EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000013588 (Gene tree)
Gene ID: 103044723
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 8070 bases
Position: chr13:7820490-7828559
Accession: 103044723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000013998	KH_1	PF00013.29	1.5e-50	1	3
ENSAMXP00000013998	KH_1	PF00013.29	1.5e-50	2	3
ENSAMXP00000013998	KH_1	PF00013.29	1.5e-50	3	3
ENSAMXP00000013998	KH_2	PF07650.17	7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000013998	-	906	XM_022675336	ENSAMXP00000013998	301 (aa)	XP_022531057	W5L2D6

Gene Model

Click here to download ENSAMXG00000013588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013588's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000013588	-	97	76.080	ENSAMXG00000016858	-	95	76.080
ENSAMXG00000013588	-	68	37.500	ENSAMXG00000036582	khsrp	58	37.500
ENSAMXG00000013588	-	88	36.134	ENSAMXG00000032347	igf2bp2b	57	36.134
ENSAMXG00000013588	-	100	86.486	ENSAMXG00000003440	pcbp3	95	86.486
ENSAMXG00000013588	-	55	35.200	ENSAMXG00000029202	-	51	35.200
ENSAMXG00000013588	-	97	63.914	ENSAMXG00000033125	pcbp4	70	63.914
ENSAMXG00000013588	-	78	55.556	ENSAMXG00000011326	hnrnpk	54	55.556
ENSAMXG00000013588	-	71	57.143	ENSAMXG00000006660	hnrpkl	51	57.143
ENSAMXG00000013588	-	97	69.375	ENSAMXG00000001760	zgc:110045	72	69.375
ENSAMXG00000013588	-	97	78.808	ENSAMXG00000037819	pcbp2	95	78.808
ENSAMXG00000013588	-	92	40.299	ENSAMXG00000006702	nova1	86	31.288

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013588	-	100	94.702	ENSAPOG00000020003	pcbp3	86	94.702	Acanthochromis_polyacanthus
ENSAMXG00000013588	-	100	92.903	ENSAPOG00000016582	-	97	92.013	Acanthochromis_polyacanthus
ENSAMXG00000013588	-	98	86.335	ENSAMEG00000001697	-	95	82.738	Ailuropoda_melanoleuca
ENSAMXG00000013588	-	100	87.156	ENSACIG00000010933	pcbp3	99	83.871	Amphilophus_citrinellus
ENSAMXG00000013588	-	100	91.401	ENSACIG00000002739	-	97	91.401	Amphilophus_citrinellus
ENSAMXG00000013588	-	89	91.103	ENSAOCG00000007806	-	96	91.103	Amphiprion_ocellaris
ENSAMXG00000013588	-	100	92.258	ENSAOCG00000008592	-	98	92.258	Amphiprion_ocellaris
ENSAMXG00000013588	-	100	93.182	ENSAPEG00000005209	-	97	93.182	Amphiprion_percula
ENSAMXG00000013588	-	100	85.373	ENSAPEG00000008011	pcbp3	95	85.373	Amphiprion_percula
ENSAMXG00000013588	-	100	88.000	ENSATEG00000015787	-	100	88.000	Anabas_testudineus
ENSAMXG00000013588	-	100	94.426	ENSATEG00000009833	-	97	94.426	Anabas_testudineus
ENSAMXG00000013588	-	98	88.013	ENSAPLG00000002975	-	95	88.013	Anas_platyrhynchos
ENSAMXG00000013588	-	97	74.571	ENSAPLG00000008951	-	78	74.571	Anas_platyrhynchos
ENSAMXG00000013588	-	98	80.925	ENSACAG00000004607	-	96	80.925	Anolis_carolinensis
ENSAMXG00000013588	-	99	80.547	ENSACAG00000009819	-	95	80.547	Anolis_carolinensis
ENSAMXG00000013588	-	92	77.236	ENSANAG00000030702	-	95	92.952	Aotus_nancymaae
ENSAMXG00000013588	-	100	94.702	ENSACLG00000003801	-	96	94.702	Astatotilapia_calliptera
ENSAMXG00000013588	-	100	85.075	ENSACLG00000011835	pcbp3	95	85.075	Astatotilapia_calliptera
ENSAMXG00000013588	-	92	91.266	ENSCAFG00020019472	-	81	91.266	Canis_lupus_dingo
ENSAMXG00000013588	-	98	91.749	ENSCSAG00000007440	-	86	91.749	Chlorocebus_sabaeus
ENSAMXG00000013588	-	99	80.183	ENSCPBG00000000733	-	73	80.183	Chrysemys_picta_bellii
ENSAMXG00000013588	-	98	92.409	ENSCPBG00000012151	-	90	92.409	Chrysemys_picta_bellii
ENSAMXG00000013588	-	100	78.182	ENSCSEG00000016984	-	97	78.182	Cynoglossus_semilaevis
ENSAMXG00000013588	-	100	94.702	ENSCSEG00000000822	pcbp3	99	94.702	Cynoglossus_semilaevis
ENSAMXG00000013588	-	100	85.629	ENSCVAG00000014482	pcbp3	95	85.629	Cyprinodon_variegatus
ENSAMXG00000013588	-	100	92.532	ENSCVAG00000005262	-	97	92.532	Cyprinodon_variegatus
ENSAMXG00000013588	-	100	86.486	ENSDARG00000054378	pcbp3	97	86.486	Danio_rerio
ENSAMXG00000013588	-	98	79.538	ENSETEG00000015988	-	95	79.538	Echinops_telfairi
ENSAMXG00000013588	-	88	73.881	ENSEBUG00000016192	pcbp3	99	73.881	Eptatretus_burgeri
ENSAMXG00000013588	-	97	78.033	ENSEBUG00000007485	-	92	77.169	Eptatretus_burgeri
ENSAMXG00000013588	-	72	71.111	ENSEBUG00000005495	pcbp3	68	71.111	Eptatretus_burgeri
ENSAMXG00000013588	-	100	92.258	ENSELUG00000001560	-	96	84.524	Esox_lucius
ENSAMXG00000013588	-	100	88.889	ENSELUG00000003521	pcbp3	96	88.889	Esox_lucius
ENSAMXG00000013588	-	98	92.384	ENSFALG00000003949	-	95	92.384	Ficedula_albicollis
ENSAMXG00000013588	-	97	74.571	ENSFALG00000004411	-	74	74.571	Ficedula_albicollis
ENSAMXG00000013588	-	100	92.857	ENSFHEG00000006539	-	97	92.857	Fundulus_heteroclitus
ENSAMXG00000013588	-	100	95.017	ENSFHEG00000016615	pcbp3	95	95.017	Fundulus_heteroclitus
ENSAMXG00000013588	-	99	77.410	ENSGMOG00000011992	pcbp3	96	78.012	Gadus_morhua
ENSAMXG00000013588	-	99	67.674	ENSGMOG00000008611	-	100	67.674	Gadus_morhua
ENSAMXG00000013588	-	98	82.390	ENSGALG00000013155	-	98	82.390	Gallus_gallus
ENSAMXG00000013588	-	98	81.341	ENSGALG00000004394	-	98	88.043	Gallus_gallus
ENSAMXG00000013588	-	100	92.258	ENSGAFG00000010274	-	95	92.258	Gambusia_affinis
ENSAMXG00000013588	-	100	85.152	ENSGAFG00000011430	pcbp3	96	85.152	Gambusia_affinis
ENSAMXG00000013588	-	100	76.989	ENSGACG00000014955	-	97	76.989	Gasterosteus_aculeatus
ENSAMXG00000013588	-	99	86.280	ENSGACG00000002266	-	96	86.280	Gasterosteus_aculeatus
ENSAMXG00000013588	-	78	89.130	ENSGAGG00000006956	-	76	89.130	Gopherus_agassizii
ENSAMXG00000013588	-	88	87.970	ENSGAGG00000000271	-	100	87.970	Gopherus_agassizii
ENSAMXG00000013588	-	100	94.702	ENSHBUG00000021782	-	96	94.702	Haplochromis_burtoni
ENSAMXG00000013588	-	100	92.233	ENSHBUG00000010697	pcbp3	98	92.233	Haplochromis_burtoni
ENSAMXG00000013588	-	100	85.886	ENSHCOG00000017868	pcbp3	95	85.886	Hippocampus_comes
ENSAMXG00000013588	-	100	88.026	ENSHCOG00000006067	-	96	88.026	Hippocampus_comes
ENSAMXG00000013588	-	100	95.364	ENSIPUG00000006238	pcbp3	96	95.364	Ictalurus_punctatus
ENSAMXG00000013588	-	100	91.290	ENSKMAG00000018530	-	95	91.290	Kryptolebias_marmoratus
ENSAMXG00000013588	-	100	85.373	ENSKMAG00000003046	pcbp3	95	85.373	Kryptolebias_marmoratus
ENSAMXG00000013588	-	100	79.487	ENSLBEG00000006542	-	96	79.487	Labrus_bergylta
ENSAMXG00000013588	-	100	93.115	ENSLBEG00000006201	pcbp3	95	93.115	Labrus_bergylta
ENSAMXG00000013588	-	97	79.885	ENSLACG00000010386	pcbp3	73	79.885	Latimeria_chalumnae
ENSAMXG00000013588	-	99	74.359	ENSLACG00000010804	zgc:110045	74	74.359	Latimeria_chalumnae
ENSAMXG00000013588	-	97	79.938	ENSLOCG00000005058	zgc:110045	79	79.938	Lepisosteus_oculatus
ENSAMXG00000013588	-	98	86.378	ENSLOCG00000009369	pcbp3	95	86.378	Lepisosteus_oculatus
ENSAMXG00000013588	-	100	93.115	ENSMAMG00000011620	-	97	93.115	Mastacembelus_armatus
ENSAMXG00000013588	-	100	95.017	ENSMAMG00000022336	pcbp3	93	95.017	Mastacembelus_armatus
ENSAMXG00000013588	-	100	87.859	ENSMZEG00005014882	-	95	87.859	Maylandia_zebra
ENSAMXG00000013588	-	100	85.586	ENSMZEG00005008993	pcbp3	98	85.285	Maylandia_zebra
ENSAMXG00000013588	-	98	76.232	ENSMGAG00000001883	-	95	77.681	Meleagris_gallopavo
ENSAMXG00000013588	-	97	74.857	ENSMGAG00000006794	-	74	74.857	Meleagris_gallopavo
ENSAMXG00000013588	-	100	94.702	ENSMMOG00000005216	-	96	94.702	Mola_mola
ENSAMXG00000013588	-	100	90.354	ENSMMOG00000000730	pcbp3	88	90.354	Mola_mola
ENSAMXG00000013588	-	71	73.832	ENSMODG00000027884	-	93	73.832	Monodelphis_domestica
ENSAMXG00000013588	-	99	87.692	ENSMALG00000000691	pcbp3	95	87.692	Monopterus_albus
ENSAMXG00000013588	-	98	83.178	ENSMPUG00000001779	-	87	83.178	Mustela_putorius_furo
ENSAMXG00000013588	-	100	87.963	ENSNBRG00000016409	-	95	87.963	Neolamprologus_brichardi
ENSAMXG00000013588	-	100	87.859	ENSNBRG00000016714	-	95	87.859	Neolamprologus_brichardi
ENSAMXG00000013588	-	99	81.633	ENSOPRG00000003431	-	99	81.633	Ochotona_princeps
ENSAMXG00000013588	-	100	80.966	ENSONIG00000012122	-	98	80.966	Oreochromis_niloticus
ENSAMXG00000013588	-	100	92.258	ENSONIG00000004611	-	97	92.258	Oreochromis_niloticus
ENSAMXG00000013588	-	98	91.722	ENSOCUG00000002696	-	86	91.722	Oryctolagus_cuniculus
ENSAMXG00000013588	-	100	92.258	ENSORLG00000022739	-	97	92.258	Oryzias_latipes
ENSAMXG00000013588	-	100	92.258	ENSORLG00000000059	pcbp3	100	92.258	Oryzias_latipes
ENSAMXG00000013588	-	100	92.258	ENSORLG00020012671	pcbp3	97	92.258	Oryzias_latipes_hni
ENSAMXG00000013588	-	100	94.371	ENSORLG00020006124	-	96	94.371	Oryzias_latipes_hni
ENSAMXG00000013588	-	100	92.258	ENSORLG00015008051	-	95	92.258	Oryzias_latipes_hsok
ENSAMXG00000013588	-	100	92.258	ENSORLG00015000429	pcbp3	97	92.258	Oryzias_latipes_hsok
ENSAMXG00000013588	-	100	94.702	ENSOMEG00000020162	-	96	94.702	Oryzias_melastigma
ENSAMXG00000013588	-	92	94.245	ENSOMEG00000020811	pcbp3	96	94.245	Oryzias_melastigma
ENSAMXG00000013588	-	98	79.310	ENSOGAG00000008044	-	96	79.310	Otolemur_garnettii
ENSAMXG00000013588	-	100	94.408	ENSPKIG00000019329	pcbp3	97	94.408	Paramormyrops_kingsleyae
ENSAMXG00000013588	-	82	83.333	ENSPKIG00000020913	-	86	83.333	Paramormyrops_kingsleyae
ENSAMXG00000013588	-	73	79.835	ENSPSIG00000008350	-	67	79.835	Pelodiscus_sinensis
ENSAMXG00000013588	-	98	78.438	ENSPSIG00000014970	-	95	79.062	Pelodiscus_sinensis
ENSAMXG00000013588	-	99	85.542	ENSPMGG00000022383	pcbp3	95	85.542	Periophthalmus_magnuspinnatus
ENSAMXG00000013588	-	78	84.574	ENSPMAG00000004637	-	97	84.574	Petromyzon_marinus
ENSAMXG00000013588	-	98	73.377	ENSPMAG00000004551	pcbp3	88	73.377	Petromyzon_marinus
ENSAMXG00000013588	-	98	85.583	ENSPCIG00000028092	-	96	86.636	Phascolarctos_cinereus
ENSAMXG00000013588	-	100	81.686	ENSPLAG00000011449	pcbp3	88	81.686	Poecilia_latipinna
ENSAMXG00000013588	-	99	91.290	ENSPLAG00000004074	-	89	91.290	Poecilia_latipinna
ENSAMXG00000013588	-	100	87.937	ENSPMEG00000006653	-	96	87.926	Poecilia_mexicana
ENSAMXG00000013588	-	100	85.671	ENSPMEG00000021239	pcbp3	95	84.821	Poecilia_mexicana
ENSAMXG00000013588	-	100	92.434	ENSPREG00000015736	pcbp3	99	92.434	Poecilia_reticulata
ENSAMXG00000013588	-	100	94.702	ENSPREG00000020585	-	96	94.702	Poecilia_reticulata
ENSAMXG00000013588	-	100	94.702	ENSPNYG00000013205	-	96	94.702	Pundamilia_nyererei
ENSAMXG00000013588	-	100	91.935	ENSPNYG00000012326	pcbp3	95	91.935	Pundamilia_nyererei
ENSAMXG00000013588	-	99	99.333	ENSPNAG00000008541	-	98	99.333	Pygocentrus_nattereri
ENSAMXG00000013588	-	100	92.903	ENSPNAG00000015104	pcbp3	97	92.903	Pygocentrus_nattereri
ENSAMXG00000013588	-	98	91.749	ENSRNOG00000001245	Pcbp3	95	91.749	Rattus_norvegicus
ENSAMXG00000013588	-	98	82.222	ENSRBIG00000028177	-	87	82.222	Rhinopithecus_bieti
ENSAMXG00000013588	-	98	86.646	ENSSHAG00000007890	-	95	86.646	Sarcophilus_harrisii
ENSAMXG00000013588	-	100	93.204	ENSSFOG00015010205	pcbp3	95	93.204	Scleropages_formosus
ENSAMXG00000013588	-	100	85.241	ENSSFOG00015014706	pcbp3	95	85.241	Scleropages_formosus
ENSAMXG00000013588	-	97	85.000	ENSSFOG00015007118	-	93	85.000	Scleropages_formosus
ENSAMXG00000013588	-	100	93.485	ENSSMAG00000003135	-	97	93.485	Scophthalmus_maximus
ENSAMXG00000013588	-	100	94.702	ENSSMAG00000011929	pcbp3	97	94.702	Scophthalmus_maximus
ENSAMXG00000013588	-	100	89.711	ENSSDUG00000008502	-	95	89.711	Seriola_dumerili
ENSAMXG00000013588	-	100	87.730	ENSSDUG00000011608	pcbp3	99	87.730	Seriola_dumerili
ENSAMXG00000013588	-	100	92.903	ENSSLDG00000020161	-	95	92.903	Seriola_lalandi_dorsalis
ENSAMXG00000013588	-	100	87.730	ENSSLDG00000008518	pcbp3	99	87.730	Seriola_lalandi_dorsalis
ENSAMXG00000013588	-	97	75.731	ENSSPUG00000013214	-	90	85.787	Sphenodon_punctatus
ENSAMXG00000013588	-	100	75.152	ENSSPAG00000023341	-	95	75.152	Stegastes_partitus
ENSAMXG00000013588	-	89	91.103	ENSSPAG00000004190	-	96	91.103	Stegastes_partitus
ENSAMXG00000013588	-	98	86.469	ENSTGUG00000008158	-	95	86.469	Taeniopygia_guttata
ENSAMXG00000013588	-	98	83.901	ENSTGUG00000003316	-	95	83.901	Taeniopygia_guttata
ENSAMXG00000013588	-	99	88.372	ENSTRUG00000006280	-	96	88.372	Takifugu_rubripes
ENSAMXG00000013588	-	100	89.130	ENSTRUG00000013604	pcbp3	95	89.130	Takifugu_rubripes
ENSAMXG00000013588	-	98	79.710	ENSTTRG00000015075	-	96	79.710	Tursiops_truncatus
ENSAMXG00000013588	-	98	86.687	ENSXETG00000011483	pcbp1	95	86.687	Xenopus_tropicalis
ENSAMXG00000013588	-	92	74.847	ENSXETG00000010491	pcbp2	72	74.847	Xenopus_tropicalis
ENSAMXG00000013588	-	99	84.821	ENSXCOG00000020481	pcbp3	95	84.821	Xiphophorus_couchianus
ENSAMXG00000013588	-	100	85.373	ENSXMAG00000008175	pcbp3	95	85.373	Xiphophorus_maculatus
ENSAMXG00000013588	-	100	92.581	ENSXMAG00000028711	-	95	92.581	Xiphophorus_maculatus