EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000012777 (Gene tree)
Gene ID: 103036648
Gene Symbol: rad54l
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 11276 bases
Position: chr13:10504085-10515360
Accession: 103036648
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000013166	ResIII	PF04851.15	2.9e-08	1	1
ENSAMXP00000013166	DEAD	PF00270.29	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000013166	-	4486	XM_022675392	ENSAMXP00000013166	742 (aa)	XP_022531113	W5L004

Gene Model

Click here to download ENSAMXG00000012777's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012777's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000012777	rad54l	58	30.501	ENSAMXG00000035908	-	87	30.283
ENSAMXG00000012777	rad54l	87	42.033	ENSAMXG00000039985	rad54b	87	41.882
ENSAMXG00000012777	rad54l	69	32.171	ENSAMXG00000011227	smarca1	53	32.008

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012777	rad54l	99	80.161	ENSG00000085999	RAD54L	100	86.667	Homo_sapiens
ENSAMXG00000012777	rad54l	99	84.959	ENSAPOG00000011643	rad54l	99	84.959	Acanthochromis_polyacanthus
ENSAMXG00000012777	rad54l	99	79.463	ENSAMEG00000013902	RAD54L	99	79.463	Ailuropoda_melanoleuca
ENSAMXG00000012777	rad54l	99	85.155	ENSACIG00000001939	rad54l	99	85.155	Amphilophus_citrinellus
ENSAMXG00000012777	rad54l	99	88.076	ENSAOCG00000017576	rad54l	99	88.076	Amphiprion_ocellaris
ENSAMXG00000012777	rad54l	95	89.093	ENSAPEG00000020658	rad54l	98	89.093	Amphiprion_percula
ENSAMXG00000012777	rad54l	94	88.445	ENSATEG00000006767	rad54l	99	88.445	Anabas_testudineus
ENSAMXG00000012777	rad54l	94	84.957	ENSAPLG00000006389	RAD54L	99	84.957	Anas_platyrhynchos
ENSAMXG00000012777	rad54l	99	83.019	ENSACAG00000002312	RAD54L	99	83.019	Anolis_carolinensis
ENSAMXG00000012777	rad54l	99	80.295	ENSANAG00000035439	RAD54L	99	80.295	Aotus_nancymaae
ENSAMXG00000012777	rad54l	100	83.962	ENSACLG00000018711	rad54l	100	83.962	Astatotilapia_calliptera
ENSAMXG00000012777	rad54l	99	80.589	ENSBTAG00000019901	RAD54L	99	80.589	Bos_taurus
ENSAMXG00000012777	rad54l	93	58.297	WBGene00004298	rad-54	84	57.431	Caenorhabditis_elegans
ENSAMXG00000012777	rad54l	99	77.971	ENSCJAG00000021080	RAD54L	95	77.704	Callithrix_jacchus
ENSAMXG00000012777	rad54l	99	80.027	ENSCAFG00000004272	RAD54L	99	80.027	Canis_familiaris
ENSAMXG00000012777	rad54l	99	80.000	ENSCAFG00020015066	RAD54L	99	80.000	Canis_lupus_dingo
ENSAMXG00000012777	rad54l	99	80.965	ENSCHIG00000020118	RAD54L	99	80.965	Capra_hircus
ENSAMXG00000012777	rad54l	99	79.491	ENSTSYG00000002032	RAD54L	99	79.491	Carlito_syrichta
ENSAMXG00000012777	rad54l	99	80.831	ENSCPOG00000006768	RAD54L	99	80.831	Cavia_porcellus
ENSAMXG00000012777	rad54l	99	80.563	ENSCCAG00000025783	RAD54L	99	80.563	Cebus_capucinus
ENSAMXG00000012777	rad54l	99	80.429	ENSCATG00000030589	RAD54L	99	80.429	Cercocebus_atys
ENSAMXG00000012777	rad54l	99	80.831	ENSCLAG00000004645	RAD54L	99	80.831	Chinchilla_lanigera
ENSAMXG00000012777	rad54l	99	80.295	ENSCSAG00000001229	RAD54L	99	80.295	Chlorocebus_sabaeus
ENSAMXG00000012777	rad54l	99	83.423	ENSCPBG00000005675	RAD54L	99	83.423	Chrysemys_picta_bellii
ENSAMXG00000012777	rad54l	100	63.320	ENSCING00000024456	-	100	63.192	Ciona_intestinalis
ENSAMXG00000012777	rad54l	100	63.755	ENSCSAVG00000010859	-	100	63.885	Ciona_savignyi
ENSAMXG00000012777	rad54l	99	80.295	ENSCANG00000034891	RAD54L	99	80.295	Colobus_angolensis_palliatus
ENSAMXG00000012777	rad54l	99	79.812	ENSCGRG00001014807	Rad54l	99	79.812	Cricetulus_griseus_chok1gshd
ENSAMXG00000012777	rad54l	99	79.812	ENSCGRG00000016038	Rad54l	99	79.812	Cricetulus_griseus_crigri
ENSAMXG00000012777	rad54l	99	84.865	ENSCSEG00000001983	rad54l	99	84.865	Cynoglossus_semilaevis
ENSAMXG00000012777	rad54l	77	88.211	ENSCVAG00000019561	rad54l	100	86.454	Cyprinodon_variegatus
ENSAMXG00000012777	rad54l	100	89.892	ENSDARG00000018623	rad54l	100	89.892	Danio_rerio
ENSAMXG00000012777	rad54l	99	79.625	ENSDNOG00000003395	RAD54L	99	79.518	Dasypus_novemcinctus
ENSAMXG00000012777	rad54l	99	72.583	ENSDORG00000002632	Rad54l	99	72.606	Dipodomys_ordii
ENSAMXG00000012777	rad54l	99	55.364	FBgn0002989	okr	95	55.364	Drosophila_melanogaster
ENSAMXG00000012777	rad54l	77	79.956	ENSETEG00000000550	RAD54L	78	79.956	Echinops_telfairi
ENSAMXG00000012777	rad54l	99	79.597	ENSEASG00005004511	RAD54L	99	80.000	Equus_asinus_asinus
ENSAMXG00000012777	rad54l	99	80.027	ENSECAG00000008760	RAD54L	99	80.429	Equus_caballus
ENSAMXG00000012777	rad54l	99	77.078	ENSEEUG00000008113	RAD54L	99	77.078	Erinaceus_europaeus
ENSAMXG00000012777	rad54l	100	89.439	ENSELUG00000002295	rad54l	100	89.572	Esox_lucius
ENSAMXG00000012777	rad54l	99	78.954	ENSFCAG00000003444	RAD54L	99	78.954	Felis_catus
ENSAMXG00000012777	rad54l	99	83.154	ENSFALG00000009480	RAD54L	99	83.154	Ficedula_albicollis
ENSAMXG00000012777	rad54l	99	80.161	ENSFDAG00000007806	RAD54L	99	80.161	Fukomys_damarensis
ENSAMXG00000012777	rad54l	65	80.417	ENSFHEG00000009824	rad54l	83	80.417	Fundulus_heteroclitus
ENSAMXG00000012777	rad54l	99	86.640	ENSGMOG00000014568	rad54l	100	86.640	Gadus_morhua
ENSAMXG00000012777	rad54l	99	82.930	ENSGALG00000010356	RAD54L	92	82.930	Gallus_gallus
ENSAMXG00000012777	rad54l	91	83.432	ENSGAFG00000011110	rad54l	100	83.432	Gambusia_affinis
ENSAMXG00000012777	rad54l	100	86.003	ENSGACG00000003111	rad54l	98	86.003	Gasterosteus_aculeatus
ENSAMXG00000012777	rad54l	99	82.726	ENSGAGG00000014089	RAD54L	96	82.726	Gopherus_agassizii
ENSAMXG00000012777	rad54l	99	79.893	ENSGGOG00000010602	RAD54L	99	79.893	Gorilla_gorilla
ENSAMXG00000012777	rad54l	100	84.232	ENSHBUG00000007793	rad54l	100	84.232	Haplochromis_burtoni
ENSAMXG00000012777	rad54l	99	80.295	ENSHGLG00000000753	RAD54L	99	80.295	Heterocephalus_glaber_female
ENSAMXG00000012777	rad54l	99	80.161	ENSHGLG00100016987	RAD54L	99	80.161	Heterocephalus_glaber_male
ENSAMXG00000012777	rad54l	100	90.848	ENSIPUG00000015999	rad54l	100	92.970	Ictalurus_punctatus
ENSAMXG00000012777	rad54l	99	79.357	ENSSTOG00000029125	RAD54L	99	79.357	Ictidomys_tridecemlineatus
ENSAMXG00000012777	rad54l	99	67.383	ENSJJAG00000000235	-	99	67.248	Jaculus_jaculus
ENSAMXG00000012777	rad54l	100	85.310	ENSKMAG00000009944	rad54l	100	85.310	Kryptolebias_marmoratus
ENSAMXG00000012777	rad54l	99	87.686	ENSLBEG00000014617	rad54l	97	90.327	Labrus_bergylta
ENSAMXG00000012777	rad54l	99	87.466	ENSLOCG00000004144	rad54l	100	88.131	Lepisosteus_oculatus
ENSAMXG00000012777	rad54l	99	79.732	ENSLAFG00000007583	RAD54L	99	80.134	Loxodonta_africana
ENSAMXG00000012777	rad54l	99	80.429	ENSMFAG00000031241	RAD54L	99	80.429	Macaca_fascicularis
ENSAMXG00000012777	rad54l	99	80.429	ENSMMUG00000011568	RAD54L	99	80.429	Macaca_mulatta
ENSAMXG00000012777	rad54l	99	80.295	ENSMNEG00000038562	RAD54L	99	80.295	Macaca_nemestrina
ENSAMXG00000012777	rad54l	99	80.429	ENSMLEG00000038145	RAD54L	99	80.429	Mandrillus_leucophaeus
ENSAMXG00000012777	rad54l	99	85.521	ENSMAMG00000022180	rad54l	99	88.183	Mastacembelus_armatus
ENSAMXG00000012777	rad54l	100	83.827	ENSMZEG00005018081	rad54l	100	83.827	Maylandia_zebra
ENSAMXG00000012777	rad54l	99	82.907	ENSMGAG00000010634	RAD54L	99	82.907	Meleagris_gallopavo
ENSAMXG00000012777	rad54l	99	80.350	ENSMAUG00000020076	Rad54l	99	80.350	Mesocricetus_auratus
ENSAMXG00000012777	rad54l	99	80.965	ENSMICG00000003266	RAD54L	99	80.965	Microcebus_murinus
ENSAMXG00000012777	rad54l	99	79.946	ENSMOCG00000001778	Rad54l	99	79.946	Microtus_ochrogaster
ENSAMXG00000012777	rad54l	99	83.288	ENSMALG00000021148	rad54l	99	83.288	Monopterus_albus
ENSAMXG00000012777	rad54l	99	76.010	MGP_CAROLIEiJ_G0026325	Rad54l	99	76.010	Mus_caroli
ENSAMXG00000012777	rad54l	99	80.027	ENSMUSG00000028702	Rad54l	99	80.027	Mus_musculus
ENSAMXG00000012777	rad54l	99	80.000	MGP_PahariEiJ_G0028657	Rad54l	99	80.000	Mus_pahari
ENSAMXG00000012777	rad54l	99	80.161	MGP_SPRETEiJ_G0027297	Rad54l	99	80.161	Mus_spretus
ENSAMXG00000012777	rad54l	99	79.759	ENSMPUG00000012883	RAD54L	99	79.759	Mustela_putorius_furo
ENSAMXG00000012777	rad54l	99	80.268	ENSMLUG00000003763	RAD54L	99	80.268	Myotis_lucifugus
ENSAMXG00000012777	rad54l	99	79.625	ENSNGAG00000024213	Rad54l	99	79.625	Nannospalax_galili
ENSAMXG00000012777	rad54l	99	79.491	ENSNLEG00000016548	RAD54L	99	79.491	Nomascus_leucogenys
ENSAMXG00000012777	rad54l	91	79.822	ENSMEUG00000006793	RAD54L	100	79.822	Notamacropus_eugenii
ENSAMXG00000012777	rad54l	90	82.168	ENSOPRG00000016016	RAD54L	90	82.168	Ochotona_princeps
ENSAMXG00000012777	rad54l	99	80.563	ENSODEG00000008519	RAD54L	99	80.563	Octodon_degus
ENSAMXG00000012777	rad54l	100	83.827	ENSONIG00000007659	rad54l	100	83.827	Oreochromis_niloticus
ENSAMXG00000012777	rad54l	99	80.161	ENSOCUG00000005229	RAD54L	99	80.054	Oryctolagus_cuniculus
ENSAMXG00000012777	rad54l	100	84.771	ENSORLG00000002958	rad54l	100	84.906	Oryzias_latipes
ENSAMXG00000012777	rad54l	99	85.155	ENSORLG00020006554	rad54l	99	87.812	Oryzias_latipes_hni
ENSAMXG00000012777	rad54l	100	84.906	ENSORLG00015002907	rad54l	100	85.040	Oryzias_latipes_hsok
ENSAMXG00000012777	rad54l	99	85.020	ENSOMEG00000007770	rad54l	99	85.020	Oryzias_melastigma
ENSAMXG00000012777	rad54l	99	81.016	ENSOARG00000002264	RAD54L	99	81.016	Ovis_aries
ENSAMXG00000012777	rad54l	99	79.893	ENSPPAG00000031222	RAD54L	99	79.893	Pan_paniscus
ENSAMXG00000012777	rad54l	99	78.954	ENSPPRG00000010317	RAD54L	99	78.954	Panthera_pardus
ENSAMXG00000012777	rad54l	99	78.954	ENSPTIG00000012200	RAD54L	99	78.954	Panthera_tigris_altaica
ENSAMXG00000012777	rad54l	99	79.893	ENSPTRG00000000689	RAD54L	99	79.893	Pan_troglodytes
ENSAMXG00000012777	rad54l	99	80.429	ENSPANG00000016295	RAD54L	99	80.429	Papio_anubis
ENSAMXG00000012777	rad54l	99	79.026	ENSPKIG00000016172	rad54l	99	79.026	Paramormyrops_kingsleyae
ENSAMXG00000012777	rad54l	99	83.765	ENSPSIG00000003258	RAD54L	99	83.765	Pelodiscus_sinensis
ENSAMXG00000012777	rad54l	99	79.757	ENSPMGG00000016335	rad54l	99	79.757	Periophthalmus_magnuspinnatus
ENSAMXG00000012777	rad54l	99	79.812	ENSPEMG00000011422	Rad54l	99	79.812	Peromyscus_maniculatus_bairdii
ENSAMXG00000012777	rad54l	99	71.123	ENSPMAG00000007719	rad54l	99	71.123	Petromyzon_marinus
ENSAMXG00000012777	rad54l	100	80.805	ENSPCIG00000029032	RAD54L	100	80.805	Phascolarctos_cinereus
ENSAMXG00000012777	rad54l	86	86.929	ENSPFOG00000013732	rad54l	99	86.929	Poecilia_formosa
ENSAMXG00000012777	rad54l	82	85.065	ENSPLAG00000023416	rad54l	99	83.766	Poecilia_latipinna
ENSAMXG00000012777	rad54l	91	84.024	ENSPMEG00000008299	rad54l	100	84.024	Poecilia_mexicana
ENSAMXG00000012777	rad54l	100	82.615	ENSPREG00000019955	rad54l	100	82.615	Poecilia_reticulata
ENSAMXG00000012777	rad54l	99	68.407	ENSPPYG00000001398	RAD54L	99	68.407	Pongo_abelii
ENSAMXG00000012777	rad54l	80	82.524	ENSPCAG00000005323	RAD54L	79	83.333	Procavia_capensis
ENSAMXG00000012777	rad54l	99	80.697	ENSPCOG00000015423	RAD54L	99	80.697	Propithecus_coquereli
ENSAMXG00000012777	rad54l	99	80.133	ENSPNYG00000002942	rad54l	99	80.133	Pundamilia_nyererei
ENSAMXG00000012777	rad54l	100	94.879	ENSPNAG00000012483	rad54l	100	94.879	Pygocentrus_nattereri
ENSAMXG00000012777	rad54l	99	80.161	ENSRNOG00000013148	Rad54l	99	80.161	Rattus_norvegicus
ENSAMXG00000012777	rad54l	99	80.295	ENSRBIG00000043495	RAD54L	99	80.295	Rhinopithecus_bieti
ENSAMXG00000012777	rad54l	99	80.429	ENSRROG00000020844	RAD54L	99	80.429	Rhinopithecus_roxellana
ENSAMXG00000012777	rad54l	80	48.382	YGL163C	RAD54	70	48.674	Saccharomyces_cerevisiae
ENSAMXG00000012777	rad54l	99	80.563	ENSSBOG00000024672	RAD54L	99	80.563	Saimiri_boliviensis_boliviensis
ENSAMXG00000012777	rad54l	99	81.611	ENSSHAG00000000110	RAD54L	99	81.611	Sarcophilus_harrisii
ENSAMXG00000012777	rad54l	100	86.792	ENSSDUG00000019147	rad54l	100	86.792	Seriola_dumerili
ENSAMXG00000012777	rad54l	100	86.792	ENSSLDG00000012330	rad54l	100	86.792	Seriola_lalandi_dorsalis
ENSAMXG00000012777	rad54l	84	78.365	ENSSARG00000006689	RAD54L	100	78.365	Sorex_araneus
ENSAMXG00000012777	rad54l	99	86.739	ENSSPAG00000011016	rad54l	99	86.739	Stegastes_partitus
ENSAMXG00000012777	rad54l	99	80.563	ENSSSCG00000003905	RAD54L	99	80.563	Sus_scrofa
ENSAMXG00000012777	rad54l	99	82.615	ENSTGUG00000008233	RAD54L	99	82.615	Taeniopygia_guttata
ENSAMXG00000012777	rad54l	99	82.615	ENSTRUG00000008410	rad54l	99	82.615	Takifugu_rubripes
ENSAMXG00000012777	rad54l	99	79.757	ENSTNIG00000004716	rad54l	99	79.839	Tetraodon_nigroviridis
ENSAMXG00000012777	rad54l	99	73.727	ENSTTRG00000006315	RAD54L	99	73.727	Tursiops_truncatus
ENSAMXG00000012777	rad54l	99	79.352	ENSUAMG00000011824	RAD54L	99	79.352	Ursus_americanus
ENSAMXG00000012777	rad54l	99	78.273	ENSUMAG00000023603	RAD54L	99	78.273	Ursus_maritimus
ENSAMXG00000012777	rad54l	99	79.893	ENSVVUG00000007201	RAD54L	99	79.893	Vulpes_vulpes
ENSAMXG00000012777	rad54l	96	78.261	ENSXETG00000004369	rad54l	99	78.261	Xenopus_tropicalis
ENSAMXG00000012777	rad54l	55	82.195	ENSXCOG00000016028	rad54l	82	84.350	Xiphophorus_couchianus