EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000013552 (Gene tree)
Gene ID
103022532
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein B-like
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
12633 bases
Position
chr6:40551019-40563651
Accession
103022532
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000013960PABPPF00658.181.8e-2811
ENSAMXP00000048832PABPPF00658.181.8e-2811
ENSAMXP00000013960RRM_5PF13893.65.4e-1012
ENSAMXP00000013960RRM_5PF13893.65.4e-1022
ENSAMXP00000048832RRM_5PF13893.61.3e-0911
ENSAMXP00000048832RRM_1PF00076.222e-8814
ENSAMXP00000048832RRM_1PF00076.222e-8824
ENSAMXP00000048832RRM_1PF00076.222e-8834
ENSAMXP00000048832RRM_1PF00076.222e-8844
ENSAMXP00000013960RRM_1PF00076.223.1e-8814
ENSAMXP00000013960RRM_1PF00076.223.1e-8824
ENSAMXP00000013960RRM_1PF00076.223.1e-8834
ENSAMXP00000013960RRM_1PF00076.223.1e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000044399-5353XM_022670673ENSAMXP00000048832652 (aa)XP_022526394UPI000BBDD7D4
ENSAMXT00000013960-5272XM_015603697ENSAMXP00000013960625 (aa)XP_015459183W5L298
Gene Model
Click here to download ENSAMXG00000013552's gene model file
Pathways
Pathway IDPathway NameSource
amex03013RNA transportKEGG
amex03015mRNA surveillance pathwayKEGG
amex03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013552's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000013552pabpc1l6036.145ENSAMXG00000040498elavl39236.145
ENSAMXG00000013552pabpc1l9964.762ENSAMXG00000018779pabpc49765.079
ENSAMXG00000013552pabpc1l9972.327ENSAMXG00000018395-9872.828
ENSAMXG00000013552pabpc1l5632.727ENSAMXG00000024951-6430.435
ENSAMXG00000013552pabpc1l6136.145ENSAMXG00000036990ELAVL28636.145
ENSAMXG00000013552pabpc1l6034.940ENSAMXG00000000687elavl48534.940
ENSAMXG00000013552pabpc1l9972.170ENSAMXG00000008599pabpc1b9872.170
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000013552pabpc1l9970.240ENSG00000101104PABPC1L9879.012Homo_sapiens
ENSAMXG00000013552pabpc1l9975.962ENSAPOG00000010842pabpc1l9975.962Acanthochromis_polyacanthus
ENSAMXG00000013552pabpc1l9965.805ENSAMEG00000004099PABPC1L10066.974Ailuropoda_melanoleuca
ENSAMXG00000013552pabpc1l9981.368ENSACIG00000021004-10081.368Amphilophus_citrinellus
ENSAMXG00000013552pabpc1l10077.742ENSAOCG00000006167-10077.742Amphiprion_ocellaris
ENSAMXG00000013552pabpc1l10078.341ENSAPEG00000010558-9888.732Amphiprion_percula
ENSAMXG00000013552pabpc1l10079.556ENSATEG00000007428pabpc1l10080.190Anabas_testudineus
ENSAMXG00000013552pabpc1l9873.003ENSAPLG00000008415PABPC1L9972.943Anas_platyrhynchos
ENSAMXG00000013552pabpc1l9976.899ENSACAG00000011841PABPC1L9976.899Anolis_carolinensis
ENSAMXG00000013552pabpc1l9970.128ENSANAG00000026826PABPC1L9970.128Aotus_nancymaae
ENSAMXG00000013552pabpc1l10080.604ENSACLG00000024791pabpc1l10080.604Astatotilapia_calliptera
ENSAMXG00000013552pabpc1l5487.500ENSBTAG00000055300-10087.500Bos_taurus
ENSAMXG00000013552pabpc1l6071.138ENSBTAG00000016849PABPC1L7571.255Bos_taurus
ENSAMXG00000013552pabpc1l5978.736ENSCJAG00000038506-10078.736Callithrix_jacchus
ENSAMXG00000013552pabpc1l9970.607ENSCJAG00000017628PABPC1L9970.607Callithrix_jacchus
ENSAMXG00000013552pabpc1l9965.798ENSCAFG00000009573PABPC1L10065.798Canis_familiaris
ENSAMXG00000013552pabpc1l9971.132ENSCAFG00020013828PABPC1L9971.132Canis_lupus_dingo
ENSAMXG00000013552pabpc1l9870.033ENSCHIG00000025759PABPC1L9170.033Capra_hircus
ENSAMXG00000013552pabpc1l9969.489ENSTSYG00000006645PABPC1L9969.489Carlito_syrichta
ENSAMXG00000013552pabpc1l9864.376ENSCAPG00000014519PABPC1L9964.376Cavia_aperea
ENSAMXG00000013552pabpc1l9966.561ENSCPOG00000013633PABPC1L9966.561Cavia_porcellus
ENSAMXG00000013552pabpc1l9970.288ENSCCAG00000023338PABPC1L9970.288Cebus_capucinus
ENSAMXG00000013552pabpc1l9970.240ENSCATG00000034065PABPC1L9971.246Cercocebus_atys
ENSAMXG00000013552pabpc1l9966.083ENSCLAG00000005298PABPC1L9966.720Chinchilla_lanigera
ENSAMXG00000013552pabpc1l9969.920ENSCSAG00000014242PABPC1L9970.927Chlorocebus_sabaeus
ENSAMXG00000013552pabpc1l7083.032ENSCPBG00000017755-9983.032Chrysemys_picta_bellii
ENSAMXG00000013552pabpc1l5587.395ENSCPBG00000007810-8387.395Chrysemys_picta_bellii
ENSAMXG00000013552pabpc1l9752.663ENSCING00000002796-9752.663Ciona_intestinalis
ENSAMXG00000013552pabpc1l9960.835ENSCSAVG00000004246-8972.857Ciona_savignyi
ENSAMXG00000013552pabpc1l9958.268ENSCSAVG00000003102-10082.550Ciona_savignyi
ENSAMXG00000013552pabpc1l9966.877ENSCANG00000037530PABPC1L9967.402Colobus_angolensis_palliatus
ENSAMXG00000013552pabpc1l9962.893ENSCGRG00001021938Pabpc1l9962.893Cricetulus_griseus_chok1gshd
ENSAMXG00000013552pabpc1l9962.893ENSCGRG00000007946Pabpc1l9962.893Cricetulus_griseus_crigri
ENSAMXG00000013552pabpc1l9971.429ENSCSEG00000021295pabpc1l9971.429Cynoglossus_semilaevis
ENSAMXG00000013552pabpc1l10078.730ENSCVAG00000015943-9995.420Cyprinodon_variegatus
ENSAMXG00000013552pabpc1l9985.920ENSDARG00000002597pabpc1l10085.920Danio_rerio
ENSAMXG00000013552pabpc1l9971.611ENSDNOG00000048450PABPC1L9971.611Dasypus_novemcinctus
ENSAMXG00000013552pabpc1l9967.891ENSDORG00000001067Pabpc1l9967.891Dipodomys_ordii
ENSAMXG00000013552pabpc1l9378.862ENSETEG00000009969PABPC1L6978.862Echinops_telfairi
ENSAMXG00000013552pabpc1l5377.640ENSEASG00005023407-6577.640Equus_asinus_asinus
ENSAMXG00000013552pabpc1l5586.310ENSEASG00005023408-10086.310Equus_asinus_asinus
ENSAMXG00000013552pabpc1l6672.889ENSECAG00000040139-8172.889Equus_caballus
ENSAMXG00000013552pabpc1l9966.984ENSEEUG00000005978PABPC1L9966.984Erinaceus_europaeus
ENSAMXG00000013552pabpc1l10082.567ENSELUG00000001811pabpc1l9786.139Esox_lucius
ENSAMXG00000013552pabpc1l9971.565ENSFCAG00000011692PABPC1L9971.565Felis_catus
ENSAMXG00000013552pabpc1l8477.111ENSFALG00000005372PABPC1L9374.910Ficedula_albicollis
ENSAMXG00000013552pabpc1l9965.760ENSFDAG00000008291PABPC1L9965.974Fukomys_damarensis
ENSAMXG00000013552pabpc1l10081.210ENSFHEG00000003398pabpc1l10081.210Fundulus_heteroclitus
ENSAMXG00000013552pabpc1l9977.316ENSGMOG00000004437pabpc1l9977.316Gadus_morhua
ENSAMXG00000013552pabpc1l8578.231ENSGALG00000004123PABPC1L9884.262Gallus_gallus
ENSAMXG00000013552pabpc1l10077.610ENSGAFG00000021057pabpc1l10077.610Gambusia_affinis
ENSAMXG00000013552pabpc1l9978.309ENSGACG00000002792pabpc1l10078.309Gasterosteus_aculeatus
ENSAMXG00000013552pabpc1l9976.948ENSGAGG00000000589PABPC1L9881.111Gopherus_agassizii
ENSAMXG00000013552pabpc1l9970.400ENSGGOG00000004584PABPC1L9970.767Gorilla_gorilla
ENSAMXG00000013552pabpc1l10080.445ENSHBUG00000006134pabpc1l10080.445Haplochromis_burtoni
ENSAMXG00000013552pabpc1l9966.561ENSHGLG00000008434PABPC1L9967.038Heterocephalus_glaber_female
ENSAMXG00000013552pabpc1l9966.561ENSHGLG00100012151PABPC1L9967.038Heterocephalus_glaber_male
ENSAMXG00000013552pabpc1l5884.831ENSHGLG00100019506-10084.831Heterocephalus_glaber_male
ENSAMXG00000013552pabpc1l9977.280ENSHCOG00000009270pabpc1l10077.280Hippocampus_comes
ENSAMXG00000013552pabpc1l10092.000ENSIPUG00000012602pabpc1l10092.000Ictalurus_punctatus
ENSAMXG00000013552pabpc1l5962.644ENSIPUG00000006760-8862.644Ictalurus_punctatus
ENSAMXG00000013552pabpc1l5963.218ENSIPUG00000006780-8563.218Ictalurus_punctatus
ENSAMXG00000013552pabpc1l9969.649ENSSTOG00000003739PABPC1L9969.649Ictidomys_tridecemlineatus
ENSAMXG00000013552pabpc1l9955.135ENSJJAG00000022406Pabpc1l9953.110Jaculus_jaculus
ENSAMXG00000013552pabpc1l10078.344ENSKMAG00000016847pabpc1l10078.344Kryptolebias_marmoratus
ENSAMXG00000013552pabpc1l10079.173ENSLBEG00000010084pabpc1l10079.173Labrus_bergylta
ENSAMXG00000013552pabpc1l9974.214ENSLACG00000005762PABPC1L9877.180Latimeria_chalumnae
ENSAMXG00000013552pabpc1l9984.810ENSLOCG00000007519pabpc1l9984.810Lepisosteus_oculatus
ENSAMXG00000013552pabpc1l9970.317ENSLAFG00000003553PABPC1L10070.317Loxodonta_africana
ENSAMXG00000013552pabpc1l9970.240ENSMFAG00000040365PABPC1L9971.246Macaca_fascicularis
ENSAMXG00000013552pabpc1l9969.120ENSMNEG00000032298PABPC1L9970.128Macaca_nemestrina
ENSAMXG00000013552pabpc1l9970.240ENSMLEG00000043139PABPC1L9971.246Mandrillus_leucophaeus
ENSAMXG00000013552pabpc1l9779.967ENSMAMG00000011854pabpc1l9779.967Mastacembelus_armatus
ENSAMXG00000013552pabpc1l10080.604ENSMZEG00005023713pabpc1l10080.604Maylandia_zebra
ENSAMXG00000013552pabpc1l9975.758ENSMGAG00000003674PABPC1L9975.758Meleagris_gallopavo
ENSAMXG00000013552pabpc1l9961.392ENSMOCG00000013186Pabpc1l9961.392Microtus_ochrogaster
ENSAMXG00000013552pabpc1l9978.309ENSMMOG00000020574-9095.385Mola_mola
ENSAMXG00000013552pabpc1l9472.287ENSMODG00000016198PABPC1L9972.403Monodelphis_domestica
ENSAMXG00000013552pabpc1l9977.204ENSMALG00000021622pabpc1l10078.818Monopterus_albus
ENSAMXG00000013552pabpc1l9961.635MGP_CAROLIEiJ_G0024627Pabpc1l9961.635Mus_caroli
ENSAMXG00000013552pabpc1l9961.381ENSMUSG00000054582Pabpc1l9961.381Mus_musculus
ENSAMXG00000013552pabpc1l10062.069MGP_PahariEiJ_G0026071Pabpc1l10062.069Mus_pahari
ENSAMXG00000013552pabpc1l9961.250MGP_SPRETEiJ_G0025549Pabpc1l9961.250Mus_spretus
ENSAMXG00000013552pabpc1l9971.725ENSMPUG00000017646PABPC1L9971.725Mustela_putorius_furo
ENSAMXG00000013552pabpc1l9868.153ENSMLUG00000006324PABPC1L9868.153Myotis_lucifugus
ENSAMXG00000013552pabpc1l9963.968ENSNGAG00000010458Pabpc1l9963.968Nannospalax_galili
ENSAMXG00000013552pabpc1l9983.693ENSNBRG00000016633pabpc1l10083.693Neolamprologus_brichardi
ENSAMXG00000013552pabpc1l9067.376ENSMEUG00000007905-8967.376Notamacropus_eugenii
ENSAMXG00000013552pabpc1l9968.320ENSOPRG00000011846PABPC1L9968.320Ochotona_princeps
ENSAMXG00000013552pabpc1l9962.963ENSODEG00000015482PABPC1L9962.963Octodon_degus
ENSAMXG00000013552pabpc1l5978.750ENSODEG00000002920-9778.750Octodon_degus
ENSAMXG00000013552pabpc1l10080.763ENSONIG00000017314pabpc1l10080.763Oreochromis_niloticus
ENSAMXG00000013552pabpc1l9062.872ENSOANG00000015793-10062.872Ornithorhynchus_anatinus
ENSAMXG00000013552pabpc1l9966.361ENSOCUG00000003005PABPC1L9966.870Oryctolagus_cuniculus
ENSAMXG00000013552pabpc1l9980.093ENSORLG00000010322pabpc1l10080.093Oryzias_latipes
ENSAMXG00000013552pabpc1l9980.093ENSORLG00020021193pabpc1l10080.093Oryzias_latipes_hni
ENSAMXG00000013552pabpc1l9980.093ENSORLG00015017018pabpc1l10080.093Oryzias_latipes_hsok
ENSAMXG00000013552pabpc1l10076.024ENSOMEG00000010789pabpc1l10076.024Oryzias_melastigma
ENSAMXG00000013552pabpc1l9970.635ENSOGAG00000032999PABPC1L9970.635Otolemur_garnettii
ENSAMXG00000013552pabpc1l9969.984ENSOARG00000004578PABPC1L9969.984Ovis_aries
ENSAMXG00000013552pabpc1l9970.240ENSPPAG00000039677PABPC1L9970.767Pan_paniscus
ENSAMXG00000013552pabpc1l6269.753ENSPPRG00000019327-9869.753Panthera_pardus
ENSAMXG00000013552pabpc1l9971.452ENSPTIG00000006524PABPC1L9971.452Panthera_tigris_altaica
ENSAMXG00000013552pabpc1l6279.012ENSPTRG00000013531PABPC1L9879.012Pan_troglodytes
ENSAMXG00000013552pabpc1l9970.240ENSPANG00000018788PABPC1L9971.246Papio_anubis
ENSAMXG00000013552pabpc1l10083.307ENSPKIG00000007322pabpc1l10083.307Paramormyrops_kingsleyae
ENSAMXG00000013552pabpc1l5482.443ENSPKIG00000016810-9382.443Paramormyrops_kingsleyae
ENSAMXG00000013552pabpc1l6685.714ENSPSIG00000013289PABPC1L9885.714Pelodiscus_sinensis
ENSAMXG00000013552pabpc1l5774.619ENSPMGG00000023121-9174.619Periophthalmus_magnuspinnatus
ENSAMXG00000013552pabpc1l6088.837ENSPMGG00000023117pabpc1l9294.697Periophthalmus_magnuspinnatus
ENSAMXG00000013552pabpc1l9961.321ENSPEMG00000020671Pabpc1l9961.815Peromyscus_maniculatus_bairdii
ENSAMXG00000013552pabpc1l10080.763ENSPFOG00000013241pabpc1l10080.763Poecilia_formosa
ENSAMXG00000013552pabpc1l5296.923ENSPLAG00000023686-9296.923Poecilia_latipinna
ENSAMXG00000013552pabpc1l10080.604ENSPLAG00000017490-10080.604Poecilia_latipinna
ENSAMXG00000013552pabpc1l10080.445ENSPMEG00000007677pabpc1l10080.445Poecilia_mexicana
ENSAMXG00000013552pabpc1l5296.923ENSPMEG00000009185-8896.923Poecilia_mexicana
ENSAMXG00000013552pabpc1l6686.957ENSPREG00000015886pabpc1l10086.957Poecilia_reticulata
ENSAMXG00000013552pabpc1l9970.080ENSPPYG00000011042PABPC1L9970.767Pongo_abelii
ENSAMXG00000013552pabpc1l6085.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSAMXG00000013552pabpc1l9970.080ENSPCOG00000020630PABPC1L9970.447Propithecus_coquereli
ENSAMXG00000013552pabpc1l9970.288ENSPVAG00000012663PABPC1L9970.288Pteropus_vampyrus
ENSAMXG00000013552pabpc1l9983.933ENSPNYG00000004101pabpc1l10083.933Pundamilia_nyererei
ENSAMXG00000013552pabpc1l10087.520ENSPNAG00000021248pabpc1l10087.520Pygocentrus_nattereri
ENSAMXG00000013552pabpc1l9961.882ENSRNOG00000012750Pabpc1l9962.063Rattus_norvegicus
ENSAMXG00000013552pabpc1l9970.560ENSRBIG00000035381PABPC1L9971.086Rhinopithecus_bieti
ENSAMXG00000013552pabpc1l9970.400ENSRROG00000044498PABPC1L9970.927Rhinopithecus_roxellana
ENSAMXG00000013552pabpc1l9969.968ENSSBOG00000009532-9969.968Saimiri_boliviensis_boliviensis
ENSAMXG00000013552pabpc1l9867.540ENSSHAG00000011446PABPC1L10067.540Sarcophilus_harrisii
ENSAMXG00000013552pabpc1l10084.897ENSSFOG00015017304pabpc1l10084.897Scleropages_formosus
ENSAMXG00000013552pabpc1l10079.585ENSSMAG00000010516pabpc1l9993.564Scophthalmus_maximus
ENSAMXG00000013552pabpc1l10080.096ENSSDUG00000014743pabpc1l10080.096Seriola_dumerili
ENSAMXG00000013552pabpc1l9880.963ENSSLDG00000006981pabpc1l9887.946Seriola_lalandi_dorsalis
ENSAMXG00000013552pabpc1l9975.316ENSSPUG00000004233PABPC1L9975.316Sphenodon_punctatus
ENSAMXG00000013552pabpc1l8881.166ENSSPAG00000017137pabpc1l9881.166Stegastes_partitus
ENSAMXG00000013552pabpc1l9970.673ENSSSCG00000007382PABPC1L9970.673Sus_scrofa
ENSAMXG00000013552pabpc1l10074.339ENSTGUG00000005114PABPC1L10074.339Taeniopygia_guttata
ENSAMXG00000013552pabpc1l9778.818ENSTRUG00000011085pabpc1l9778.818Takifugu_rubripes
ENSAMXG00000013552pabpc1l9976.603ENSTNIG00000017903pabpc1l9876.603Tetraodon_nigroviridis
ENSAMXG00000013552pabpc1l9380.137ENSTBEG00000002851PABPC1L7880.137Tupaia_belangeri
ENSAMXG00000013552pabpc1l9469.309ENSTTRG00000007618PABPC1L10069.622Tursiops_truncatus
ENSAMXG00000013552pabpc1l9969.649ENSUAMG00000017682PABPC1L9969.649Ursus_americanus
ENSAMXG00000013552pabpc1l6677.159ENSUMAG00000025436PABPC1L9277.159Ursus_maritimus
ENSAMXG00000013552pabpc1l9978.261ENSVVUG00000018939PABPC1L9978.261Vulpes_vulpes
ENSAMXG00000013552pabpc1l9971.542ENSXETG00000022831pabpc1l9971.542Xenopus_tropicalis
ENSAMXG00000013552pabpc1l9882.464ENSXCOG00000005459pabpc1l9992.199Xiphophorus_couchianus
ENSAMXG00000013552pabpc1l10080.127ENSXMAG00000017135pabpc1l10080.127Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us