EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012812 (Gene tree)
Gene ID: 103036223
Gene Symbol: polr2f
Alias: HRBP14.4|RPB6
Full Name: RNA polymerase II subunit F
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10974 bases
Position: chrAPWO02002109.1:127691-138664
Accession: 103036223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000013174	RNA_pol_Rpb6	PF01192.22	1.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000013174	-	1449	XM_007238879	ENSAMXP00000013174	127 (aa)	XP_007238941	W5L012

Gene Model

Click here to download ENSAMXG00000012812's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03020	RNA polymerase	KEGG
amex04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012812's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012812	polr2f	100	89.764	ENSG00000100142	POLR2F	100	89.796	Homo_sapiens
ENSAMXG00000012812	polr2f	100	97.638	ENSAPOG00000002902	polr2f	100	97.638	Acanthochromis_polyacanthus
ENSAMXG00000012812	polr2f	100	88.976	ENSAMEG00000010331	POLR2F	100	88.976	Ailuropoda_melanoleuca
ENSAMXG00000012812	polr2f	100	97.638	ENSACIG00000000923	polr2f	100	97.638	Amphilophus_citrinellus
ENSAMXG00000012812	polr2f	100	98.425	ENSAOCG00000003182	polr2f	100	98.425	Amphiprion_ocellaris
ENSAMXG00000012812	polr2f	100	98.425	ENSAPEG00000012999	polr2f	100	98.425	Amphiprion_percula
ENSAMXG00000012812	polr2f	100	97.638	ENSATEG00000008929	polr2f	100	97.638	Anabas_testudineus
ENSAMXG00000012812	polr2f	80	89.109	ENSAPLG00000015235	POLR2F	85	88.679	Anas_platyrhynchos
ENSAMXG00000012812	polr2f	100	90.551	ENSACAG00000015288	POLR2F	100	90.551	Anolis_carolinensis
ENSAMXG00000012812	polr2f	100	89.764	ENSANAG00000020840	POLR2F	100	89.764	Aotus_nancymaae
ENSAMXG00000012812	polr2f	100	96.850	ENSACLG00000016129	polr2f	100	96.850	Astatotilapia_calliptera
ENSAMXG00000012812	polr2f	100	89.764	ENSBTAG00000004820	POLR2F	100	89.764	Bos_taurus
ENSAMXG00000012812	polr2f	63	77.500	WBGene00007355	rpb-6	74	66.990	Caenorhabditis_elegans
ENSAMXG00000012812	polr2f	100	89.764	ENSCJAG00000048241	POLR2F	100	89.764	Callithrix_jacchus
ENSAMXG00000012812	polr2f	100	88.976	ENSCAFG00000001437	POLR2F	100	88.976	Canis_familiaris
ENSAMXG00000012812	polr2f	83	89.623	ENSCHIG00000012907	POLR2F	83	89.623	Capra_hircus
ENSAMXG00000012812	polr2f	100	88.976	ENSTSYG00000008187	POLR2F	100	88.976	Carlito_syrichta
ENSAMXG00000012812	polr2f	83	89.623	ENSCAPG00000013419	POLR2F	83	89.623	Cavia_aperea
ENSAMXG00000012812	polr2f	100	89.764	ENSCPOG00000034094	POLR2F	100	89.764	Cavia_porcellus
ENSAMXG00000012812	polr2f	100	89.764	ENSCCAG00000036489	POLR2F	100	89.764	Cebus_capucinus
ENSAMXG00000012812	polr2f	100	89.764	ENSCATG00000041014	POLR2F	100	89.764	Cercocebus_atys
ENSAMXG00000012812	polr2f	100	89.764	ENSCLAG00000017167	POLR2F	100	89.764	Chinchilla_lanigera
ENSAMXG00000012812	polr2f	100	89.764	ENSCSAG00000006862	POLR2F	100	89.764	Chlorocebus_sabaeus
ENSAMXG00000012812	polr2f	83	90.566	ENSCPBG00000023030	POLR2F	54	90.566	Chrysemys_picta_bellii
ENSAMXG00000012812	polr2f	83	75.472	ENSCING00000019359	-	73	76.923	Ciona_intestinalis
ENSAMXG00000012812	polr2f	100	89.764	ENSCANG00000041884	POLR2F	100	89.764	Colobus_angolensis_palliatus
ENSAMXG00000012812	polr2f	100	89.764	ENSCGRG00001023541	POLR2F	100	89.764	Cricetulus_griseus_chok1gshd
ENSAMXG00000012812	polr2f	100	89.764	ENSCGRG00000011921	POLR2F	100	89.764	Cricetulus_griseus_crigri
ENSAMXG00000012812	polr2f	95	97.521	ENSCSEG00000006848	polr2f	95	97.521	Cynoglossus_semilaevis
ENSAMXG00000012812	polr2f	100	96.850	ENSCVAG00000010437	polr2f	100	96.850	Cyprinodon_variegatus
ENSAMXG00000012812	polr2f	100	96.063	ENSDARG00000036625	polr2f	100	96.063	Danio_rerio
ENSAMXG00000012812	polr2f	100	89.764	ENSDNOG00000005884	POLR2F	100	89.764	Dasypus_novemcinctus
ENSAMXG00000012812	polr2f	100	89.764	ENSDORG00000024789	Polr2f	100	89.764	Dipodomys_ordii
ENSAMXG00000012812	polr2f	78	70.588	FBgn0003275	RpII18	78	72.549	Drosophila_melanogaster
ENSAMXG00000012812	polr2f	77	66.327	ENSEBUG00000002842	-	90	63.462	Eptatretus_burgeri
ENSAMXG00000012812	polr2f	54	85.294	ENSEBUG00000008509	polr2f	70	85.294	Eptatretus_burgeri
ENSAMXG00000012812	polr2f	60	88.158	ENSEASG00005018802	-	68	88.158	Equus_asinus_asinus
ENSAMXG00000012812	polr2f	100	87.402	ENSEEUG00000011014	POLR2F	100	87.402	Erinaceus_europaeus
ENSAMXG00000012812	polr2f	100	94.488	ENSELUG00000000319	polr2f	100	94.488	Esox_lucius
ENSAMXG00000012812	polr2f	100	88.976	ENSFCAG00000002806	POLR2F	100	88.976	Felis_catus
ENSAMXG00000012812	polr2f	100	89.764	ENSFDAG00000009926	POLR2F	100	89.764	Fukomys_damarensis
ENSAMXG00000012812	polr2f	88	96.429	ENSFHEG00000005448	polr2f	84	97.170	Fundulus_heteroclitus
ENSAMXG00000012812	polr2f	100	88.189	ENSGMOG00000009967	polr2f	100	88.189	Gadus_morhua
ENSAMXG00000012812	polr2f	100	90.551	ENSGALG00000012291	POLR2F	100	90.551	Gallus_gallus
ENSAMXG00000012812	polr2f	100	97.638	ENSGAFG00000017573	polr2f	100	97.638	Gambusia_affinis
ENSAMXG00000012812	polr2f	100	92.126	ENSGACG00000007322	polr2f	100	92.126	Gasterosteus_aculeatus
ENSAMXG00000012812	polr2f	100	90.551	ENSGAGG00000021757	POLR2F	100	90.551	Gopherus_agassizii
ENSAMXG00000012812	polr2f	100	89.764	ENSGGOG00000005213	POLR2F	100	89.764	Gorilla_gorilla
ENSAMXG00000012812	polr2f	100	96.850	ENSHBUG00000022089	polr2f	100	96.850	Haplochromis_burtoni
ENSAMXG00000012812	polr2f	100	89.764	ENSHGLG00000018942	POLR2F	100	89.764	Heterocephalus_glaber_female
ENSAMXG00000012812	polr2f	100	89.764	ENSHGLG00100012851	POLR2F	100	89.764	Heterocephalus_glaber_male
ENSAMXG00000012812	polr2f	100	93.701	ENSHCOG00000006149	polr2f	100	93.701	Hippocampus_comes
ENSAMXG00000012812	polr2f	76	97.938	ENSIPUG00000000814	polr2f	100	97.938	Ictalurus_punctatus
ENSAMXG00000012812	polr2f	100	89.764	ENSSTOG00000025722	POLR2F	100	89.764	Ictidomys_tridecemlineatus
ENSAMXG00000012812	polr2f	100	89.764	ENSJJAG00000008097	Polr2f	100	89.764	Jaculus_jaculus
ENSAMXG00000012812	polr2f	100	97.638	ENSKMAG00000014230	polr2f	100	97.638	Kryptolebias_marmoratus
ENSAMXG00000012812	polr2f	94	95.000	ENSLBEG00000008383	polr2f	100	95.000	Labrus_bergylta
ENSAMXG00000012812	polr2f	100	92.126	ENSLACG00000003931	POLR2F	100	92.126	Latimeria_chalumnae
ENSAMXG00000012812	polr2f	100	96.154	ENSLOCG00000011827	polr2f	100	96.154	Lepisosteus_oculatus
ENSAMXG00000012812	polr2f	100	89.764	ENSLAFG00000012632	POLR2F	100	89.764	Loxodonta_africana
ENSAMXG00000012812	polr2f	100	89.764	ENSMFAG00000033687	POLR2F	100	89.764	Macaca_fascicularis
ENSAMXG00000012812	polr2f	83	89.623	ENSMMUG00000038231	POLR2F	87	89.623	Macaca_mulatta
ENSAMXG00000012812	polr2f	100	89.764	ENSMNEG00000044365	POLR2F	100	89.764	Macaca_nemestrina
ENSAMXG00000012812	polr2f	100	89.764	ENSMLEG00000033077	POLR2F	100	89.764	Mandrillus_leucophaeus
ENSAMXG00000012812	polr2f	100	96.850	ENSMAMG00000008056	polr2f	100	96.850	Mastacembelus_armatus
ENSAMXG00000012812	polr2f	100	96.850	ENSMZEG00005005705	polr2f	100	96.850	Maylandia_zebra
ENSAMXG00000012812	polr2f	100	90.551	ENSMGAG00000012504	POLR2F	100	90.551	Meleagris_gallopavo
ENSAMXG00000012812	polr2f	100	89.764	ENSMAUG00000018586	Polr2f	100	89.764	Mesocricetus_auratus
ENSAMXG00000012812	polr2f	100	89.764	ENSMICG00000013128	POLR2F	100	89.764	Microcebus_murinus
ENSAMXG00000012812	polr2f	100	89.764	ENSMOCG00000000237	Polr2f	100	89.764	Microtus_ochrogaster
ENSAMXG00000012812	polr2f	100	98.425	ENSMMOG00000005106	polr2f	100	98.425	Mola_mola
ENSAMXG00000012812	polr2f	100	89.764	ENSMODG00000019063	POLR2F	100	89.764	Monodelphis_domestica
ENSAMXG00000012812	polr2f	100	98.425	ENSMALG00000001444	polr2f	100	98.425	Monopterus_albus
ENSAMXG00000012812	polr2f	100	90.551	MGP_CAROLIEiJ_G0020006	Polr2f	100	90.551	Mus_caroli
ENSAMXG00000012812	polr2f	100	90.551	ENSMUSG00000033020	Polr2f	100	90.551	Mus_musculus
ENSAMXG00000012812	polr2f	100	90.551	MGP_PahariEiJ_G0020008	Polr2f	100	90.551	Mus_pahari
ENSAMXG00000012812	polr2f	100	90.551	MGP_SPRETEiJ_G0020904	Polr2f	100	90.551	Mus_spretus
ENSAMXG00000012812	polr2f	100	88.976	ENSMPUG00000012997	POLR2F	100	88.976	Mustela_putorius_furo
ENSAMXG00000012812	polr2f	98	83.871	ENSMLUG00000029612	-	98	83.871	Myotis_lucifugus
ENSAMXG00000012812	polr2f	100	87.597	ENSMLUG00000014315	-	100	87.597	Myotis_lucifugus
ENSAMXG00000012812	polr2f	100	89.764	ENSNGAG00000020682	Polr2f	100	89.764	Nannospalax_galili
ENSAMXG00000012812	polr2f	100	97.638	ENSNBRG00000002492	polr2f	100	97.638	Neolamprologus_brichardi
ENSAMXG00000012812	polr2f	100	89.764	ENSNLEG00000014987	-	100	89.764	Nomascus_leucogenys
ENSAMXG00000012812	polr2f	100	89.764	ENSODEG00000014123	POLR2F	100	89.764	Octodon_degus
ENSAMXG00000012812	polr2f	100	97.638	ENSONIG00000008394	polr2f	100	97.638	Oreochromis_niloticus
ENSAMXG00000012812	polr2f	100	90.551	ENSOANG00000014684	POLR2F	100	90.551	Ornithorhynchus_anatinus
ENSAMXG00000012812	polr2f	100	89.764	ENSOCUG00000012064	POLR2F	100	89.764	Oryctolagus_cuniculus
ENSAMXG00000012812	polr2f	100	96.063	ENSORLG00000014580	polr2f	100	96.063	Oryzias_latipes
ENSAMXG00000012812	polr2f	100	96.850	ENSORLG00020006910	polr2f	100	96.850	Oryzias_latipes_hni
ENSAMXG00000012812	polr2f	90	95.614	ENSORLG00015015332	polr2f	77	95.614	Oryzias_latipes_hsok
ENSAMXG00000012812	polr2f	80	95.098	ENSOMEG00000006530	polr2f	65	89.091	Oryzias_melastigma
ENSAMXG00000012812	polr2f	100	89.764	ENSOGAG00000025463	POLR2F	100	89.764	Otolemur_garnettii
ENSAMXG00000012812	polr2f	100	89.764	ENSOARG00000014692	POLR2F	100	89.764	Ovis_aries
ENSAMXG00000012812	polr2f	100	89.764	ENSPPAG00000024276	POLR2F	100	89.764	Pan_paniscus
ENSAMXG00000012812	polr2f	100	88.976	ENSPPRG00000013030	POLR2F	100	88.976	Panthera_pardus
ENSAMXG00000012812	polr2f	82	88.462	ENSPTIG00000000632	POLR2F	85	88.462	Panthera_tigris_altaica
ENSAMXG00000012812	polr2f	100	89.764	ENSPTRG00000014356	POLR2F	100	89.764	Pan_troglodytes
ENSAMXG00000012812	polr2f	100	89.764	ENSPANG00000023979	POLR2F	100	89.764	Papio_anubis
ENSAMXG00000012812	polr2f	100	100.000	ENSPKIG00000002464	polr2f	100	100.000	Paramormyrops_kingsleyae
ENSAMXG00000012812	polr2f	56	94.366	ENSPSIG00000013913	POLR2F	100	94.366	Pelodiscus_sinensis
ENSAMXG00000012812	polr2f	100	98.425	ENSPMGG00000009619	polr2f	100	98.425	Periophthalmus_magnuspinnatus
ENSAMXG00000012812	polr2f	100	89.764	ENSPEMG00000008322	Polr2f	100	89.764	Peromyscus_maniculatus_bairdii
ENSAMXG00000012812	polr2f	100	89.764	ENSPCIG00000012000	-	100	89.764	Phascolarctos_cinereus
ENSAMXG00000012812	polr2f	100	96.850	ENSPFOG00000000139	polr2f	100	96.850	Poecilia_formosa
ENSAMXG00000012812	polr2f	100	96.850	ENSPLAG00000000988	polr2f	100	96.850	Poecilia_latipinna
ENSAMXG00000012812	polr2f	100	96.850	ENSPMEG00000019063	polr2f	100	96.850	Poecilia_mexicana
ENSAMXG00000012812	polr2f	77	97.959	ENSPREG00000016749	polr2f	100	97.959	Poecilia_reticulata
ENSAMXG00000012812	polr2f	100	89.764	ENSPPYG00000011809	POLR2F	100	89.764	Pongo_abelii
ENSAMXG00000012812	polr2f	100	89.764	ENSPCOG00000025716	POLR2F	100	89.764	Propithecus_coquereli
ENSAMXG00000012812	polr2f	79	88.000	ENSPVAG00000010107	POLR2F	64	88.000	Pteropus_vampyrus
ENSAMXG00000012812	polr2f	100	96.850	ENSPNYG00000019790	polr2f	100	96.850	Pundamilia_nyererei
ENSAMXG00000012812	polr2f	100	99.213	ENSPNAG00000009017	polr2f	100	99.213	Pygocentrus_nattereri
ENSAMXG00000012812	polr2f	100	90.551	ENSRNOG00000011214	Polr2f	100	90.551	Rattus_norvegicus
ENSAMXG00000012812	polr2f	100	89.764	ENSRBIG00000044878	POLR2F	100	89.764	Rhinopithecus_bieti
ENSAMXG00000012812	polr2f	100	89.764	ENSRROG00000019586	POLR2F	100	89.764	Rhinopithecus_roxellana
ENSAMXG00000012812	polr2f	100	89.764	ENSSBOG00000023340	POLR2F	100	89.764	Saimiri_boliviensis_boliviensis
ENSAMXG00000012812	polr2f	100	89.764	ENSSHAG00000008502	POLR2F	100	89.764	Sarcophilus_harrisii
ENSAMXG00000012812	polr2f	100	97.638	ENSSFOG00015012810	polr2f	100	97.638	Scleropages_formosus
ENSAMXG00000012812	polr2f	100	97.638	ENSSMAG00000005354	polr2f	100	97.638	Scophthalmus_maximus
ENSAMXG00000012812	polr2f	100	98.425	ENSSDUG00000016273	polr2f	100	98.425	Seriola_dumerili
ENSAMXG00000012812	polr2f	100	98.425	ENSSLDG00000024895	polr2f	100	98.425	Seriola_lalandi_dorsalis
ENSAMXG00000012812	polr2f	100	90.551	ENSSPUG00000011343	POLR2F	100	90.551	Sphenodon_punctatus
ENSAMXG00000012812	polr2f	100	96.850	ENSSPAG00000019646	polr2f	100	96.850	Stegastes_partitus
ENSAMXG00000012812	polr2f	100	90.551	ENSSSCG00000000116	POLR2F	100	90.551	Sus_scrofa
ENSAMXG00000012812	polr2f	80	90.099	ENSTGUG00000010476	POLR2F	93	89.764	Taeniopygia_guttata
ENSAMXG00000012812	polr2f	57	90.278	ENSTGUG00000016504	-	88	89.610	Taeniopygia_guttata
ENSAMXG00000012812	polr2f	100	99.213	ENSTRUG00000021130	polr2f	71	99.213	Takifugu_rubripes
ENSAMXG00000012812	polr2f	100	98.425	ENSTNIG00000010827	polr2f	100	98.425	Tetraodon_nigroviridis
ENSAMXG00000012812	polr2f	79	88.000	ENSTTRG00000004817	POLR2F	64	88.000	Tursiops_truncatus
ENSAMXG00000012812	polr2f	100	88.976	ENSUAMG00000020504	POLR2F	100	88.976	Ursus_americanus
ENSAMXG00000012812	polr2f	100	88.976	ENSUMAG00000015052	POLR2F	100	88.976	Ursus_maritimus
ENSAMXG00000012812	polr2f	83	88.679	ENSVVUG00000024021	POLR2F	80	88.679	Vulpes_vulpes
ENSAMXG00000012812	polr2f	100	91.339	ENSXETG00000006346	polr2f	100	91.339	Xenopus_tropicalis
ENSAMXG00000012812	polr2f	100	96.850	ENSXCOG00000015983	polr2f	100	96.850	Xiphophorus_couchianus
ENSAMXG00000012812	polr2f	100	96.850	ENSXMAG00000001559	polr2f	100	96.850	Xiphophorus_maculatus