EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012848 (Gene tree)
Gene ID: 103024264
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 11906 bases
Position: chr18:8555142-8567047
Accession: 103024264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000013211	PRP4	PF08799.11	1.4e-13	1	1
ENSAMXP00000035295	PRP4	PF08799.11	1.7e-13	1	1
ENSAMXP00000041341	PRP4	PF08799.11	1.7e-13	1	1
ENSAMXP00000013211	Prp18	PF02840.15	8e-62	1	1
ENSAMXP00000041341	Prp18	PF02840.15	3.3e-57	1	1
ENSAMXP00000035295	Prp18	PF02840.15	3.6e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000013211	-	2895	XM_007233833	ENSAMXP00000013211	350 (aa)	XP_007233895	W5L049
ENSAMXT00000049469	-	2967	XM_007233834	ENSAMXP00000041341	374 (aa)	XP_007233896	-
ENSAMXT00000053983	-	2994	-	ENSAMXP00000035295	383 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000012848's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012848	prpf18	100	84.286	ENSG00000165630	PRPF18	100	84.286	Homo_sapiens
ENSAMXG00000012848	prpf18	100	90.286	ENSAPOG00000024177	prpf18	100	90.286	Acanthochromis_polyacanthus
ENSAMXG00000012848	prpf18	100	83.714	ENSAMEG00000013591	-	100	83.714	Ailuropoda_melanoleuca
ENSAMXG00000012848	prpf18	100	88.286	ENSACIG00000001186	prpf18	100	88.286	Amphilophus_citrinellus
ENSAMXG00000012848	prpf18	98	90.087	ENSAOCG00000006572	prpf18	94	90.058	Amphiprion_ocellaris
ENSAMXG00000012848	prpf18	100	90.286	ENSAPEG00000004564	prpf18	100	90.286	Amphiprion_percula
ENSAMXG00000012848	prpf18	100	87.714	ENSATEG00000000303	prpf18	100	87.714	Anabas_testudineus
ENSAMXG00000012848	prpf18	99	82.759	ENSAPLG00000003387	-	99	82.759	Anas_platyrhynchos
ENSAMXG00000012848	prpf18	100	84.000	ENSACAG00000000818	-	100	84.000	Anolis_carolinensis
ENSAMXG00000012848	prpf18	100	84.330	ENSANAG00000037445	-	100	84.330	Aotus_nancymaae
ENSAMXG00000012848	prpf18	100	87.714	ENSACLG00000026296	prpf18	100	87.714	Astatotilapia_calliptera
ENSAMXG00000012848	prpf18	100	83.714	ENSBTAG00000017244	PRPF18	100	83.714	Bos_taurus
ENSAMXG00000012848	prpf18	98	39.655	WBGene00009320	F32B6.3	97	39.655	Caenorhabditis_elegans
ENSAMXG00000012848	prpf18	100	84.330	ENSCJAG00000009432	-	100	84.330	Callithrix_jacchus
ENSAMXG00000012848	prpf18	100	83.714	ENSCAFG00000004735	-	100	83.714	Canis_familiaris
ENSAMXG00000012848	prpf18	100	83.714	ENSCAFG00020007712	-	100	83.714	Canis_lupus_dingo
ENSAMXG00000012848	prpf18	100	83.714	ENSCHIG00000000499	-	100	83.714	Capra_hircus
ENSAMXG00000012848	prpf18	100	83.476	ENSTSYG00000003517	-	100	83.476	Carlito_syrichta
ENSAMXG00000012848	prpf18	100	84.330	ENSCPOG00000021069	-	100	84.330	Cavia_porcellus
ENSAMXG00000012848	prpf18	100	84.330	ENSCCAG00000036822	-	100	84.330	Cebus_capucinus
ENSAMXG00000012848	prpf18	100	74.000	ENSCATG00000016633	-	100	74.000	Cercocebus_atys
ENSAMXG00000012848	prpf18	100	84.046	ENSCLAG00000011770	-	100	84.046	Chinchilla_lanigera
ENSAMXG00000012848	prpf18	100	84.330	ENSCSAG00000013109	-	100	84.330	Chlorocebus_sabaeus
ENSAMXG00000012848	prpf18	100	81.096	ENSCPBG00000003100	-	100	81.644	Chrysemys_picta_bellii
ENSAMXG00000012848	prpf18	99	55.908	ENSCING00000020481	-	97	55.908	Ciona_intestinalis
ENSAMXG00000012848	prpf18	99	55.620	ENSCSAVG00000010546	-	99	55.172	Ciona_savignyi
ENSAMXG00000012848	prpf18	100	84.615	ENSCANG00000034900	-	100	84.615	Colobus_angolensis_palliatus
ENSAMXG00000012848	prpf18	100	84.286	ENSCGRG00001023665	Prpf18	100	84.286	Cricetulus_griseus_chok1gshd
ENSAMXG00000012848	prpf18	100	84.286	ENSCGRG00000014690	Prpf18	100	84.286	Cricetulus_griseus_crigri
ENSAMXG00000012848	prpf18	100	87.429	ENSCSEG00000005536	prpf18	99	87.429	Cynoglossus_semilaevis
ENSAMXG00000012848	prpf18	100	89.714	ENSCVAG00000012401	prpf18	100	89.714	Cyprinodon_variegatus
ENSAMXG00000012848	prpf18	100	92.308	ENSDARG00000058306	prpf18	100	92.308	Danio_rerio
ENSAMXG00000012848	prpf18	100	84.286	ENSDNOG00000035607	-	100	84.286	Dasypus_novemcinctus
ENSAMXG00000012848	prpf18	100	83.429	ENSDORG00000000858	Prpf18	100	83.429	Dipodomys_ordii
ENSAMXG00000012848	prpf18	99	52.450	FBgn0027784	Prp18	98	52.450	Drosophila_melanogaster
ENSAMXG00000012848	prpf18	100	75.143	ENSETEG00000015060	-	100	75.143	Echinops_telfairi
ENSAMXG00000012848	prpf18	100	70.286	ENSEBUG00000016502	prpf18	99	69.429	Eptatretus_burgeri
ENSAMXG00000012848	prpf18	100	84.046	ENSEASG00005019373	-	100	84.046	Equus_asinus_asinus
ENSAMXG00000012848	prpf18	100	84.046	ENSECAG00000006997	PRPF18	100	84.046	Equus_caballus
ENSAMXG00000012848	prpf18	68	100.000	ENSEEUG00000001171	-	100	52.532	Erinaceus_europaeus
ENSAMXG00000012848	prpf18	100	88.636	ENSELUG00000022190	prpf18	100	88.636	Esox_lucius
ENSAMXG00000012848	prpf18	100	83.761	ENSFCAG00000004436	-	100	83.761	Felis_catus
ENSAMXG00000012848	prpf18	93	82.462	ENSFALG00000001912	-	98	82.012	Ficedula_albicollis
ENSAMXG00000012848	prpf18	93	86.239	ENSFDAG00000014026	-	99	86.239	Fukomys_damarensis
ENSAMXG00000012848	prpf18	99	57.020	ENSFDAG00000010713	-	97	57.020	Fukomys_damarensis
ENSAMXG00000012848	prpf18	78	92.308	ENSFHEG00000020125	prpf18	98	92.135	Fundulus_heteroclitus
ENSAMXG00000012848	prpf18	99	84.241	ENSGMOG00000012210	prpf18	99	84.241	Gadus_morhua
ENSAMXG00000012848	prpf18	100	83.761	ENSGALG00000043593	-	100	84.046	Gallus_gallus
ENSAMXG00000012848	prpf18	100	87.429	ENSGAFG00000006034	prpf18	100	87.429	Gambusia_affinis
ENSAMXG00000012848	prpf18	100	85.143	ENSGACG00000012232	prpf18	100	85.143	Gasterosteus_aculeatus
ENSAMXG00000012848	prpf18	100	84.286	ENSGAGG00000016878	-	100	84.615	Gopherus_agassizii
ENSAMXG00000012848	prpf18	93	83.077	ENSGGOG00000025188	-	98	84.112	Gorilla_gorilla
ENSAMXG00000012848	prpf18	100	88.857	ENSHBUG00000010264	prpf18	100	88.857	Haplochromis_burtoni
ENSAMXG00000012848	prpf18	100	83.714	ENSHGLG00000018534	PRPF18	100	83.714	Heterocephalus_glaber_female
ENSAMXG00000012848	prpf18	93	85.933	ENSHGLG00100012161	-	98	85.933	Heterocephalus_glaber_male
ENSAMXG00000012848	prpf18	100	89.143	ENSHCOG00000015987	prpf18	100	89.143	Hippocampus_comes
ENSAMXG00000012848	prpf18	100	87.569	ENSIPUG00000007432	prpf18	100	88.669	Ictalurus_punctatus
ENSAMXG00000012848	prpf18	100	83.476	ENSSTOG00000008735	-	100	83.476	Ictidomys_tridecemlineatus
ENSAMXG00000012848	prpf18	100	84.286	ENSJJAG00000024041	-	100	84.286	Jaculus_jaculus
ENSAMXG00000012848	prpf18	100	62.678	ENSJJAG00000015191	-	100	62.678	Jaculus_jaculus
ENSAMXG00000012848	prpf18	100	88.857	ENSKMAG00000012124	prpf18	100	88.857	Kryptolebias_marmoratus
ENSAMXG00000012848	prpf18	100	82.286	ENSLBEG00000028466	prpf18	99	83.478	Labrus_bergylta
ENSAMXG00000012848	prpf18	100	84.286	ENSLACG00000009885	prpf18	100	84.900	Latimeria_chalumnae
ENSAMXG00000012848	prpf18	100	89.174	ENSLOCG00000016736	prpf18	100	89.174	Lepisosteus_oculatus
ENSAMXG00000012848	prpf18	100	84.286	ENSLAFG00000007753	-	100	84.286	Loxodonta_africana
ENSAMXG00000012848	prpf18	100	84.330	ENSMFAG00000000540	-	100	84.330	Macaca_fascicularis
ENSAMXG00000012848	prpf18	100	84.330	ENSMMUG00000015071	PRPF18	93	93.377	Macaca_mulatta
ENSAMXG00000012848	prpf18	100	84.330	ENSMNEG00000024679	-	100	84.330	Macaca_nemestrina
ENSAMXG00000012848	prpf18	79	92.857	ENSMLEG00000031715	-	100	92.857	Mandrillus_leucophaeus
ENSAMXG00000012848	prpf18	100	89.143	ENSMAMG00000006610	prpf18	100	89.143	Mastacembelus_armatus
ENSAMXG00000012848	prpf18	100	88.857	ENSMZEG00005019392	prpf18	100	88.857	Maylandia_zebra
ENSAMXG00000012848	prpf18	100	83.714	ENSMGAG00000005023	-	100	83.714	Meleagris_gallopavo
ENSAMXG00000012848	prpf18	100	84.615	ENSMICG00000006572	-	100	84.615	Microcebus_murinus
ENSAMXG00000012848	prpf18	100	84.286	ENSMOCG00000021468	Prpf18	100	84.286	Microtus_ochrogaster
ENSAMXG00000012848	prpf18	100	88.571	ENSMMOG00000013012	prpf18	100	88.571	Mola_mola
ENSAMXG00000012848	prpf18	51	70.681	ENSMODG00000024051	-	100	85.443	Monodelphis_domestica
ENSAMXG00000012848	prpf18	96	81.361	ENSMODG00000016902	-	91	83.436	Monodelphis_domestica
ENSAMXG00000012848	prpf18	100	76.571	ENSMODG00000024043	-	100	76.571	Monodelphis_domestica
ENSAMXG00000012848	prpf18	100	78.492	ENSMALG00000005486	prpf18	100	80.168	Monopterus_albus
ENSAMXG00000012848	prpf18	100	84.286	MGP_CAROLIEiJ_G0023143	Prpf18	100	95.890	Mus_caroli
ENSAMXG00000012848	prpf18	100	84.571	ENSMUSG00000039449	Prpf18	100	95.890	Mus_musculus
ENSAMXG00000012848	prpf18	100	84.571	MGP_PahariEiJ_G0019203	Prpf18	100	95.890	Mus_pahari
ENSAMXG00000012848	prpf18	100	84.286	MGP_SPRETEiJ_G0024061	Prpf18	100	95.890	Mus_spretus
ENSAMXG00000012848	prpf18	100	83.429	ENSMPUG00000000938	-	100	83.429	Mustela_putorius_furo
ENSAMXG00000012848	prpf18	100	84.000	ENSMLUG00000009200	-	100	84.000	Myotis_lucifugus
ENSAMXG00000012848	prpf18	66	82.759	ENSNGAG00000023550	-	83	82.759	Nannospalax_galili
ENSAMXG00000012848	prpf18	100	84.286	ENSNGAG00000012500	-	100	84.286	Nannospalax_galili
ENSAMXG00000012848	prpf18	100	87.714	ENSNBRG00000001778	prpf18	100	87.714	Neolamprologus_brichardi
ENSAMXG00000012848	prpf18	100	84.330	ENSNLEG00000012186	-	100	84.330	Nomascus_leucogenys
ENSAMXG00000012848	prpf18	74	74.131	ENSMEUG00000005032	-	75	74.131	Notamacropus_eugenii
ENSAMXG00000012848	prpf18	78	64.469	ENSOPRG00000002153	-	100	66.038	Ochotona_princeps
ENSAMXG00000012848	prpf18	100	83.429	ENSODEG00000003770	-	100	83.429	Octodon_degus
ENSAMXG00000012848	prpf18	98	87.172	ENSONIG00000014854	prpf18	96	87.172	Oreochromis_niloticus
ENSAMXG00000012848	prpf18	100	84.615	ENSOANG00000015404	-	100	84.615	Ornithorhynchus_anatinus
ENSAMXG00000012848	prpf18	100	84.000	ENSOCUG00000027756	-	96	84.776	Oryctolagus_cuniculus
ENSAMXG00000012848	prpf18	100	88.571	ENSORLG00000010293	prpf18	100	88.571	Oryzias_latipes
ENSAMXG00000012848	prpf18	100	88.571	ENSORLG00020001530	prpf18	100	88.571	Oryzias_latipes_hni
ENSAMXG00000012848	prpf18	100	88.286	ENSORLG00015013705	prpf18	100	88.286	Oryzias_latipes_hsok
ENSAMXG00000012848	prpf18	100	88.571	ENSOMEG00000009167	prpf18	100	88.571	Oryzias_melastigma
ENSAMXG00000012848	prpf18	100	83.429	ENSOGAG00000007294	-	100	83.429	Otolemur_garnettii
ENSAMXG00000012848	prpf18	100	83.476	ENSOARG00000006243	-	100	83.476	Ovis_aries
ENSAMXG00000012848	prpf18	100	84.330	ENSPPAG00000041959	-	100	84.330	Pan_paniscus
ENSAMXG00000012848	prpf18	100	83.714	ENSPPRG00000000107	-	100	83.714	Panthera_pardus
ENSAMXG00000012848	prpf18	100	83.714	ENSPTIG00000021094	-	100	83.714	Panthera_tigris_altaica
ENSAMXG00000012848	prpf18	100	84.330	ENSPTRG00000002306	PRPF18	100	84.330	Pan_troglodytes
ENSAMXG00000012848	prpf18	100	84.046	ENSPANG00000023346	-	100	84.046	Papio_anubis
ENSAMXG00000012848	prpf18	100	88.319	ENSPKIG00000014128	prpf18	96	88.319	Paramormyrops_kingsleyae
ENSAMXG00000012848	prpf18	100	84.286	ENSPSIG00000016064	-	100	84.286	Pelodiscus_sinensis
ENSAMXG00000012848	prpf18	100	80.912	ENSPMGG00000016486	prpf18	100	80.912	Periophthalmus_magnuspinnatus
ENSAMXG00000012848	prpf18	100	84.000	ENSPEMG00000013704	Prpf18	100	84.000	Peromyscus_maniculatus_bairdii
ENSAMXG00000012848	prpf18	100	74.571	ENSPMAG00000000204	prpf18	100	74.571	Petromyzon_marinus
ENSAMXG00000012848	prpf18	93	83.692	ENSPCIG00000012963	-	99	85.535	Phascolarctos_cinereus
ENSAMXG00000012848	prpf18	100	88.857	ENSPFOG00000017611	prpf18	100	88.857	Poecilia_formosa
ENSAMXG00000012848	prpf18	100	87.714	ENSPLAG00000000369	prpf18	100	87.714	Poecilia_latipinna
ENSAMXG00000012848	prpf18	100	89.143	ENSPMEG00000005183	prpf18	100	89.143	Poecilia_mexicana
ENSAMXG00000012848	prpf18	100	88.000	ENSPREG00000015232	prpf18	100	88.000	Poecilia_reticulata
ENSAMXG00000012848	prpf18	100	84.000	ENSPPYG00000002101	PRPF18	100	84.000	Pongo_abelii
ENSAMXG00000012848	prpf18	100	67.143	ENSPCAG00000010833	-	100	67.143	Procavia_capensis
ENSAMXG00000012848	prpf18	100	79.143	ENSPCOG00000013057	-	100	79.143	Propithecus_coquereli
ENSAMXG00000012848	prpf18	83	100.000	ENSPVAG00000002947	-	91	100.000	Pteropus_vampyrus
ENSAMXG00000012848	prpf18	100	88.857	ENSPNYG00000003554	prpf18	100	88.857	Pundamilia_nyererei
ENSAMXG00000012848	prpf18	100	94.302	ENSPNAG00000023151	prpf18	100	94.302	Pygocentrus_nattereri
ENSAMXG00000012848	prpf18	100	84.000	ENSRNOG00000018396	Prpf18	100	84.000	Rattus_norvegicus
ENSAMXG00000012848	prpf18	100	84.900	ENSRBIG00000028028	-	100	84.900	Rhinopithecus_bieti
ENSAMXG00000012848	prpf18	100	84.615	ENSRROG00000040695	-	100	84.615	Rhinopithecus_roxellana
ENSAMXG00000012848	prpf18	100	84.330	ENSSBOG00000034482	-	100	84.330	Saimiri_boliviensis_boliviensis
ENSAMXG00000012848	prpf18	100	84.571	ENSSHAG00000016463	-	100	84.571	Sarcophilus_harrisii
ENSAMXG00000012848	prpf18	100	70.000	ENSSHAG00000009669	-	100	70.000	Sarcophilus_harrisii
ENSAMXG00000012848	prpf18	98	87.246	ENSSFOG00015022118	prpf18	100	79.437	Scleropages_formosus
ENSAMXG00000012848	prpf18	67	50.215	ENSSFOG00015021154	-	89	50.215	Scleropages_formosus
ENSAMXG00000012848	prpf18	100	86.857	ENSSMAG00000005308	prpf18	100	86.857	Scophthalmus_maximus
ENSAMXG00000012848	prpf18	100	90.571	ENSSDUG00000015428	prpf18	100	90.571	Seriola_dumerili
ENSAMXG00000012848	prpf18	100	90.571	ENSSLDG00000023989	prpf18	100	90.571	Seriola_lalandi_dorsalis
ENSAMXG00000012848	prpf18	78	100.000	ENSSARG00000005307	-	85	100.000	Sorex_araneus
ENSAMXG00000012848	prpf18	100	84.286	ENSSPUG00000002619	-	100	84.286	Sphenodon_punctatus
ENSAMXG00000012848	prpf18	100	89.714	ENSSPAG00000019502	prpf18	100	89.714	Stegastes_partitus
ENSAMXG00000012848	prpf18	100	83.761	ENSSSCG00000026354	-	100	92.857	Sus_scrofa
ENSAMXG00000012848	prpf18	100	83.714	ENSTGUG00000002286	-	100	83.714	Taeniopygia_guttata
ENSAMXG00000012848	prpf18	100	85.429	ENSTRUG00000011278	prpf18	100	85.429	Takifugu_rubripes
ENSAMXG00000012848	prpf18	100	85.714	ENSTNIG00000000911	prpf18	100	85.714	Tetraodon_nigroviridis
ENSAMXG00000012848	prpf18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSAMXG00000012848	prpf18	100	84.286	ENSTTRG00000011117	PRPF18	100	84.286	Tursiops_truncatus
ENSAMXG00000012848	prpf18	91	86.207	ENSUAMG00000001815	-	93	86.207	Ursus_americanus
ENSAMXG00000012848	prpf18	100	79.429	ENSUMAG00000012329	-	100	79.429	Ursus_maritimus
ENSAMXG00000012848	prpf18	100	78.286	ENSVPAG00000011486	-	100	78.286	Vicugna_pacos
ENSAMXG00000012848	prpf18	100	83.761	ENSVVUG00000005453	-	100	83.761	Vulpes_vulpes
ENSAMXG00000012848	prpf18	100	75.637	ENSXETG00000024057	prpf18	100	75.637	Xenopus_tropicalis
ENSAMXG00000012848	prpf18	100	87.500	ENSXCOG00000020414	prpf18	100	87.500	Xiphophorus_couchianus
ENSAMXG00000012848	prpf18	100	89.143	ENSXMAG00000004713	prpf18	91	89.143	Xiphophorus_maculatus