EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000013170 (Gene tree)
Gene ID: 103032033
Gene Symbol: cnot1
Alias: cdc39-like|im:7141761|kiaa1007l|wu:fc58h04|zgc:152902
Full Name: CCR4-NOT transcription complex subunit 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 21385 bases
Position: chr24:22054698-22076082
Accession: 103032033
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000028783	Not1	PF04054.15	4.7e-153	1	1
ENSAMXP00000013574	Not1	PF04054.15	4.8e-153	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000013574	-	7506	XM_015601677	ENSAMXP00000013574	2368 (aa)	XP_015457163	W5L162
ENSAMXT00000042573	-	7383	-	ENSAMXP00000028783	2327 (aa)	-	-
ENSAMXT00000054723	-	4572	-	ENSAMXP00000043079	1523 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000013170's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013170	cnot1	100	91.614	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSAMXG00000013170	cnot1	100	92.214	ENSAPOG00000005042	cnot1	100	91.961	Acanthochromis_polyacanthus
ENSAMXG00000013170	cnot1	100	91.656	ENSAMEG00000017298	CNOT1	100	91.105	Ailuropoda_melanoleuca
ENSAMXG00000013170	cnot1	90	93.972	ENSACIG00000016003	cnot1	100	93.925	Amphilophus_citrinellus
ENSAMXG00000013170	cnot1	100	93.855	ENSAPEG00000022342	cnot1	100	93.603	Amphiprion_percula
ENSAMXG00000013170	cnot1	100	92.806	ENSATEG00000012892	cnot1	100	92.596	Anabas_testudineus
ENSAMXG00000013170	cnot1	100	90.638	ENSAPLG00000007162	CNOT1	100	90.466	Anas_platyrhynchos
ENSAMXG00000013170	cnot1	91	89.440	ENSACAG00000001602	CNOT1	98	89.610	Anolis_carolinensis
ENSAMXG00000013170	cnot1	100	88.321	ENSANAG00000038198	CNOT1	100	88.107	Aotus_nancymaae
ENSAMXG00000013170	cnot1	100	94.530	ENSACLG00000014234	cnot1	100	94.231	Astatotilapia_calliptera
ENSAMXG00000013170	cnot1	100	91.505	ENSBTAG00000020782	CNOT1	100	96.982	Bos_taurus
ENSAMXG00000013170	cnot1	78	41.528	WBGene00002845	let-711	92	54.008	Caenorhabditis_elegans
ENSAMXG00000013170	cnot1	100	91.379	ENSCJAG00000011318	CNOT1	100	92.364	Callithrix_jacchus
ENSAMXG00000013170	cnot1	100	90.810	ENSCAFG00000008426	CNOT1	100	90.596	Canis_familiaris
ENSAMXG00000013170	cnot1	100	90.155	ENSCAFG00020010156	CNOT1	100	93.042	Canis_lupus_dingo
ENSAMXG00000013170	cnot1	100	91.505	ENSCHIG00000010452	CNOT1	100	90.955	Capra_hircus
ENSAMXG00000013170	cnot1	100	91.505	ENSTSYG00000006888	CNOT1	100	90.955	Carlito_syrichta
ENSAMXG00000013170	cnot1	100	87.679	ENSCPOG00000013026	CNOT1	100	87.048	Cavia_porcellus
ENSAMXG00000013170	cnot1	100	89.865	ENSCCAG00000026333	CNOT1	100	89.314	Cebus_capucinus
ENSAMXG00000013170	cnot1	100	91.463	ENSCATG00000032625	CNOT1	100	90.913	Cercocebus_atys
ENSAMXG00000013170	cnot1	100	91.505	ENSCLAG00000006289	CNOT1	100	90.997	Chinchilla_lanigera
ENSAMXG00000013170	cnot1	100	91.463	ENSCSAG00000004731	CNOT1	100	90.913	Chlorocebus_sabaeus
ENSAMXG00000013170	cnot1	81	97.727	ENSCHOG00000009712	CNOT1	83	97.173	Choloepus_hoffmanni
ENSAMXG00000013170	cnot1	93	95.644	ENSCPBG00000026222	CNOT1	98	95.644	Chrysemys_picta_bellii
ENSAMXG00000013170	cnot1	100	58.787	ENSCING00000009149	-	100	58.462	Ciona_intestinalis
ENSAMXG00000013170	cnot1	89	62.623	ENSCSAVG00000002414	-	99	62.128	Ciona_savignyi
ENSAMXG00000013170	cnot1	100	89.311	ENSCANG00000040534	CNOT1	100	89.098	Colobus_angolensis_palliatus
ENSAMXG00000013170	cnot1	100	90.734	ENSCGRG00001016365	Cnot1	100	90.787	Cricetulus_griseus_chok1gshd
ENSAMXG00000013170	cnot1	100	90.734	ENSCGRG00000001714	Cnot1	100	90.787	Cricetulus_griseus_crigri
ENSAMXG00000013170	cnot1	100	90.294	ENSCVAG00000018930	cnot1	100	90.378	Cyprinodon_variegatus
ENSAMXG00000013170	cnot1	100	95.416	ENSDARG00000004174	cnot1	100	95.164	Danio_rerio
ENSAMXG00000013170	cnot1	100	88.861	ENSDNOG00000013250	CNOT1	100	88.688	Dasypus_novemcinctus
ENSAMXG00000013170	cnot1	99	45.966	FBgn0085436	Not1	99	47.611	Drosophila_melanogaster
ENSAMXG00000013170	cnot1	82	97.500	ENSETEG00000012806	CNOT1	84	94.277	Echinops_telfairi
ENSAMXG00000013170	cnot1	81	75.595	ENSEBUG00000011534	cnot1	95	75.595	Eptatretus_burgeri
ENSAMXG00000013170	cnot1	95	95.825	ENSEASG00005005819	CNOT1	100	96.982	Equus_asinus_asinus
ENSAMXG00000013170	cnot1	100	91.463	ENSECAG00000009889	CNOT1	100	90.913	Equus_caballus
ENSAMXG00000013170	cnot1	89	89.742	ENSEEUG00000006015	CNOT1	90	89.342	Erinaceus_europaeus
ENSAMXG00000013170	cnot1	100	94.647	ENSELUG00000014085	cnot1	100	94.647	Esox_lucius
ENSAMXG00000013170	cnot1	100	90.901	ENSFCAG00000025155	CNOT1	100	90.688	Felis_catus
ENSAMXG00000013170	cnot1	100	91.085	ENSFALG00000007285	CNOT1	100	90.576	Ficedula_albicollis
ENSAMXG00000013170	cnot1	100	91.463	ENSFDAG00000013399	CNOT1	100	90.955	Fukomys_damarensis
ENSAMXG00000013170	cnot1	100	93.653	ENSFHEG00000020574	cnot1	100	93.443	Fundulus_heteroclitus
ENSAMXG00000013170	cnot1	90	94.246	ENSGMOG00000012864	cnot1	100	94.107	Gadus_morhua
ENSAMXG00000013170	cnot1	100	90.959	ENSGALG00000002301	CNOT1	100	90.450	Gallus_gallus
ENSAMXG00000013170	cnot1	100	92.632	ENSGAFG00000015005	cnot1	100	92.421	Gambusia_affinis
ENSAMXG00000013170	cnot1	91	93.970	ENSGACG00000002606	cnot1	100	97.576	Gasterosteus_aculeatus
ENSAMXG00000013170	cnot1	100	91.505	ENSGAGG00000022646	CNOT1	100	92.308	Gopherus_agassizii
ENSAMXG00000013170	cnot1	100	91.505	ENSGGOG00000009547	CNOT1	100	90.955	Gorilla_gorilla
ENSAMXG00000013170	cnot1	100	94.615	ENSHBUG00000001729	cnot1	100	94.316	Haplochromis_burtoni
ENSAMXG00000013170	cnot1	100	91.379	ENSHGLG00000014322	CNOT1	100	90.871	Heterocephalus_glaber_female
ENSAMXG00000013170	cnot1	100	93.459	ENSHCOG00000006501	cnot1	100	93.249	Hippocampus_comes
ENSAMXG00000013170	cnot1	100	95.326	ENSIPUG00000011915	cnot1	100	95.326	Ictalurus_punctatus
ENSAMXG00000013170	cnot1	100	91.334	ENSSTOG00000005490	CNOT1	100	90.955	Ictidomys_tridecemlineatus
ENSAMXG00000013170	cnot1	100	90.917	ENSJJAG00000000633	Cnot1	100	90.408	Jaculus_jaculus
ENSAMXG00000013170	cnot1	100	93.829	ENSKMAG00000006149	cnot1	100	93.535	Kryptolebias_marmoratus
ENSAMXG00000013170	cnot1	95	98.603	ENSLBEG00000004740	cnot1	100	98.603	Labrus_bergylta
ENSAMXG00000013170	cnot1	100	91.884	ENSLACG00000010869	CNOT1	100	91.460	Latimeria_chalumnae
ENSAMXG00000013170	cnot1	100	94.746	ENSLOCG00000006324	cnot1	100	94.491	Lepisosteus_oculatus
ENSAMXG00000013170	cnot1	100	91.008	ENSLAFG00000000098	CNOT1	100	90.794	Loxodonta_africana
ENSAMXG00000013170	cnot1	100	91.614	ENSMFAG00000035888	CNOT1	100	91.062	Macaca_fascicularis
ENSAMXG00000013170	cnot1	100	91.421	ENSMMUG00000014625	CNOT1	94	98.545	Macaca_mulatta
ENSAMXG00000013170	cnot1	100	88.721	ENSMNEG00000031820	CNOT1	100	90.616	Macaca_nemestrina
ENSAMXG00000013170	cnot1	100	89.769	ENSMLEG00000040933	CNOT1	100	89.555	Mandrillus_leucophaeus
ENSAMXG00000013170	cnot1	100	92.551	ENSMAMG00000016524	cnot1	100	92.340	Mastacembelus_armatus
ENSAMXG00000013170	cnot1	100	90.122	ENSMZEG00005016210	cnot1	100	89.828	Maylandia_zebra
ENSAMXG00000013170	cnot1	100	91.193	ENSMGAG00000001908	CNOT1	100	90.683	Meleagris_gallopavo
ENSAMXG00000013170	cnot1	100	91.288	ENSMICG00000007071	CNOT1	100	91.116	Microcebus_murinus
ENSAMXG00000013170	cnot1	100	91.253	ENSMOCG00000017969	Cnot1	100	90.745	Microtus_ochrogaster
ENSAMXG00000013170	cnot1	100	91.162	ENSMMOG00000019134	cnot1	100	90.825	Mola_mola
ENSAMXG00000013170	cnot1	100	91.131	ENSMODG00000014199	CNOT1	100	90.959	Monodelphis_domestica
ENSAMXG00000013170	cnot1	100	93.684	ENSMALG00000008645	cnot1	100	93.642	Monopterus_albus
ENSAMXG00000013170	cnot1	95	97.143	MGP_CAROLIEiJ_G0031430	Cnot1	92	97.143	Mus_caroli
ENSAMXG00000013170	cnot1	100	91.319	ENSMUSG00000036550	Cnot1	100	90.809	Mus_musculus
ENSAMXG00000013170	cnot1	100	91.295	MGP_PahariEiJ_G0023028	Cnot1	100	90.787	Mus_pahari
ENSAMXG00000013170	cnot1	100	91.253	MGP_SPRETEiJ_G0032549	Cnot1	100	90.745	Mus_spretus
ENSAMXG00000013170	cnot1	100	91.505	ENSMPUG00000004830	CNOT1	100	90.955	Mustela_putorius_furo
ENSAMXG00000013170	cnot1	100	91.337	ENSMLUG00000003728	CNOT1	100	90.745	Myotis_lucifugus
ENSAMXG00000013170	cnot1	100	91.337	ENSNGAG00000018628	Cnot1	100	90.829	Nannospalax_galili
ENSAMXG00000013170	cnot1	97	87.591	ENSNBRG00000019358	cnot1	100	87.591	Neolamprologus_brichardi
ENSAMXG00000013170	cnot1	100	91.544	ENSNLEG00000003566	CNOT1	100	91.288	Nomascus_leucogenys
ENSAMXG00000013170	cnot1	86	93.056	ENSMEUG00000006145	CNOT1	87	93.056	Notamacropus_eugenii
ENSAMXG00000013170	cnot1	85	98.058	ENSOPRG00000005604	CNOT1	84	98.058	Ochotona_princeps
ENSAMXG00000013170	cnot1	100	91.421	ENSODEG00000016337	CNOT1	100	90.913	Octodon_degus
ENSAMXG00000013170	cnot1	100	94.624	ENSONIG00000007358	cnot1	100	94.372	Oreochromis_niloticus
ENSAMXG00000013170	cnot1	90	90.596	ENSOANG00000012109	CNOT1	100	90.461	Ornithorhynchus_anatinus
ENSAMXG00000013170	cnot1	100	91.505	ENSOCUG00000006911	CNOT1	100	90.913	Oryctolagus_cuniculus
ENSAMXG00000013170	cnot1	100	93.776	ENSORLG00000013734	cnot1	100	93.608	Oryzias_latipes
ENSAMXG00000013170	cnot1	100	92.039	ENSORLG00020017012	cnot1	100	91.870	Oryzias_latipes_hni
ENSAMXG00000013170	cnot1	100	91.955	ENSORLG00015007091	cnot1	100	91.786	Oryzias_latipes_hsok
ENSAMXG00000013170	cnot1	100	91.544	ENSOMEG00000015124	cnot1	100	91.544	Oryzias_melastigma
ENSAMXG00000013170	cnot1	100	91.548	ENSOGAG00000000543	CNOT1	100	91.081	Otolemur_garnettii
ENSAMXG00000013170	cnot1	100	91.505	ENSOARG00000001567	CNOT1	100	90.955	Ovis_aries
ENSAMXG00000013170	cnot1	100	91.463	ENSPPAG00000022013	CNOT1	100	90.913	Pan_paniscus
ENSAMXG00000013170	cnot1	100	91.505	ENSPPRG00000004867	CNOT1	100	90.955	Panthera_pardus
ENSAMXG00000013170	cnot1	100	91.505	ENSPTIG00000012589	CNOT1	100	90.955	Panthera_tigris_altaica
ENSAMXG00000013170	cnot1	100	90.860	ENSPTRG00000008183	CNOT1	100	90.646	Pan_troglodytes
ENSAMXG00000013170	cnot1	100	88.023	ENSPANG00000020901	CNOT1	100	87.809	Papio_anubis
ENSAMXG00000013170	cnot1	100	94.741	ENSPKIG00000023538	CNOT1	100	94.402	Paramormyrops_kingsleyae
ENSAMXG00000013170	cnot1	99	88.063	ENSPKIG00000002914	CNOT1	99	87.542	Paramormyrops_kingsleyae
ENSAMXG00000013170	cnot1	100	91.253	ENSPSIG00000005499	CNOT1	100	90.745	Pelodiscus_sinensis
ENSAMXG00000013170	cnot1	100	79.891	ENSPMAG00000009381	cnot1	100	79.226	Petromyzon_marinus
ENSAMXG00000013170	cnot1	95	96.407	ENSPCIG00000007343	CNOT1	100	97.183	Phascolarctos_cinereus
ENSAMXG00000013170	cnot1	99	93.263	ENSPFOG00000003497	cnot1	100	92.966	Poecilia_formosa
ENSAMXG00000013170	cnot1	95	98.004	ENSPLAG00000014018	cnot1	100	98.004	Poecilia_latipinna
ENSAMXG00000013170	cnot1	95	98.004	ENSPMEG00000005868	cnot1	100	98.004	Poecilia_mexicana
ENSAMXG00000013170	cnot1	95	98.004	ENSPREG00000018793	cnot1	100	98.004	Poecilia_reticulata
ENSAMXG00000013170	cnot1	100	91.505	ENSPPYG00000007410	CNOT1	100	90.955	Pongo_abelii
ENSAMXG00000013170	cnot1	87	90.426	ENSPCAG00000003241	CNOT1	88	90.426	Procavia_capensis
ENSAMXG00000013170	cnot1	100	90.642	ENSPCOG00000027139	CNOT1	100	90.806	Propithecus_coquereli
ENSAMXG00000013170	cnot1	100	88.478	ENSPVAG00000004243	CNOT1	100	88.515	Pteropus_vampyrus
ENSAMXG00000013170	cnot1	100	92.039	ENSPNYG00000012919	cnot1	100	91.744	Pundamilia_nyererei
ENSAMXG00000013170	cnot1	100	97.297	ENSPNAG00000000246	cnot1	100	97.297	Pygocentrus_nattereri
ENSAMXG00000013170	cnot1	100	91.253	ENSRNOG00000012271	Cnot1	100	90.745	Rattus_norvegicus
ENSAMXG00000013170	cnot1	100	88.931	ENSRBIG00000044598	CNOT1	100	88.716	Rhinopithecus_bieti
ENSAMXG00000013170	cnot1	100	91.463	ENSRROG00000000906	CNOT1	100	90.913	Rhinopithecus_roxellana
ENSAMXG00000013170	cnot1	100	86.867	ENSSBOG00000029155	CNOT1	100	86.653	Saimiri_boliviensis_boliviensis
ENSAMXG00000013170	cnot1	100	91.429	ENSSHAG00000012187	CNOT1	100	90.879	Sarcophilus_harrisii
ENSAMXG00000013170	cnot1	100	93.109	ENSSFOG00015017614	cnot1	100	92.812	Scleropages_formosus
ENSAMXG00000013170	cnot1	100	93.651	ENSSMAG00000013844	cnot1	100	93.939	Scophthalmus_maximus
ENSAMXG00000013170	cnot1	100	92.427	ENSSDUG00000021491	cnot1	100	92.385	Seriola_dumerili
ENSAMXG00000013170	cnot1	100	94.898	ENSSLDG00000014816	cnot1	100	94.772	Seriola_lalandi_dorsalis
ENSAMXG00000013170	cnot1	84	97.400	ENSSARG00000000762	CNOT1	88	97.400	Sorex_araneus
ENSAMXG00000013170	cnot1	100	93.647	ENSSPAG00000018802	cnot1	100	93.353	Stegastes_partitus
ENSAMXG00000013170	cnot1	100	91.379	ENSSSCG00000002799	CNOT1	100	96.208	Sus_scrofa
ENSAMXG00000013170	cnot1	100	91.096	ENSTGUG00000005919	CNOT1	100	90.588	Taeniopygia_guttata
ENSAMXG00000013170	cnot1	100	92.391	ENSTNIG00000018706	cnot1	100	92.131	Tetraodon_nigroviridis
ENSAMXG00000013170	cnot1	80	96.479	ENSTBEG00000000720	CNOT1	80	96.479	Tupaia_belangeri
ENSAMXG00000013170	cnot1	97	90.570	ENSTTRG00000008460	CNOT1	95	89.808	Tursiops_truncatus
ENSAMXG00000013170	cnot1	100	91.505	ENSUAMG00000009251	CNOT1	100	90.955	Ursus_americanus
ENSAMXG00000013170	cnot1	100	91.505	ENSUMAG00000021291	CNOT1	100	90.955	Ursus_maritimus
ENSAMXG00000013170	cnot1	97	91.766	ENSVPAG00000008846	CNOT1	97	91.766	Vicugna_pacos
ENSAMXG00000013170	cnot1	100	90.155	ENSVVUG00000024037	CNOT1	100	93.042	Vulpes_vulpes
ENSAMXG00000013170	cnot1	100	86.081	ENSXETG00000015900	cnot1	100	85.654	Xenopus_tropicalis
ENSAMXG00000013170	cnot1	100	92.632	ENSXCOG00000013552	cnot1	100	92.421	Xiphophorus_couchianus
ENSAMXG00000013170	cnot1	100	92.674	ENSXMAG00000006031	cnot1	100	92.463	Xiphophorus_maculatus