EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000013700 (Gene tree)
Gene ID: 103037867
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 15034 bases
Position: chrAPWO02001360.1:50047-65080
Accession: 103037867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000014100	Upf2	PF04050.14	1.5e-31	1	1
ENSAMXP00000014100	MIF4G	PF02854.19	8e-78	1	2
ENSAMXP00000014100	MIF4G	PF02854.19	8e-78	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000014100	UPF2-201	4007	XM_007235061	ENSAMXP00000014100	1288 (aa)	XP_007235123	W5L2N8

Gene Model

Click here to download ENSAMXG00000013700's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013700's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013700	UPF2	99	82.799	ENSG00000151461	UPF2	99	82.408	Homo_sapiens
ENSAMXG00000013700	UPF2	99	83.934	ENSAPOG00000015837	UPF2	100	83.699	Acanthochromis_polyacanthus
ENSAMXG00000013700	UPF2	99	83.881	ENSAMEG00000004586	UPF2	99	83.490	Ailuropoda_melanoleuca
ENSAMXG00000013700	UPF2	99	88.976	ENSACIG00000018078	UPF2	100	89.054	Amphilophus_citrinellus
ENSAMXG00000013700	UPF2	99	89.289	ENSAOCG00000016766	UPF2	99	89.367	Amphiprion_ocellaris
ENSAMXG00000013700	UPF2	99	89.367	ENSAPEG00000019084	UPF2	99	89.445	Amphiprion_percula
ENSAMXG00000013700	UPF2	99	89.297	ENSATEG00000021677	UPF2	99	89.375	Anabas_testudineus
ENSAMXG00000013700	UPF2	99	79.515	ENSAPLG00000010287	UPF2	91	82.635	Anas_platyrhynchos
ENSAMXG00000013700	UPF2	99	83.255	ENSACAG00000009259	UPF2	99	82.864	Anolis_carolinensis
ENSAMXG00000013700	UPF2	90	79.709	ENSANAG00000028451	UPF2	93	79.231	Aotus_nancymaae
ENSAMXG00000013700	UPF2	99	89.289	ENSACLG00000012696	UPF2	99	89.367	Astatotilapia_calliptera
ENSAMXG00000013700	UPF2	99	83.568	ENSBTAG00000000288	UPF2	99	83.177	Bos_taurus
ENSAMXG00000013700	UPF2	99	81.925	ENSCJAG00000020685	UPF2	99	82.188	Callithrix_jacchus
ENSAMXG00000013700	UPF2	99	83.725	ENSCAFG00000004839	UPF2	99	83.333	Canis_familiaris
ENSAMXG00000013700	UPF2	94	87.310	ENSCAFG00020005882	UPF2	100	87.755	Canis_lupus_dingo
ENSAMXG00000013700	UPF2	99	83.490	ENSCHIG00000020359	UPF2	99	83.099	Capra_hircus
ENSAMXG00000013700	UPF2	99	83.255	ENSTSYG00000000935	UPF2	97	87.571	Carlito_syrichta
ENSAMXG00000013700	UPF2	90	74.722	ENSCAPG00000016658	UPF2	95	75.386	Cavia_aperea
ENSAMXG00000013700	UPF2	98	79.544	ENSCPOG00000008809	UPF2	100	80.881	Cavia_porcellus
ENSAMXG00000013700	UPF2	99	76.369	ENSCCAG00000035991	UPF2	99	76.128	Cebus_capucinus
ENSAMXG00000013700	UPF2	99	82.877	ENSCATG00000032679	UPF2	99	82.486	Cercocebus_atys
ENSAMXG00000013700	UPF2	99	82.003	ENSCLAG00000011434	UPF2	99	82.629	Chinchilla_lanigera
ENSAMXG00000013700	UPF2	99	82.877	ENSCSAG00000013372	UPF2	99	82.486	Chlorocebus_sabaeus
ENSAMXG00000013700	UPF2	78	89.556	ENSCHOG00000000422	UPF2	81	89.556	Choloepus_hoffmanni
ENSAMXG00000013700	UPF2	99	82.473	ENSCPBG00000027823	UPF2	100	82.238	Chrysemys_picta_bellii
ENSAMXG00000013700	UPF2	78	48.574	ENSCSAVG00000007772	-	99	48.569	Ciona_savignyi
ENSAMXG00000013700	UPF2	99	77.717	ENSCANG00000040396	UPF2	100	78.030	Colobus_angolensis_palliatus
ENSAMXG00000013700	UPF2	99	83.555	ENSCGRG00001019347	Upf2	99	83.477	Cricetulus_griseus_chok1gshd
ENSAMXG00000013700	UPF2	99	83.555	ENSCGRG00000017993	Upf2	99	83.477	Cricetulus_griseus_crigri
ENSAMXG00000013700	UPF2	99	80.031	ENSCSEG00000003520	UPF2	99	81.840	Cynoglossus_semilaevis
ENSAMXG00000013700	UPF2	98	88.346	ENSCVAG00000006167	UPF2	100	88.022	Cyprinodon_variegatus
ENSAMXG00000013700	UPF2	99	83.190	ENSDNOG00000018160	UPF2	99	82.877	Dasypus_novemcinctus
ENSAMXG00000013700	UPF2	99	83.634	ENSDORG00000002478	Upf2	99	83.555	Dipodomys_ordii
ENSAMXG00000013700	UPF2	72	92.701	ENSETEG00000011583	-	63	92.701	Echinops_telfairi
ENSAMXG00000013700	UPF2	64	72.185	ENSEBUG00000012448	-	87	72.185	Eptatretus_burgeri
ENSAMXG00000013700	UPF2	99	82.473	ENSEASG00005019274	UPF2	99	83.099	Equus_asinus_asinus
ENSAMXG00000013700	UPF2	99	82.473	ENSECAG00000017022	UPF2	99	83.099	Equus_caballus
ENSAMXG00000013700	UPF2	81	77.389	ENSEEUG00000007819	UPF2	74	76.266	Erinaceus_europaeus
ENSAMXG00000013700	UPF2	99	87.997	ENSELUG00000012014	UPF2	99	88.698	Esox_lucius
ENSAMXG00000013700	UPF2	99	86.667	ENSFCAG00000005785	UPF2	99	83.255	Felis_catus
ENSAMXG00000013700	UPF2	99	83.333	ENSFALG00000001889	UPF2	98	83.516	Ficedula_albicollis
ENSAMXG00000013700	UPF2	99	81.911	ENSFDAG00000014348	UPF2	99	82.772	Fukomys_damarensis
ENSAMXG00000013700	UPF2	98	88.180	ENSFHEG00000009826	UPF2	99	88.337	Fundulus_heteroclitus
ENSAMXG00000013700	UPF2	90	88.591	ENSGMOG00000005557	UPF2	100	86.271	Gadus_morhua
ENSAMXG00000013700	UPF2	99	83.346	ENSGALG00000033772	UPF2	99	83.450	Gallus_gallus
ENSAMXG00000013700	UPF2	99	85.770	ENSGAFG00000020867	UPF2	99	87.803	Gambusia_affinis
ENSAMXG00000013700	UPF2	89	88.093	ENSGACG00000001080	UPF2	100	86.957	Gasterosteus_aculeatus
ENSAMXG00000013700	UPF2	99	83.020	ENSGAGG00000002700	UPF2	99	82.864	Gopherus_agassizii
ENSAMXG00000013700	UPF2	99	82.799	ENSGGOG00000001479	UPF2	99	82.408	Gorilla_gorilla
ENSAMXG00000013700	UPF2	99	89.367	ENSHBUG00000004249	UPF2	100	89.445	Haplochromis_burtoni
ENSAMXG00000013700	UPF2	99	81.064	ENSHGLG00000015176	-	99	82.188	Heterocephalus_glaber_female
ENSAMXG00000013700	UPF2	99	73.339	ENSHGLG00000003822	-	99	72.557	Heterocephalus_glaber_female
ENSAMXG00000013700	UPF2	99	79.483	ENSHGLG00100010036	UPF2	100	77.392	Heterocephalus_glaber_male
ENSAMXG00000013700	UPF2	99	86.693	ENSHCOG00000004025	UPF2	99	86.381	Hippocampus_comes
ENSAMXG00000013700	UPF2	99	92.796	ENSIPUG00000015524	UPF2	99	92.796	Ictalurus_punctatus
ENSAMXG00000013700	UPF2	99	83.477	ENSSTOG00000013075	UPF2	99	83.399	Ictidomys_tridecemlineatus
ENSAMXG00000013700	UPF2	99	82.616	ENSJJAG00000004913	Upf2	99	82.616	Jaculus_jaculus
ENSAMXG00000013700	UPF2	98	88.513	ENSKMAG00000001071	UPF2	99	88.513	Kryptolebias_marmoratus
ENSAMXG00000013700	UPF2	99	87.266	ENSLBEG00000016394	-	99	88.984	Labrus_bergylta
ENSAMXG00000013700	UPF2	79	85.222	ENSLBEG00000000728	-	93	87.685	Labrus_bergylta
ENSAMXG00000013700	UPF2	99	77.578	ENSLACG00000015945	UPF2	100	77.578	Latimeria_chalumnae
ENSAMXG00000013700	UPF2	99	86.960	ENSLOCG00000015698	UPF2	99	87.618	Lepisosteus_oculatus
ENSAMXG00000013700	UPF2	99	82.877	ENSMFAG00000043865	UPF2	99	82.486	Macaca_fascicularis
ENSAMXG00000013700	UPF2	99	82.877	ENSMMUG00000008241	UPF2	99	82.486	Macaca_mulatta
ENSAMXG00000013700	UPF2	80	82.735	ENSMNEG00000008062	UPF2	99	83.122	Macaca_nemestrina
ENSAMXG00000013700	UPF2	99	80.420	ENSMLEG00000036120	UPF2	100	80.829	Mandrillus_leucophaeus
ENSAMXG00000013700	UPF2	99	88.906	ENSMAMG00000018276	UPF2	99	89.062	Mastacembelus_armatus
ENSAMXG00000013700	UPF2	99	89.289	ENSMZEG00005021595	UPF2	99	89.367	Maylandia_zebra
ENSAMXG00000013700	UPF2	99	82.759	ENSMGAG00000004573	UPF2	99	82.864	Meleagris_gallopavo
ENSAMXG00000013700	UPF2	99	81.519	ENSMAUG00000016512	Upf2	99	81.441	Mesocricetus_auratus
ENSAMXG00000013700	UPF2	94	87.310	ENSMICG00000001716	UPF2	99	87.755	Microcebus_murinus
ENSAMXG00000013700	UPF2	99	82.146	ENSMOCG00000008263	Upf2	99	83.320	Microtus_ochrogaster
ENSAMXG00000013700	UPF2	99	86.129	ENSMMOG00000006528	UPF2	100	85.737	Mola_mola
ENSAMXG00000013700	UPF2	99	82.551	ENSMODG00000016794	UPF2	99	82.864	Monodelphis_domestica
ENSAMXG00000013700	UPF2	99	87.784	ENSMALG00000002663	UPF2	100	87.940	Monopterus_albus
ENSAMXG00000013700	UPF2	99	83.399	MGP_CAROLIEiJ_G0023157	Upf2	99	85.951	Mus_caroli
ENSAMXG00000013700	UPF2	99	83.634	ENSMUSG00000043241	Upf2	99	84.381	Mus_musculus
ENSAMXG00000013700	UPF2	99	83.555	MGP_PahariEiJ_G0019217	Upf2	99	84.190	Mus_pahari
ENSAMXG00000013700	UPF2	99	83.868	MGP_SPRETEiJ_G0024075	Upf2	99	84.381	Mus_spretus
ENSAMXG00000013700	UPF2	99	83.881	ENSMPUG00000001064	UPF2	99	83.490	Mustela_putorius_furo
ENSAMXG00000013700	UPF2	99	82.812	ENSMLUG00000000228	UPF2	100	82.866	Myotis_lucifugus
ENSAMXG00000013700	UPF2	99	89.367	ENSNBRG00000013629	UPF2	99	89.445	Neolamprologus_brichardi
ENSAMXG00000013700	UPF2	99	82.799	ENSNLEG00000012058	UPF2	99	82.408	Nomascus_leucogenys
ENSAMXG00000013700	UPF2	71	90.845	ENSOPRG00000006801	-	73	90.845	Ochotona_princeps
ENSAMXG00000013700	UPF2	99	82.003	ENSODEG00000001290	UPF2	99	82.551	Octodon_degus
ENSAMXG00000013700	UPF2	99	89.289	ENSONIG00000017991	UPF2	99	89.367	Oreochromis_niloticus
ENSAMXG00000013700	UPF2	99	82.257	ENSOCUG00000006230	UPF2	100	82.490	Oryctolagus_cuniculus
ENSAMXG00000013700	UPF2	99	87.822	ENSORLG00000017189	UPF2	99	88.056	Oryzias_latipes
ENSAMXG00000013700	UPF2	99	87.900	ENSORLG00020005969	UPF2	99	88.134	Oryzias_latipes_hni
ENSAMXG00000013700	UPF2	99	87.978	ENSORLG00015005713	UPF2	99	88.212	Oryzias_latipes_hsok
ENSAMXG00000013700	UPF2	99	84.922	ENSOMEG00000023420	UPF2	98	85.000	Oryzias_melastigma
ENSAMXG00000013700	UPF2	99	83.255	ENSOGAG00000005796	UPF2	99	82.864	Otolemur_garnettii
ENSAMXG00000013700	UPF2	99	83.359	ENSOARG00000014587	UPF2	99	82.969	Ovis_aries
ENSAMXG00000013700	UPF2	99	79.876	ENSPPAG00000037953	UPF2	100	80.312	Pan_paniscus
ENSAMXG00000013700	UPF2	99	83.646	ENSPPRG00000000690	UPF2	99	83.255	Panthera_pardus
ENSAMXG00000013700	UPF2	99	83.646	ENSPTIG00000008867	UPF2	99	83.255	Panthera_tigris_altaica
ENSAMXG00000013700	UPF2	99	82.799	ENSPTRG00000002291	UPF2	99	82.408	Pan_troglodytes
ENSAMXG00000013700	UPF2	99	82.877	ENSPANG00000023399	UPF2	99	82.486	Papio_anubis
ENSAMXG00000013700	UPF2	99	87.344	ENSPKIG00000025502	UPF2	99	87.891	Paramormyrops_kingsleyae
ENSAMXG00000013700	UPF2	59	81.686	ENSPSIG00000015158	UPF2	95	81.686	Pelodiscus_sinensis
ENSAMXG00000013700	UPF2	99	85.200	ENSPMGG00000005259	UPF2	100	85.513	Periophthalmus_magnuspinnatus
ENSAMXG00000013700	UPF2	92	75.504	ENSPEMG00000015731	Upf2	99	75.504	Peromyscus_maniculatus_bairdii
ENSAMXG00000013700	UPF2	99	82.629	ENSPCIG00000006656	UPF2	100	82.864	Phascolarctos_cinereus
ENSAMXG00000013700	UPF2	99	86.161	ENSPFOG00000017118	UPF2	99	88.507	Poecilia_formosa
ENSAMXG00000013700	UPF2	99	86.161	ENSPLAG00000005094	UPF2	99	88.507	Poecilia_latipinna
ENSAMXG00000013700	UPF2	99	86.083	ENSPMEG00000017009	UPF2	99	88.428	Poecilia_mexicana
ENSAMXG00000013700	UPF2	99	85.278	ENSPREG00000021880	UPF2	100	87.627	Poecilia_reticulata
ENSAMXG00000013700	UPF2	65	85.936	ENSPPYG00000002089	-	99	85.340	Pongo_abelii
ENSAMXG00000013700	UPF2	99	71.283	ENSPCAG00000000684	UPF2	99	70.859	Procavia_capensis
ENSAMXG00000013700	UPF2	99	76.466	ENSPVAG00000017286	UPF2	99	76.190	Pteropus_vampyrus
ENSAMXG00000013700	UPF2	99	86.787	ENSPNYG00000017096	UPF2	100	86.865	Pundamilia_nyererei
ENSAMXG00000013700	UPF2	99	95.928	ENSPNAG00000009357	UPF2	99	95.928	Pygocentrus_nattereri
ENSAMXG00000013700	UPF2	99	79.391	ENSRNOG00000023593	Upf2	98	95.455	Rattus_norvegicus
ENSAMXG00000013700	UPF2	99	81.989	ENSRBIG00000037780	UPF2	100	81.911	Rhinopithecus_bieti
ENSAMXG00000013700	UPF2	99	82.942	ENSRROG00000043547	UPF2	99	82.864	Rhinopithecus_roxellana
ENSAMXG00000013700	UPF2	99	82.459	ENSSBOG00000020012	UPF2	99	82.330	Saimiri_boliviensis_boliviensis
ENSAMXG00000013700	UPF2	99	87.109	ENSSFOG00015023788	upf2	100	86.885	Scleropages_formosus
ENSAMXG00000013700	UPF2	89	89.168	ENSSMAG00000007637	UPF2	100	86.466	Scophthalmus_maximus
ENSAMXG00000013700	UPF2	100	88.777	ENSSDUG00000017244	UPF2	99	89.523	Seriola_dumerili
ENSAMXG00000013700	UPF2	99	86.922	ENSSLDG00000016866	UPF2	100	86.599	Seriola_lalandi_dorsalis
ENSAMXG00000013700	UPF2	99	82.394	ENSSARG00000008615	UPF2	99	82.003	Sorex_araneus
ENSAMXG00000013700	UPF2	99	80.793	ENSSPUG00000014544	UPF2	99	80.751	Sphenodon_punctatus
ENSAMXG00000013700	UPF2	67	85.632	ENSSSCG00000011117	-	99	84.977	Sus_scrofa
ENSAMXG00000013700	UPF2	99	83.320	ENSTGUG00000002163	-	100	83.112	Taeniopygia_guttata
ENSAMXG00000013700	UPF2	99	87.500	ENSTRUG00000007519	UPF2	99	87.656	Takifugu_rubripes
ENSAMXG00000013700	UPF2	99	84.243	ENSTNIG00000004453	UPF2	99	82.683	Tetraodon_nigroviridis
ENSAMXG00000013700	UPF2	92	75.694	ENSTBEG00000012679	UPF2	93	75.505	Tupaia_belangeri
ENSAMXG00000013700	UPF2	99	81.925	ENSTTRG00000016388	UPF2	99	82.786	Tursiops_truncatus
ENSAMXG00000013700	UPF2	87	95.506	ENSUAMG00000023560	UPF2	98	95.506	Ursus_americanus
ENSAMXG00000013700	UPF2	99	83.803	ENSUMAG00000012953	UPF2	95	83.412	Ursus_maritimus
ENSAMXG00000013700	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSAMXG00000013700	UPF2	99	83.725	ENSVVUG00000006166	UPF2	99	83.333	Vulpes_vulpes
ENSAMXG00000013700	UPF2	99	78.315	ENSXETG00000033103	UPF2	91	83.983	Xenopus_tropicalis
ENSAMXG00000013700	UPF2	99	86.083	ENSXCOG00000011604	UPF2	100	88.194	Xiphophorus_couchianus
ENSAMXG00000013700	UPF2	99	86.161	ENSXMAG00000017209	UPF2	99	88.428	Xiphophorus_maculatus