98	55.637	Panthera_pardus
ENSAMXG00000012606	ssb	100	56.416	ENSPTIG00000011021	SSB	96	55.637	Panthera_tigris_altaica
ENSAMXG00000012606	ssb	100	55.932	ENSPTRG00000012620	SSB	98	54.902	Pan_troglodytes
ENSAMXG00000012606	ssb	100	46.024	ENSPTRG00000042880	-	99	44.794	Pan_troglodytes
ENSAMXG00000012606	ssb	100	56.386	ENSPANG00000007440	SSB	98	54.902	Papio_anubis
ENSAMXG00000012606	ssb	99	41.728	ENSPANG00000034126	-	98	40.931	Papio_anubis
ENSAMXG00000012606	ssb	96	40.657	ENSPANG00000031877	-	74	42.540	Papio_anubis
ENSAMXG00000012606	ssb	100	67.402	ENSPKIG00000019325	ssb	99	66.176	Paramormyrops_kingsleyae
ENSAMXG00000012606	ssb	100	58.596	ENSPSIG00000002265	SSB	92	57.946	Pelodiscus_sinensis
ENSAMXG00000012606	ssb	86	57.714	ENSPMGG00000020075	ssb	78	58.000	Periophthalmus_magnuspinnatus
ENSAMXG00000012606	ssb	87	50.000	ENSPMAG00000002982	ssb	83	50.833	Petromyzon_marinus
ENSAMXG00000012606	ssb	96	55.611	ENSPCIG00000028591	-	98	55.392	Phascolarctos_cinereus
ENSAMXG00000012606	ssb	100	62.439	ENSPFOG00000009650	ssb	100	61.707	Poecilia_formosa
ENSAMXG00000012606	ssb	100	61.951	ENSPLAG00000020498	ssb	100	61.707	Poecilia_latipinna
ENSAMXG00000012606	ssb	100	62.195	ENSPMEG00000001051	ssb	100	61.463	Poecilia_mexicana
ENSAMXG00000012606	ssb	91	63.733	ENSPREG00000003708	ssb	96	63.215	Poecilia_reticulata
ENSAMXG00000012606	ssb	100	56.145	ENSPPYG00000012919	SSB	98	54.657	Pongo_abelii
ENSAMXG00000012606	ssb	95	54.103	ENSPCAG00000010276	SSB	99	53.846	Procavia_capensis
ENSAMXG00000012606	ssb	100	49.637	ENSPCOG00000023189	-	98	48.529	Propithecus_coquereli
ENSAMXG00000012606	ssb	98	54.250	ENSPCOG00000015741	-	96	53.383	Propithecus_coquereli
ENSAMXG00000012606	ssb	86	58.357	ENSPVAG00000006615	SSB	87	60.586	Pteropus_vampyrus
ENSAMXG00000012606	ssb	100	58.049	ENSPNYG00000006444	ssb	100	57.561	Pundamilia_nyererei
ENSAMXG00000012606	ssb	100	84.634	ENSPNAG00000011708	ssb	100	84.390	Pygocentrus_nattereri
ENSAMXG00000012606	ssb	100	50.118	ENSRNOG00000007998	Ssb	98	48.333	Rattus_norvegicus
ENSAMXG00000012606	ssb	99	49.879	ENSRNOG00000011606	AABR07061825.1	98	48.529	Rattus_norvegicus
ENSAMXG00000012606	ssb	100	47.494	ENSRBIG00000041972	SSB	98	47.330	Rhinopithecus_bieti
ENSAMXG00000012606	ssb	99	42.157	ENSRBIG00000029918	-	98	40.587	Rhinopithecus_bieti
ENSAMXG00000012606	ssb	94	49.742	ENSRBIG00000041232	-	98	48.964	Rhinopithecus_bieti
ENSAMXG00000012606	ssb	87	51.111	ENSRBIG00000041608	-	94	49.438	Rhinopithecus_bieti
ENSAMXG00000012606	ssb	99	50.123	ENSRROG00000031684	-	99	49.380	Rhinopithecus_roxellana
ENSAMXG00000012606	ssb	99	47.794	ENSRROG00000007149	-	98	46.210	Rhinopithecus_roxellana
ENSAMXG00000012606	ssb	100	56.386	ENSRROG00000040346	SSB	98	54.902	Rhinopithecus_roxellana
ENSAMXG00000012606	ssb	87	54.596	ENSRROG00000034102	-	85	53.090	Rhinopithecus_roxellana
ENSAMXG00000012606	ssb	100	56.386	ENSSBOG00000027204	SSB	98	54.902	Saimiri_boliviensis_boliviensis
ENSAMXG00000012606	ssb	100	54.612	ENSSHAG00000018062	SSB	98	55.392	Sarcophilus_harrisii
ENSAMXG00000012606	ssb	100	67.237	ENSSFOG00015000550	ssb	99	65.770	Scleropages_formosus
ENSAMXG00000012606	ssb	100	58.333	ENSSMAG00000013885	ssb	98	63.661	Scophthalmus_maximus
ENSAMXG00000012606	ssb	100	61.707	ENSSDUG00000020117	ssb	100	60.488	Seriola_dumerili
ENSAMXG00000012606	ssb	100	59.413	ENSSLDG00000002525	ssb	100	58.191	Seriola_lalandi_dorsalis
ENSAMXG00000012606	ssb	95	51.662	ENSSARG00000007747	SSB	99	50.769	Sorex_araneus
ENSAMXG00000012606	ssb	100	57.488	ENSSPUG00000012112	SSB	98	56.373	Sphenodon_punctatus
ENSAMXG00000012606	ssb	100	62.347	ENSSPAG00000005696	ssb	100	60.636	Stegastes_partitus
ENSAMXG00000012606	ssb	90	51.622	ENSSSCG00000015938	SSB	81	53.846	Sus_scrofa
ENSAMXG00000012606	ssb	94	56.923	ENSTGUG00000007942	SSB	99	55.825	Taeniopygia_guttata
ENSAMXG00000012606	ssb	100	60.244	ENSTRUG00000017839	ssb	100	59.024	Takifugu_rubripes
ENSAMXG00000012606	ssb	90	60.976	ENSTNIG00000000915	ssb	91	64.506	Tetraodon_nigroviridis
ENSAMXG00000012606	ssb	82	59.130	ENSTBEG00000009056	SSB	80	58.559	Tupaia_belangeri
ENSAMXG00000012606	ssb	100	56.416	ENSTTRG00000002152	SSB	98	54.902	Tursiops_truncatus
ENSAMXG00000012606	ssb	91	58.133	ENSUAMG00000027833	SSB	95	56.986	Ursus_americanus
ENSAMXG00000012606	ssb	100	56.145	ENSUMAG00000013907	SSB	98	55.147	Ursus_maritimus
ENSAMXG00000012606	ssb	100	55.448	ENSVPAG00000007183	SSB	98	54.412	Vicugna_pacos
ENSAMXG00000012606	ssb	100	55.932	ENSVVUG00000016573	SSB	76	54.657	Vulpes_vulpes
ENSAMXG00000012606	ssb	98	51.551	ENSXETG00000025402	ssb	97	49.881	Xenopus_tropicalis
ENSAMXG00000012606	ssb	91	61.290	ENSXCOG00000019109	ssb	93	66.667	Xiphophorus_couchianus
ENSAMXG00000012606	ssb	100	61.220	ENSXMAG00000004888	ssb	100	60.976	Xiphophorus_maculatus