EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000013435 (Gene tree)
Gene ID: 103024908
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 15853 bases
Position: chr17:5933310-5949162
Accession: 103024908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000013933	GTP_EFTU	PF00009.27	4e-63	1	1
ENSAMXP00000040585	GTP_EFTU	PF00009.27	4.3e-63	1	1
ENSAMXP00000013933	GTP_EFTU_D2	PF03144.25	1.9e-17	1	1
ENSAMXP00000040585	GTP_EFTU_D2	PF03144.25	2.1e-17	1	1
ENSAMXP00000013933	EFG_IV	PF03764.18	1.6e-36	1	1
ENSAMXP00000040585	EFG_IV	PF03764.18	1.8e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000057618	-	2558	XM_022678774	ENSAMXP00000040585	775 (aa)	XP_022534495	UPI000BBDD2B3
ENSAMXT00000013933	-	2238	-	ENSAMXP00000013933	745 (aa)	-	W5L271

Gene Model

Click here to download ENSAMXG00000013435's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013435's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000013435	gfm1	68	38.667	ENSAMXG00000006645	eef2b	65	37.059
ENSAMXG00000013435	gfm1	94	34.631	ENSAMXG00000009979	gfm2	99	33.844

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013435	gfm1	96	80.833	ENSG00000168827	GFM1	100	93.333	Homo_sapiens
ENSAMXG00000013435	gfm1	91	83.700	ENSAPOG00000016489	gfm1	99	82.521	Acanthochromis_polyacanthus
ENSAMXG00000013435	gfm1	98	79.622	ENSAMEG00000013542	GFM1	100	79.073	Ailuropoda_melanoleuca
ENSAMXG00000013435	gfm1	97	81.619	ENSACIG00000014465	gfm1	95	81.619	Amphilophus_citrinellus
ENSAMXG00000013435	gfm1	98	85.363	ENSAOCG00000006023	gfm1	100	84.492	Amphiprion_ocellaris
ENSAMXG00000013435	gfm1	98	85.226	ENSAPEG00000024499	gfm1	99	85.675	Amphiprion_percula
ENSAMXG00000013435	gfm1	98	85.910	ENSATEG00000013789	gfm1	100	85.027	Anabas_testudineus
ENSAMXG00000013435	gfm1	97	80.110	ENSAPLG00000005022	GFM1	99	80.110	Anas_platyrhynchos
ENSAMXG00000013435	gfm1	96	81.137	ENSACAG00000006829	GFM1	98	81.137	Anolis_carolinensis
ENSAMXG00000013435	gfm1	96	81.111	ENSANAG00000035983	GFM1	100	78.562	Aotus_nancymaae
ENSAMXG00000013435	gfm1	97	86.420	ENSACLG00000016586	gfm1	100	84.759	Astatotilapia_calliptera
ENSAMXG00000013435	gfm1	98	79.487	ENSBTAG00000027795	GFM1	100	78.411	Bos_taurus
ENSAMXG00000013435	gfm1	94	57.326	WBGene00009246	gfm-1	99	55.855	Caenorhabditis_elegans
ENSAMXG00000013435	gfm1	96	80.556	ENSCJAG00000000363	GFM1	100	78.752	Callithrix_jacchus
ENSAMXG00000013435	gfm1	96	81.476	ENSCAFG00000009006	GFM1	100	81.213	Canis_familiaris
ENSAMXG00000013435	gfm1	98	79.973	ENSCAFG00020005878	GFM1	98	81.616	Canis_lupus_dingo
ENSAMXG00000013435	gfm1	98	79.622	ENSCHIG00000015220	GFM1	100	78.780	Capra_hircus
ENSAMXG00000013435	gfm1	98	80.081	ENSTSYG00000002013	GFM1	100	78.752	Carlito_syrichta
ENSAMXG00000013435	gfm1	98	70.310	ENSCAPG00000005699	GFM1	99	70.310	Cavia_aperea
ENSAMXG00000013435	gfm1	96	82.058	ENSCPOG00000001194	GFM1	97	80.244	Cavia_porcellus
ENSAMXG00000013435	gfm1	96	80.694	ENSCCAG00000025561	GFM1	100	78.486	Cebus_capucinus
ENSAMXG00000013435	gfm1	96	80.444	ENSCATG00000037622	GFM1	100	78.029	Cercocebus_atys
ENSAMXG00000013435	gfm1	96	81.085	ENSCLAG00000002503	GFM1	95	81.085	Chinchilla_lanigera
ENSAMXG00000013435	gfm1	96	80.860	ENSCSAG00000012162	GFM1	100	78.429	Chlorocebus_sabaeus
ENSAMXG00000013435	gfm1	96	71.944	ENSCHOG00000004867	GFM1	100	70.106	Choloepus_hoffmanni
ENSAMXG00000013435	gfm1	97	81.706	ENSCPBG00000018367	GFM1	99	80.321	Chrysemys_picta_bellii
ENSAMXG00000013435	gfm1	98	56.469	ENSCING00000011960	-	97	56.469	Ciona_intestinalis
ENSAMXG00000013435	gfm1	95	58.889	ENSCSAVG00000008514	-	99	58.941	Ciona_savignyi
ENSAMXG00000013435	gfm1	96	80.305	ENSCANG00000031714	GFM1	100	78.162	Colobus_angolensis_palliatus
ENSAMXG00000013435	gfm1	98	80.432	ENSCGRG00001022095	GFM1	100	79.627	Cricetulus_griseus_chok1gshd
ENSAMXG00000013435	gfm1	98	80.432	ENSCGRG00000012043	GFM1	100	79.627	Cricetulus_griseus_crigri
ENSAMXG00000013435	gfm1	98	78.095	ENSCSEG00000017088	gfm1	99	79.201	Cynoglossus_semilaevis
ENSAMXG00000013435	gfm1	98	87.415	ENSCVAG00000004126	gfm1	100	86.364	Cyprinodon_variegatus
ENSAMXG00000013435	gfm1	97	86.226	ENSDARG00000063624	gfm1	100	85.141	Danio_rerio
ENSAMXG00000013435	gfm1	55	79.951	ENSDNOG00000016385	-	100	79.951	Dasypus_novemcinctus
ENSAMXG00000013435	gfm1	96	79.722	ENSDORG00000014165	Gfm1	100	77.527	Dipodomys_ordii
ENSAMXG00000013435	gfm1	98	67.764	FBgn0263133	mEFG1	99	67.520	Drosophila_melanogaster
ENSAMXG00000013435	gfm1	96	73.370	ENSETEG00000019197	GFM1	95	73.786	Echinops_telfairi
ENSAMXG00000013435	gfm1	90	63.299	ENSEBUG00000012794	gfm1	99	63.299	Eptatretus_burgeri
ENSAMXG00000013435	gfm1	96	60.139	ENSEEUG00000000429	GFM1	99	60.139	Erinaceus_europaeus
ENSAMXG00000013435	gfm1	98	85.363	ENSELUG00000014728	gfm1	100	84.492	Esox_lucius
ENSAMXG00000013435	gfm1	98	79.296	ENSFCAG00000013291	GFM1	100	78.307	Felis_catus
ENSAMXG00000013435	gfm1	90	81.185	ENSFALG00000007619	GFM1	100	81.185	Ficedula_albicollis
ENSAMXG00000013435	gfm1	96	81.919	ENSFDAG00000016559	GFM1	100	78.571	Fukomys_damarensis
ENSAMXG00000013435	gfm1	98	86.867	ENSFHEG00000006091	gfm1	100	85.829	Fundulus_heteroclitus
ENSAMXG00000013435	gfm1	97	86.657	ENSGMOG00000010161	gfm1	100	86.657	Gadus_morhua
ENSAMXG00000013435	gfm1	97	80.609	ENSGALG00000009634	GFM1	98	80.609	Gallus_gallus
ENSAMXG00000013435	gfm1	98	87.825	ENSGAFG00000012527	gfm1	100	86.765	Gambusia_affinis
ENSAMXG00000013435	gfm1	98	85.266	ENSGACG00000009864	gfm1	99	84.358	Gasterosteus_aculeatus
ENSAMXG00000013435	gfm1	96	81.111	ENSGGOG00000003085	GFM1	100	78.562	Gorilla_gorilla
ENSAMXG00000013435	gfm1	97	86.420	ENSHBUG00000002120	gfm1	100	84.759	Haplochromis_burtoni
ENSAMXG00000013435	gfm1	96	80.946	ENSHGLG00000016855	GFM1	99	79.195	Heterocephalus_glaber_female
ENSAMXG00000013435	gfm1	96	80.946	ENSHGLG00100013049	GFM1	99	79.195	Heterocephalus_glaber_male
ENSAMXG00000013435	gfm1	98	85.753	ENSHCOG00000007638	gfm1	100	84.626	Hippocampus_comes
ENSAMXG00000013435	gfm1	98	89.056	ENSIPUG00000005873	gfm1	100	89.037	Ictalurus_punctatus
ENSAMXG00000013435	gfm1	98	78.697	ENSSTOG00000010150	GFM1	100	78.226	Ictidomys_tridecemlineatus
ENSAMXG00000013435	gfm1	97	80.579	ENSJJAG00000016447	Gfm1	100	78.562	Jaculus_jaculus
ENSAMXG00000013435	gfm1	98	82.900	ENSKMAG00000020768	gfm1	100	82.219	Kryptolebias_marmoratus
ENSAMXG00000013435	gfm1	94	87.447	ENSLBEG00000021315	gfm1	100	87.732	Labrus_bergylta
ENSAMXG00000013435	gfm1	97	82.483	ENSLACG00000012295	GFM1	100	81.427	Latimeria_chalumnae
ENSAMXG00000013435	gfm1	97	79.150	ENSLOCG00000003778	gfm1	99	79.287	Lepisosteus_oculatus
ENSAMXG00000013435	gfm1	96	79.722	ENSLAFG00000010945	GFM1	99	78.472	Loxodonta_africana
ENSAMXG00000013435	gfm1	96	80.721	ENSMFAG00000035731	GFM1	100	78.695	Macaca_fascicularis
ENSAMXG00000013435	gfm1	96	80.721	ENSMMUG00000004961	GFM1	100	78.695	Macaca_mulatta
ENSAMXG00000013435	gfm1	96	80.444	ENSMNEG00000033245	GFM1	100	78.029	Macaca_nemestrina
ENSAMXG00000013435	gfm1	96	78.779	ENSMLEG00000030908	GFM1	99	78.514	Mandrillus_leucophaeus
ENSAMXG00000013435	gfm1	98	85.773	ENSMAMG00000011760	gfm1	100	84.626	Mastacembelus_armatus
ENSAMXG00000013435	gfm1	97	86.557	ENSMZEG00005016639	gfm1	100	84.893	Maylandia_zebra
ENSAMXG00000013435	gfm1	97	80.748	ENSMGAG00000010641	GFM1	97	80.748	Meleagris_gallopavo
ENSAMXG00000013435	gfm1	98	81.436	ENSMAUG00000000611	Gfm1	100	80.027	Mesocricetus_auratus
ENSAMXG00000013435	gfm1	96	80.972	ENSMICG00000049086	GFM1	100	79.178	Microcebus_murinus
ENSAMXG00000013435	gfm1	98	80.297	ENSMOCG00000000465	Gfm1	100	79.361	Microtus_ochrogaster
ENSAMXG00000013435	gfm1	97	85.694	ENSMMOG00000012538	gfm1	98	85.694	Mola_mola
ENSAMXG00000013435	gfm1	97	79.530	ENSMODG00000015673	GFM1	97	79.833	Monodelphis_domestica
ENSAMXG00000013435	gfm1	96	85.294	ENSMALG00000012508	gfm1	95	85.294	Monopterus_albus
ENSAMXG00000013435	gfm1	98	80.352	MGP_CAROLIEiJ_G0025052	Gfm1	100	79.361	Mus_caroli
ENSAMXG00000013435	gfm1	98	80.081	ENSMUSG00000027774	Gfm1	100	79.095	Mus_musculus
ENSAMXG00000013435	gfm1	98	79.946	MGP_PahariEiJ_G0026495	Gfm1	100	78.961	Mus_pahari
ENSAMXG00000013435	gfm1	98	80.081	MGP_SPRETEiJ_G0025994	Gfm1	100	79.095	Mus_spretus
ENSAMXG00000013435	gfm1	98	80.244	ENSMPUG00000002859	GFM1	100	79.233	Mustela_putorius_furo
ENSAMXG00000013435	gfm1	98	79.838	ENSMLUG00000000452	GFM1	100	78.571	Myotis_lucifugus
ENSAMXG00000013435	gfm1	98	80.461	ENSNGAG00000012375	Gfm1	100	79.333	Nannospalax_galili
ENSAMXG00000013435	gfm1	97	86.584	ENSNBRG00000004631	gfm1	99	86.584	Neolamprologus_brichardi
ENSAMXG00000013435	gfm1	96	81.111	ENSNLEG00000004176	GFM1	100	78.884	Nomascus_leucogenys
ENSAMXG00000013435	gfm1	91	71.176	ENSMEUG00000007784	GFM1	99	71.176	Notamacropus_eugenii
ENSAMXG00000013435	gfm1	97	79.586	ENSOPRG00000009860	GFM1	100	78.898	Ochotona_princeps
ENSAMXG00000013435	gfm1	96	82.476	ENSODEG00000004316	GFM1	100	79.365	Octodon_degus
ENSAMXG00000013435	gfm1	98	86.594	ENSONIG00000003772	gfm1	100	85.027	Oreochromis_niloticus
ENSAMXG00000013435	gfm1	98	80.650	ENSOCUG00000013561	GFM1	100	79.443	Oryctolagus_cuniculus
ENSAMXG00000013435	gfm1	95	86.299	ENSORLG00000006487	gfm1	100	86.441	Oryzias_latipes
ENSAMXG00000013435	gfm1	97	85.615	ENSORLG00020003362	gfm1	100	83.755	Oryzias_latipes_hni
ENSAMXG00000013435	gfm1	97	85.615	ENSORLG00015005829	gfm1	100	83.622	Oryzias_latipes_hsok
ENSAMXG00000013435	gfm1	97	86.169	ENSOMEG00000012894	gfm1	100	84.154	Oryzias_melastigma
ENSAMXG00000013435	gfm1	98	78.349	ENSOGAG00000008298	GFM1	100	77.454	Otolemur_garnettii
ENSAMXG00000013435	gfm1	96	80.444	ENSOARG00000002409	GFM1	99	80.444	Ovis_aries
ENSAMXG00000013435	gfm1	96	81.111	ENSPPAG00000033881	GFM1	100	78.562	Pan_paniscus
ENSAMXG00000013435	gfm1	98	79.296	ENSPPRG00000009281	GFM1	100	78.307	Panthera_pardus
ENSAMXG00000013435	gfm1	98	79.161	ENSPTIG00000012416	GFM1	100	78.175	Panthera_tigris_altaica
ENSAMXG00000013435	gfm1	96	81.111	ENSPTRG00000015570	GFM1	100	78.562	Pan_troglodytes
ENSAMXG00000013435	gfm1	96	80.583	ENSPANG00000016512	GFM1	100	78.162	Papio_anubis
ENSAMXG00000013435	gfm1	98	83.858	ENSPKIG00000004876	gfm1	100	82.754	Paramormyrops_kingsleyae
ENSAMXG00000013435	gfm1	97	81.293	ENSPSIG00000012567	GFM1	99	79.947	Pelodiscus_sinensis
ENSAMXG00000013435	gfm1	97	83.149	ENSPMGG00000014068	gfm1	100	83.149	Periophthalmus_magnuspinnatus
ENSAMXG00000013435	gfm1	98	80.352	ENSPEMG00000008942	Gfm1	100	79.228	Peromyscus_maniculatus_bairdii
ENSAMXG00000013435	gfm1	85	77.093	ENSPCIG00000020195	GFM1	96	78.444	Phascolarctos_cinereus
ENSAMXG00000013435	gfm1	98	87.825	ENSPFOG00000011022	gfm1	100	86.898	Poecilia_formosa
ENSAMXG00000013435	gfm1	99	86.174	ENSPLAG00000019585	gfm1	100	85.955	Poecilia_latipinna
ENSAMXG00000013435	gfm1	98	87.962	ENSPMEG00000012376	gfm1	100	87.032	Poecilia_mexicana
ENSAMXG00000013435	gfm1	98	87.415	ENSPREG00000001332	gfm1	95	86.248	Poecilia_reticulata
ENSAMXG00000013435	gfm1	96	80.694	ENSPPYG00000014244	GFM1	100	78.162	Pongo_abelii
ENSAMXG00000013435	gfm1	94	79.374	ENSPCAG00000008934	GFM1	100	79.374	Procavia_capensis
ENSAMXG00000013435	gfm1	96	80.972	ENSPCOG00000022259	GFM1	100	78.647	Propithecus_coquereli
ENSAMXG00000013435	gfm1	98	78.484	ENSPVAG00000013605	GFM1	100	77.381	Pteropus_vampyrus
ENSAMXG00000013435	gfm1	97	86.584	ENSPNYG00000006037	gfm1	99	85.890	Pundamilia_nyererei
ENSAMXG00000013435	gfm1	97	92.393	ENSPNAG00000001237	gfm1	100	92.732	Pygocentrus_nattereri
ENSAMXG00000013435	gfm1	98	80.352	ENSRNOG00000012873	Gfm1	100	78.961	Rattus_norvegicus
ENSAMXG00000013435	gfm1	96	80.583	ENSRBIG00000031363	GFM1	100	78.162	Rhinopithecus_bieti
ENSAMXG00000013435	gfm1	96	80.721	ENSRROG00000031081	GFM1	100	78.296	Rhinopithecus_roxellana
ENSAMXG00000013435	gfm1	93	55.777	YLR069C	-	91	55.777	Saccharomyces_cerevisiae
ENSAMXG00000013435	gfm1	96	81.111	ENSSBOG00000023252	GFM1	100	78.562	Saimiri_boliviensis_boliviensis
ENSAMXG00000013435	gfm1	98	79.539	ENSSHAG00000017772	GFM1	98	79.539	Sarcophilus_harrisii
ENSAMXG00000013435	gfm1	97	84.371	ENSSFOG00015003117	gfm1	99	84.509	Scleropages_formosus
ENSAMXG00000013435	gfm1	98	85.205	ENSSMAG00000013221	gfm1	100	83.957	Scophthalmus_maximus
ENSAMXG00000013435	gfm1	98	85.499	ENSSDUG00000018665	gfm1	100	84.626	Seriola_dumerili
ENSAMXG00000013435	gfm1	98	85.363	ENSSLDG00000020606	gfm1	100	84.492	Seriola_lalandi_dorsalis
ENSAMXG00000013435	gfm1	97	79.086	ENSSPUG00000018686	GFM1	98	79.086	Sphenodon_punctatus
ENSAMXG00000013435	gfm1	98	86.320	ENSSPAG00000008800	gfm1	100	85.428	Stegastes_partitus
ENSAMXG00000013435	gfm1	98	78.543	ENSSSCG00000025651	GFM1	98	78.543	Sus_scrofa
ENSAMXG00000013435	gfm1	99	82.950	ENSTRUG00000009244	gfm1	100	82.400	Takifugu_rubripes
ENSAMXG00000013435	gfm1	97	85.201	ENSTNIG00000007729	gfm1	100	83.289	Tetraodon_nigroviridis
ENSAMXG00000013435	gfm1	90	72.593	ENSTBEG00000017404	GFM1	89	72.593	Tupaia_belangeri
ENSAMXG00000013435	gfm1	98	79.268	ENSTTRG00000001735	GFM1	100	77.543	Tursiops_truncatus
ENSAMXG00000013435	gfm1	98	79.838	ENSUAMG00000026381	GFM1	100	78.968	Ursus_americanus
ENSAMXG00000013435	gfm1	98	79.702	ENSUMAG00000011268	GFM1	100	78.968	Ursus_maritimus
ENSAMXG00000013435	gfm1	98	76.287	ENSVPAG00000009444	GFM1	100	75.232	Vicugna_pacos
ENSAMXG00000013435	gfm1	96	81.564	ENSVVUG00000020091	GFM1	100	81.065	Vulpes_vulpes
ENSAMXG00000013435	gfm1	97	81.421	ENSXETG00000032551	GFM1	96	82.524	Xenopus_tropicalis
ENSAMXG00000013435	gfm1	54	84.236	ENSXCOG00000012590	gfm1	92	84.236	Xiphophorus_couchianus
ENSAMXG00000013435	gfm1	98	87.278	ENSXMAG00000000261	gfm1	100	86.230	Xiphophorus_maculatus