EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000013879 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-153b23.4
Alias: fj08f03|fj10b02|im:7041150|wu:fj08f03|wu:fj10b02
Full Name: uncharacterized LOC103041563
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6190 bases
Position: chr24:19577124-19583313
Accession: 103041563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000014280	Sua5_yciO_yrdC	PF01300.18	6.9e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000014280	-	2532	XM_007228479	ENSAMXP00000014280	844 (aa)	XP_007228541	W5L368

Gene Model

Click here to download ENSAMXG00000013879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013879's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000013879	si:ch211-153b23.4	74	30.294	ENSAMXG00000038564	si:ch211-153b23.3	72	30.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013879	si:ch211-153b23.4	94	71.766	ENSAPOG00000006178	si:ch211-153b23.4	93	71.766	Acanthochromis_polyacanthus
ENSAMXG00000013879	si:ch211-153b23.4	96	70.956	ENSAPOG00000006144	si:ch211-153b23.4	93	71.750	Acanthochromis_polyacanthus
ENSAMXG00000013879	si:ch211-153b23.4	98	71.309	ENSACIG00000006997	si:ch211-153b23.4	98	71.309	Amphilophus_citrinellus
ENSAMXG00000013879	si:ch211-153b23.4	77	30.087	ENSAOCG00000010974	si:ch211-153b23.3	77	30.087	Amphiprion_ocellaris
ENSAMXG00000013879	si:ch211-153b23.4	92	69.720	ENSAOCG00000010999	si:ch211-153b23.4	95	69.720	Amphiprion_ocellaris
ENSAMXG00000013879	si:ch211-153b23.4	98	68.900	ENSAPEG00000014665	si:ch211-153b23.4	98	68.900	Amphiprion_percula
ENSAMXG00000013879	si:ch211-153b23.4	99	70.907	ENSATEG00000004948	si:ch211-153b23.4	97	70.907	Anabas_testudineus
ENSAMXG00000013879	si:ch211-153b23.4	94	61.816	ENSAPLG00000013596	-	97	61.816	Anas_platyrhynchos
ENSAMXG00000013879	si:ch211-153b23.4	99	69.421	ENSACLG00000005471	si:ch211-153b23.4	96	69.421	Astatotilapia_calliptera
ENSAMXG00000013879	si:ch211-153b23.4	96	69.756	ENSCSEG00000014838	si:ch211-153b23.4	97	69.756	Cynoglossus_semilaevis
ENSAMXG00000013879	si:ch211-153b23.4	95	73.821	ENSCVAG00000021145	si:ch211-153b23.4	100	73.821	Cyprinodon_variegatus
ENSAMXG00000013879	si:ch211-153b23.4	76	30.236	ENSCVAG00000021124	si:ch211-153b23.3	77	30.117	Cyprinodon_variegatus
ENSAMXG00000013879	si:ch211-153b23.4	100	74.707	ENSDARG00000077169	si:ch211-153b23.4	97	74.736	Danio_rerio
ENSAMXG00000013879	si:ch211-153b23.4	99	67.609	ENSELUG00000004961	si:ch211-153b23.4	95	67.609	Esox_lucius
ENSAMXG00000013879	si:ch211-153b23.4	94	58.052	ENSFALG00000011343	-	92	58.052	Ficedula_albicollis
ENSAMXG00000013879	si:ch211-153b23.4	94	73.684	ENSFHEG00000010001	si:ch211-153b23.4	100	73.684	Fundulus_heteroclitus
ENSAMXG00000013879	si:ch211-153b23.4	76	30.147	ENSFHEG00000010030	si:ch211-153b23.3	77	30.029	Fundulus_heteroclitus
ENSAMXG00000013879	si:ch211-153b23.4	84	72.727	ENSFHEG00000009888	si:ch211-153b23.4	80	72.727	Fundulus_heteroclitus
ENSAMXG00000013879	si:ch211-153b23.4	77	30.825	ENSGAFG00000007455	si:ch211-153b23.3	77	30.825	Gambusia_affinis
ENSAMXG00000013879	si:ch211-153b23.4	88	71.733	ENSGAFG00000007442	si:ch211-153b23.4	90	71.921	Gambusia_affinis
ENSAMXG00000013879	si:ch211-153b23.4	97	71.221	ENSGACG00000018253	si:ch211-153b23.4	97	71.221	Gasterosteus_aculeatus
ENSAMXG00000013879	si:ch211-153b23.4	86	62.158	ENSGAGG00000024601	-	97	62.158	Gopherus_agassizii
ENSAMXG00000013879	si:ch211-153b23.4	61	32.576	ENSHBUG00000001760	si:ch211-153b23.3	59	32.576	Haplochromis_burtoni
ENSAMXG00000013879	si:ch211-153b23.4	79	71.068	ENSHBUG00000000013	si:ch211-153b23.4	89	71.068	Haplochromis_burtoni
ENSAMXG00000013879	si:ch211-153b23.4	96	79.731	ENSIPUG00000015205	si:ch211-153b23.4	97	79.731	Ictalurus_punctatus
ENSAMXG00000013879	si:ch211-153b23.4	74	30.590	ENSIPUG00000015213	si:ch211-153b23.3	72	30.590	Ictalurus_punctatus
ENSAMXG00000013879	si:ch211-153b23.4	76	30.479	ENSKMAG00000006792	si:ch211-153b23.3	76	30.479	Kryptolebias_marmoratus
ENSAMXG00000013879	si:ch211-153b23.4	99	70.623	ENSKMAG00000006919	-	97	70.623	Kryptolebias_marmoratus
ENSAMXG00000013879	si:ch211-153b23.4	94	73.392	ENSKMAG00000006829	si:ch211-153b23.4	98	73.392	Kryptolebias_marmoratus
ENSAMXG00000013879	si:ch211-153b23.4	99	70.671	ENSLBEG00000026309	si:ch211-153b23.4	95	70.784	Labrus_bergylta
ENSAMXG00000013879	si:ch211-153b23.4	95	64.865	ENSLACG00000017592	si:ch211-153b23.4	97	64.865	Latimeria_chalumnae
ENSAMXG00000013879	si:ch211-153b23.4	74	30.864	ENSLACG00000005800	-	76	30.864	Latimeria_chalumnae
ENSAMXG00000013879	si:ch211-153b23.4	96	73.652	ENSMAMG00000009358	si:ch211-153b23.4	100	73.652	Mastacembelus_armatus
ENSAMXG00000013879	si:ch211-153b23.4	61	32.246	ENSMAMG00000009328	si:ch211-153b23.3	58	32.246	Mastacembelus_armatus
ENSAMXG00000013879	si:ch211-153b23.4	98	72.082	ENSMAMG00000009277	si:ch211-153b23.4	99	72.202	Mastacembelus_armatus
ENSAMXG00000013879	si:ch211-153b23.4	96	71.324	ENSMZEG00005011433	si:ch211-153b23.4	99	71.324	Maylandia_zebra
ENSAMXG00000013879	si:ch211-153b23.4	94	61.270	ENSMGAG00000005478	-	97	61.270	Meleagris_gallopavo
ENSAMXG00000013879	si:ch211-153b23.4	95	73.201	ENSMMOG00000004425	si:ch211-153b23.4	100	73.201	Mola_mola
ENSAMXG00000013879	si:ch211-153b23.4	94	71.662	ENSNBRG00000013392	si:ch211-153b23.4	100	71.662	Neolamprologus_brichardi
ENSAMXG00000013879	si:ch211-153b23.4	61	32.584	ENSNBRG00000013370	si:ch211-153b23.3	59	32.584	Neolamprologus_brichardi
ENSAMXG00000013879	si:ch211-153b23.4	100	69.412	ENSONIG00000017875	si:ch211-153b23.4	97	69.412	Oreochromis_niloticus
ENSAMXG00000013879	si:ch211-153b23.4	99	68.508	ENSORLG00000006169	si:ch211-153b23.4	97	68.508	Oryzias_latipes
ENSAMXG00000013879	si:ch211-153b23.4	99	68.625	ENSORLG00020009905	si:ch211-153b23.4	97	68.743	Oryzias_latipes_hni
ENSAMXG00000013879	si:ch211-153b23.4	99	68.897	ENSORLG00015003709	si:ch211-153b23.4	97	68.897	Oryzias_latipes_hsok
ENSAMXG00000013879	si:ch211-153b23.4	77	30.725	ENSOMEG00000007661	si:ch211-153b23.3	78	30.725	Oryzias_melastigma
ENSAMXG00000013879	si:ch211-153b23.4	98	70.490	ENSOMEG00000007682	si:ch211-153b23.4	96	69.575	Oryzias_melastigma
ENSAMXG00000013879	si:ch211-153b23.4	97	67.913	ENSPKIG00000014429	si:ch211-153b23.4	98	67.758	Paramormyrops_kingsleyae
ENSAMXG00000013879	si:ch211-153b23.4	98	70.644	ENSPKIG00000025681	si:ch211-153b23.4	97	70.644	Paramormyrops_kingsleyae
ENSAMXG00000013879	si:ch211-153b23.4	93	57.716	ENSPMGG00000001313	si:ch211-153b23.4	88	57.716	Periophthalmus_magnuspinnatus
ENSAMXG00000013879	si:ch211-153b23.4	80	74.487	ENSPFOG00000012164	si:ch211-153b23.4	95	74.487	Poecilia_formosa
ENSAMXG00000013879	si:ch211-153b23.4	61	34.023	ENSPFOG00000012289	si:ch211-153b23.3	59	34.023	Poecilia_formosa
ENSAMXG00000013879	si:ch211-153b23.4	77	30.435	ENSPLAG00000016320	si:ch211-153b23.3	59	33.270	Poecilia_latipinna
ENSAMXG00000013879	si:ch211-153b23.4	95	72.478	ENSPLAG00000016295	si:ch211-153b23.4	100	72.478	Poecilia_latipinna
ENSAMXG00000013879	si:ch211-153b23.4	61	33.396	ENSPMEG00000008884	si:ch211-153b23.3	58	33.396	Poecilia_mexicana
ENSAMXG00000013879	si:ch211-153b23.4	93	71.122	ENSPMEG00000007538	si:ch211-153b23.4	96	71.122	Poecilia_mexicana
ENSAMXG00000013879	si:ch211-153b23.4	96	71.078	ENSPNYG00000000250	si:ch211-153b23.4	99	71.078	Pundamilia_nyererei
ENSAMXG00000013879	si:ch211-153b23.4	61	32.576	ENSPNYG00000000251	si:ch211-153b23.3	59	32.576	Pundamilia_nyererei
ENSAMXG00000013879	si:ch211-153b23.4	99	83.039	ENSPNAG00000019554	si:ch211-153b23.4	96	83.039	Pygocentrus_nattereri
ENSAMXG00000013879	si:ch211-153b23.4	99	68.852	ENSSFOG00015003920	-	96	68.852	Scleropages_formosus
ENSAMXG00000013879	si:ch211-153b23.4	59	34.019	ENSSFOG00015009030	-	83	33.818	Scleropages_formosus
ENSAMXG00000013879	si:ch211-153b23.4	99	73.113	ENSSFOG00015010891	si:ch211-153b23.4	96	73.955	Scleropages_formosus
ENSAMXG00000013879	si:ch211-153b23.4	61	32.402	ENSSFOG00015010910	si:ch211-153b23.3	60	32.210	Scleropages_formosus
ENSAMXG00000013879	si:ch211-153b23.4	99	70.937	ENSSMAG00000010067	si:ch211-153b23.4	97	70.937	Scophthalmus_maximus
ENSAMXG00000013879	si:ch211-153b23.4	79	70.685	ENSSDUG00000006931	si:ch211-153b23.4	92	70.458	Seriola_dumerili
ENSAMXG00000013879	si:ch211-153b23.4	95	73.573	ENSSDUG00000006671	si:ch211-153b23.4	100	73.573	Seriola_dumerili
ENSAMXG00000013879	si:ch211-153b23.4	85	70.667	ENSSDUG00000006842	si:ch211-153b23.4	92	70.667	Seriola_dumerili
ENSAMXG00000013879	si:ch211-153b23.4	94	61.644	ENSTGUG00000005499	-	98	61.644	Taeniopygia_guttata
ENSAMXG00000013879	si:ch211-153b23.4	95	71.375	ENSTRUG00000003247	si:ch211-153b23.4	100	71.375	Takifugu_rubripes
ENSAMXG00000013879	si:ch211-153b23.4	95	71.270	ENSTNIG00000008958	si:ch211-153b23.4	97	71.393	Tetraodon_nigroviridis
ENSAMXG00000013879	si:ch211-153b23.4	99	54.724	ENSXETG00000004489	-	95	54.724	Xenopus_tropicalis
ENSAMXG00000013879	si:ch211-153b23.4	95	72.277	ENSXMAG00000021388	si:ch211-153b23.4	97	72.448	Xiphophorus_maculatus
ENSAMXG00000013879	si:ch211-153b23.4	77	30.736	ENSXMAG00000029318	si:ch211-153b23.3	77	30.736	Xiphophorus_maculatus
ENSAMXG00000013879	si:ch211-153b23.4	98	70.918	ENSXMAG00000009416	-	98	70.918	Xiphophorus_maculatus