EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000012861 (Gene tree)
Gene ID: 103033833
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 77441 bases
Position: chrAPWO02000142.1:263462-340902
Accession: 103033833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047521	R3H	PF01424.22	3.2e-12	1	1
ENSAMXP00000040849	R3H	PF01424.22	3.6e-12	1	1
ENSAMXP00000049888	R3H	PF01424.22	3.7e-12	1	1
ENSAMXP00000013222	R3H	PF01424.22	3.9e-12	1	1
ENSAMXP00000034882	R3H	PF01424.22	3.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000036135	R3HDM1-202	8753	XM_022667914	ENSAMXP00000049888	1092 (aa)	XP_022523635	UPI000440E074
ENSAMXT00000033228	R3HDM1-203	8634	XM_022667912	ENSAMXP00000034882	1126 (aa)	XP_022523633	UPI000440B82E
ENSAMXT00000052963	R3HDM1-204	8624	XM_022667915	ENSAMXP00000040849	1049 (aa)	XP_022523636	-
ENSAMXT00000013222	R3HDM1-201	8855	XM_007250596	ENSAMXP00000013222	1126 (aa)	XP_007250658	W5L060
ENSAMXT00000047521	R3HDM1-205	8492	XM_022667918	ENSAMXP00000047521	1005 (aa)	XP_022523639	UPI000769CB0C

Gene Model

Click here to download ENSAMXG00000012861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012861's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000012861	R3HDM1	82	58.074	ENSAMXG00000017180	r3hdm2	93	58.960
ENSAMXG00000012861	R3HDM1	63	39.890	ENSAMXG00000020587	arpp21	88	49.691
ENSAMXG00000012861	R3HDM1	91	80.000	ENSAMXG00000003536	r3hdm1	100	67.689

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012861	R3HDM1	100	61.004	ENSG00000048991	R3HDM1	90	80.208	Homo_sapiens
ENSAMXG00000012861	R3HDM1	89	63.923	ENSAPOG00000020850	r3hdm1	89	64.649	Acanthochromis_polyacanthus
ENSAMXG00000012861	R3HDM1	100	61.121	ENSAMEG00000014886	R3HDM1	93	72.902	Ailuropoda_melanoleuca
ENSAMXG00000012861	R3HDM1	89	63.680	ENSAOCG00000005192	r3hdm1	92	64.649	Amphiprion_ocellaris
ENSAMXG00000012861	R3HDM1	89	59.080	ENSAPEG00000016108	r3hdm1	100	53.134	Amphiprion_percula
ENSAMXG00000012861	R3HDM1	89	59.806	ENSATEG00000000232	r3hdm1	100	53.521	Anabas_testudineus
ENSAMXG00000012861	R3HDM1	100	62.345	ENSAPLG00000015231	R3HDM1	92	71.703	Anas_platyrhynchos
ENSAMXG00000012861	R3HDM1	100	72.115	ENSACAG00000001676	R3HDM1	93	72.182	Anolis_carolinensis
ENSAMXG00000012861	R3HDM1	100	60.965	ENSANAG00000035334	R3HDM1	89	78.882	Aotus_nancymaae
ENSAMXG00000012861	R3HDM1	89	53.575	ENSACLG00000027282	r3hdm1	100	53.575	Astatotilapia_calliptera
ENSAMXG00000012861	R3HDM1	100	72.596	ENSBTAG00000013302	R3HDM1	93	72.662	Bos_taurus
ENSAMXG00000012861	R3HDM1	100	60.896	ENSCJAG00000011718	R3HDM1	89	76.418	Callithrix_jacchus
ENSAMXG00000012861	R3HDM1	100	72.837	ENSCAFG00000005075	R3HDM1	93	72.902	Canis_familiaris
ENSAMXG00000012861	R3HDM1	100	72.837	ENSCAFG00020016119	R3HDM1	93	72.902	Canis_lupus_dingo
ENSAMXG00000012861	R3HDM1	100	73.077	ENSCHIG00000020851	R3HDM1	93	73.141	Capra_hircus
ENSAMXG00000012861	R3HDM1	100	69.231	ENSCPOG00000012784	R3HDM1	99	65.359	Cavia_porcellus
ENSAMXG00000012861	R3HDM1	100	60.492	ENSCCAG00000027199	R3HDM1	89	78.261	Cebus_capucinus
ENSAMXG00000012861	R3HDM1	100	71.394	ENSCATG00000023642	R3HDM1	89	77.950	Cercocebus_atys
ENSAMXG00000012861	R3HDM1	100	70.913	ENSCLAG00000007962	R3HDM1	99	67.647	Chinchilla_lanigera
ENSAMXG00000012861	R3HDM1	100	71.635	ENSCSAG00000016356	R3HDM1	93	71.942	Chlorocebus_sabaeus
ENSAMXG00000012861	R3HDM1	77	81.818	ENSCHOG00000013638	R3HDM1	81	68.841	Choloepus_hoffmanni
ENSAMXG00000012861	R3HDM1	86	81.618	ENSCPBG00000009645	R3HDM1	100	81.618	Chrysemys_picta_bellii
ENSAMXG00000012861	R3HDM1	100	71.875	ENSCANG00000034748	R3HDM1	100	66.425	Colobus_angolensis_palliatus
ENSAMXG00000012861	R3HDM1	99	70.913	ENSCGRG00001012357	R3hdm1	90	70.983	Cricetulus_griseus_chok1gshd
ENSAMXG00000012861	R3HDM1	100	70.913	ENSCGRG00000012080	R3hdm1	99	68.627	Cricetulus_griseus_crigri
ENSAMXG00000012861	R3HDM1	78	70.820	ENSCSEG00000008944	r3hdm1	91	60.238	Cynoglossus_semilaevis
ENSAMXG00000012861	R3HDM1	89	61.743	ENSCVAG00000007582	r3hdm1	91	62.470	Cyprinodon_variegatus
ENSAMXG00000012861	R3HDM1	64	36.792	ENSDARG00000061081	arpp21	85	44.444	Danio_rerio
ENSAMXG00000012861	R3HDM1	100	59.067	ENSDNOG00000000771	R3HDM1	100	58.834	Dasypus_novemcinctus
ENSAMXG00000012861	R3HDM1	95	70.024	ENSETEG00000013606	R3HDM1	89	71.053	Echinops_telfairi
ENSAMXG00000012861	R3HDM1	62	40.656	ENSEBUG00000014746	arpp21	98	41.602	Eptatretus_burgeri
ENSAMXG00000012861	R3HDM1	100	72.596	ENSEASG00005007392	R3HDM1	100	72.596	Equus_asinus_asinus
ENSAMXG00000012861	R3HDM1	100	72.596	ENSECAG00000019114	R3HDM1	100	72.596	Equus_caballus
ENSAMXG00000012861	R3HDM1	89	63.068	ENSEEUG00000012589	R3HDM1	80	63.068	Erinaceus_europaeus
ENSAMXG00000012861	R3HDM1	93	75.516	ENSELUG00000004909	R3HDM1	99	67.631	Esox_lucius
ENSAMXG00000012861	R3HDM1	92	73.860	ENSELUG00000014413	r3hdm1	92	70.000	Esox_lucius
ENSAMXG00000012861	R3HDM1	100	72.837	ENSFCAG00000027113	R3HDM1	100	72.837	Felis_catus
ENSAMXG00000012861	R3HDM1	76	65.046	ENSFALG00000013731	R3HDM1	86	70.983	Ficedula_albicollis
ENSAMXG00000012861	R3HDM1	100	71.635	ENSFDAG00000016478	R3HDM1	99	68.954	Fukomys_damarensis
ENSAMXG00000012861	R3HDM1	89	62.954	ENSFHEG00000018713	r3hdm1	94	63.680	Fundulus_heteroclitus
ENSAMXG00000012861	R3HDM1	63	73.333	ENSGMOG00000006042	-	82	72.264	Gadus_morhua
ENSAMXG00000012861	R3HDM1	100	54.762	ENSGALG00000012246	R3HDM1	99	73.871	Gallus_gallus
ENSAMXG00000012861	R3HDM1	90	51.295	ENSGAFG00000006203	r3hdm1	85	73.267	Gambusia_affinis
ENSAMXG00000012861	R3HDM1	86	69.653	ENSGACG00000014925	r3hdm1	91	70.520	Gasterosteus_aculeatus
ENSAMXG00000012861	R3HDM1	100	62.113	ENSGAGG00000007840	R3HDM1	96	69.927	Gopherus_agassizii
ENSAMXG00000012861	R3HDM1	100	60.827	ENSGGOG00000008156	R3HDM1	89	78.571	Gorilla_gorilla
ENSAMXG00000012861	R3HDM1	100	71.394	ENSHGLG00000015718	R3HDM1	99	68.301	Heterocephalus_glaber_female
ENSAMXG00000012861	R3HDM1	100	49.208	ENSHGLG00100015374	-	100	50.237	Heterocephalus_glaber_male
ENSAMXG00000012861	R3HDM1	100	71.394	ENSHGLG00100003184	-	99	68.301	Heterocephalus_glaber_male
ENSAMXG00000012861	R3HDM1	79	68.254	ENSHCOG00000013366	r3hdm1	86	69.206	Hippocampus_comes
ENSAMXG00000012861	R3HDM1	89	83.333	ENSIPUG00000001676	R3HDM1	100	85.645	Ictalurus_punctatus
ENSAMXG00000012861	R3HDM1	60	38.082	ENSIPUG00000020552	arpp21	87	42.433	Ictalurus_punctatus
ENSAMXG00000012861	R3HDM1	89	75.316	ENSIPUG00000013629	r3hdm1	94	75.238	Ictalurus_punctatus
ENSAMXG00000012861	R3HDM1	100	72.356	ENSSTOG00000007572	R3HDM1	99	69.608	Ictidomys_tridecemlineatus
ENSAMXG00000012861	R3HDM1	94	77.654	ENSLACG00000005334	R3HDM1	100	73.861	Latimeria_chalumnae
ENSAMXG00000012861	R3HDM1	100	79.277	ENSLOCG00000001641	r3hdm1	93	79.567	Lepisosteus_oculatus
ENSAMXG00000012861	R3HDM1	100	72.356	ENSLAFG00000009065	R3HDM1	98	77.337	Loxodonta_africana
ENSAMXG00000012861	R3HDM1	100	60.843	ENSMFAG00000030331	R3HDM1	100	72.115	Macaca_fascicularis
ENSAMXG00000012861	R3HDM1	100	60.667	ENSMMUG00000009844	R3HDM1	89	78.571	Macaca_mulatta
ENSAMXG00000012861	R3HDM1	100	60.667	ENSMNEG00000027793	R3HDM1	100	72.115	Macaca_nemestrina
ENSAMXG00000012861	R3HDM1	100	60.843	ENSMLEG00000043189	R3HDM1	89	78.571	Mandrillus_leucophaeus
ENSAMXG00000012861	R3HDM1	89	62.954	ENSMAMG00000004532	r3hdm1	86	71.429	Mastacembelus_armatus
ENSAMXG00000012861	R3HDM1	89	63.680	ENSMZEG00005003157	r3hdm1	92	64.407	Maylandia_zebra
ENSAMXG00000012861	R3HDM1	100	61.689	ENSMGAG00000012461	R3HDM1	100	61.511	Meleagris_gallopavo
ENSAMXG00000012861	R3HDM1	100	71.154	ENSMAUG00000010315	R3hdm1	99	68.627	Mesocricetus_auratus
ENSAMXG00000012861	R3HDM1	100	59.615	ENSMICG00000005900	-	88	79.747	Microcebus_murinus
ENSAMXG00000012861	R3HDM1	93	59.566	ENSMICG00000042655	-	96	73.315	Microcebus_murinus
ENSAMXG00000012861	R3HDM1	58	56.061	ENSMOCG00000019833	-	99	68.301	Microtus_ochrogaster
ENSAMXG00000012861	R3HDM1	91	62.165	ENSMODG00000000923	R3HDM1	90	69.248	Monodelphis_domestica
ENSAMXG00000012861	R3HDM1	99	63.285	ENSMALG00000009000	r3hdm1	92	64.010	Monopterus_albus
ENSAMXG00000012861	R3HDM1	100	71.154	MGP_CAROLIEiJ_G0014543	R3hdm1	100	70.850	Mus_caroli
ENSAMXG00000012861	R3HDM1	100	71.154	ENSMUSG00000056211	R3hdm1	100	70.850	Mus_musculus
ENSAMXG00000012861	R3HDM1	100	71.154	MGP_PahariEiJ_G0027779	R3hdm1	100	70.850	Mus_pahari
ENSAMXG00000012861	R3HDM1	100	71.154	MGP_SPRETEiJ_G0015350	R3hdm1	100	70.850	Mus_spretus
ENSAMXG00000012861	R3HDM1	100	61.140	ENSMPUG00000002412	R3HDM1	93	72.902	Mustela_putorius_furo
ENSAMXG00000012861	R3HDM1	100	60.717	ENSMLUG00000013824	R3HDM1	93	72.182	Myotis_lucifugus
ENSAMXG00000012861	R3HDM1	100	61.018	ENSNLEG00000008622	R3HDM1	89	78.571	Nomascus_leucogenys
ENSAMXG00000012861	R3HDM1	89	56.115	ENSMEUG00000011784	R3HDM1	93	62.055	Notamacropus_eugenii
ENSAMXG00000012861	R3HDM1	100	71.635	ENSODEG00000008607	R3HDM1	99	68.627	Octodon_degus
ENSAMXG00000012861	R3HDM1	93	67.493	ENSONIG00000012017	r3hdm1	90	68.320	Oreochromis_niloticus
ENSAMXG00000012861	R3HDM1	100	71.635	ENSOANG00000007987	R3HDM1	92	71.703	Ornithorhynchus_anatinus
ENSAMXG00000012861	R3HDM1	89	71.154	ENSOCUG00000017366	R3HDM1	90	71.223	Oryctolagus_cuniculus
ENSAMXG00000012861	R3HDM1	89	58.354	ENSORLG00000004297	r3hdm1	86	72.697	Oryzias_latipes
ENSAMXG00000012861	R3HDM1	89	62.712	ENSORLG00015017355	r3hdm1	85	73.026	Oryzias_latipes_hsok
ENSAMXG00000012861	R3HDM1	100	72.222	ENSOGAG00000003136	R3HDM1	93	72.289	Otolemur_garnettii
ENSAMXG00000012861	R3HDM1	100	62.026	ENSOARG00000010788	R3HDM1	93	73.141	Ovis_aries
ENSAMXG00000012861	R3HDM1	100	60.896	ENSPPAG00000027858	R3HDM1	89	78.571	Pan_paniscus
ENSAMXG00000012861	R3HDM1	100	60.984	ENSPPRG00000002626	R3HDM1	88	79.430	Panthera_pardus
ENSAMXG00000012861	R3HDM1	100	60.984	ENSPTIG00000016581	R3HDM1	88	79.747	Panthera_tigris_altaica
ENSAMXG00000012861	R3HDM1	100	60.808	ENSPTRG00000012494	R3HDM1	89	78.571	Pan_troglodytes
ENSAMXG00000012861	R3HDM1	100	60.843	ENSPANG00000026448	R3HDM1	89	78.571	Papio_anubis
ENSAMXG00000012861	R3HDM1	99	66.960	ENSPKIG00000004328	r3hdm1	96	70.426	Paramormyrops_kingsleyae
ENSAMXG00000012861	R3HDM1	100	70.673	ENSPSIG00000012915	R3HDM1	92	70.743	Pelodiscus_sinensis
ENSAMXG00000012861	R3HDM1	100	70.673	ENSPEMG00000015187	R3hdm1	99	68.301	Peromyscus_maniculatus_bairdii
ENSAMXG00000012861	R3HDM1	87	58.791	ENSPMAG00000003369	-	92	58.904	Petromyzon_marinus
ENSAMXG00000012861	R3HDM1	100	71.599	ENSPCIG00000002491	R3HDM1	100	71.531	Phascolarctos_cinereus
ENSAMXG00000012861	R3HDM1	89	61.353	ENSPFOG00000015036	r3hdm1	91	62.077	Poecilia_formosa
ENSAMXG00000012861	R3HDM1	89	52.520	ENSPLAG00000018042	r3hdm1	100	52.535	Poecilia_latipinna
ENSAMXG00000012861	R3HDM1	89	52.876	ENSPMEG00000023947	r3hdm1	100	52.792	Poecilia_mexicana
ENSAMXG00000012861	R3HDM1	89	61.928	ENSPREG00000007902	r3hdm1	85	73.267	Poecilia_reticulata
ENSAMXG00000012861	R3HDM1	100	59.649	ENSPPYG00000012815	R3HDM1	93	70.096	Pongo_abelii
ENSAMXG00000012861	R3HDM1	94	69.322	ENSPCAG00000006208	R3HDM1	88	69.118	Procavia_capensis
ENSAMXG00000012861	R3HDM1	87	80.496	ENSPCOG00000012698	R3HDM1	86	83.824	Propithecus_coquereli
ENSAMXG00000012861	R3HDM1	100	66.346	ENSPVAG00000006098	R3HDM1	93	66.427	Pteropus_vampyrus
ENSAMXG00000012861	R3HDM1	52	56.800	ENSPNAG00000004162	arpp21	88	49.691	Pygocentrus_nattereri
ENSAMXG00000012861	R3HDM1	91	79.430	ENSPNAG00000013952	r3hdm1	100	69.031	Pygocentrus_nattereri
ENSAMXG00000012861	R3HDM1	90	90.166	ENSPNAG00000005436	R3HDM1	99	91.447	Pygocentrus_nattereri
ENSAMXG00000012861	R3HDM1	100	70.913	ENSRNOG00000004099	R3hdm1	93	70.983	Rattus_norvegicus
ENSAMXG00000012861	R3HDM1	100	59.772	ENSRBIG00000033317	R3HDM1	100	84.559	Rhinopithecus_bieti
ENSAMXG00000012861	R3HDM1	100	60.512	ENSRROG00000034534	R3HDM1	89	78.882	Rhinopithecus_roxellana
ENSAMXG00000012861	R3HDM1	100	60.404	ENSSBOG00000020389	R3HDM1	89	78.571	Saimiri_boliviensis_boliviensis
ENSAMXG00000012861	R3HDM1	100	61.996	ENSSHAG00000016999	R3HDM1	93	70.862	Sarcophilus_harrisii
ENSAMXG00000012861	R3HDM1	100	74.515	ENSSFOG00015019851	-	100	67.028	Scleropages_formosus
ENSAMXG00000012861	R3HDM1	100	78.780	ENSSFOG00015014134	r3hdm1	100	78.780	Scleropages_formosus
ENSAMXG00000012861	R3HDM1	88	73.597	ENSSMAG00000001669	r3hdm1	86	74.587	Scophthalmus_maximus
ENSAMXG00000012861	R3HDM1	89	64.010	ENSSDUG00000010749	r3hdm1	91	64.734	Seriola_dumerili
ENSAMXG00000012861	R3HDM1	99	64.407	ENSSLDG00000004499	r3hdm1	91	65.133	Seriola_lalandi_dorsalis
ENSAMXG00000012861	R3HDM1	69	61.039	ENSSARG00000000352	-	64	61.039	Sorex_araneus
ENSAMXG00000012861	R3HDM1	100	62.279	ENSSPUG00000004167	R3HDM1	92	71.770	Sphenodon_punctatus
ENSAMXG00000012861	R3HDM1	89	64.649	ENSSPAG00000004648	r3hdm1	91	65.375	Stegastes_partitus
ENSAMXG00000012861	R3HDM1	100	72.356	ENSSSCG00000015692	R3HDM1	89	77.950	Sus_scrofa
ENSAMXG00000012861	R3HDM1	100	66.447	ENSTGUG00000011750	R3HDM1	92	70.264	Taeniopygia_guttata
ENSAMXG00000012861	R3HDM1	78	72.368	ENSTRUG00000011654	r3hdm1	84	73.355	Takifugu_rubripes
ENSAMXG00000012861	R3HDM1	87	50.918	ENSTNIG00000010362	r3hdm1	90	64.524	Tetraodon_nigroviridis
ENSAMXG00000012861	R3HDM1	100	68.029	ENSTTRG00000003935	R3HDM1	93	68.106	Tursiops_truncatus
ENSAMXG00000012861	R3HDM1	70	65.824	ENSUAMG00000024806	R3HDM1	93	74.124	Ursus_americanus
ENSAMXG00000012861	R3HDM1	100	60.731	ENSUMAG00000005552	R3HDM1	100	74.124	Ursus_maritimus
ENSAMXG00000012861	R3HDM1	86	80.220	ENSVPAG00000007333	R3HDM1	80	80.292	Vicugna_pacos
ENSAMXG00000012861	R3HDM1	100	72.837	ENSVVUG00000006457	R3HDM1	93	72.902	Vulpes_vulpes
ENSAMXG00000012861	R3HDM1	90	60.119	ENSXETG00000019330	r3hdm1	100	60.000	Xenopus_tropicalis
ENSAMXG00000012861	R3HDM1	65	71.895	ENSXCOG00000017448	r3hdm1	82	72.876	Xiphophorus_couchianus
ENSAMXG00000012861	R3HDM1	89	61.259	ENSXMAG00000007885	r3hdm1	91	61.985	Xiphophorus_maculatus