EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000013884 (Gene tree)
Gene ID: 103023235
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4523 bases
Position: chrAPWO02000027.1:11014647-11019169
Accession: 103023235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030994	TUDOR	PF00567.24	0.00033	1	1
ENSAMXP00000014288	TUDOR	PF00567.24	0.00034	1	1
ENSAMXP00000014288	SMN	PF06003.12	8e-121	1	1
ENSAMXP00000030994	SMN	PF06003.12	2e-119	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033609	-	912	-	ENSAMXP00000030994	303 (aa)	-	-
ENSAMXT00000014288	-	834	XM_007258321	ENSAMXP00000014288	277 (aa)	XP_007258383	W5L376

Gene Model

Click here to download ENSAMXG00000013884's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000013884's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000013884	smn1	97	49.265	ENSG00000172062	SMN1	54	57.746	Homo_sapiens
ENSAMXG00000013884	smn1	97	49.265	ENSG00000205571	SMN2	83	65.000	Homo_sapiens
ENSAMXG00000013884	smn1	100	65.614	ENSAPOG00000011324	smn1	100	63.732	Acanthochromis_polyacanthus
ENSAMXG00000013884	smn1	93	63.258	ENSACIG00000019772	-	99	57.034	Amphilophus_citrinellus
ENSAMXG00000013884	smn1	60	60.714	ENSACIG00000007598	smn1	88	62.420	Amphilophus_citrinellus
ENSAMXG00000013884	smn1	100	64.912	ENSAOCG00000024444	smn1	100	63.380	Amphiprion_ocellaris
ENSAMXG00000013884	smn1	100	65.263	ENSAPEG00000016504	smn1	100	63.732	Amphiprion_percula
ENSAMXG00000013884	smn1	95	65.314	ENSATEG00000002182	smn1	82	59.259	Anabas_testudineus
ENSAMXG00000013884	smn1	70	52.475	ENSAPLG00000010912	-	98	48.469	Anas_platyrhynchos
ENSAMXG00000013884	smn1	98	63.701	ENSACLG00000007308	smn1	96	62.143	Astatotilapia_calliptera
ENSAMXG00000013884	smn1	97	48.780	ENSBTAG00000005743	SMN2	82	44.364	Bos_taurus
ENSAMXG00000013884	smn1	97	47.794	ENSCJAG00000016290	-	54	57.746	Callithrix_jacchus
ENSAMXG00000013884	smn1	97	50.523	ENSTSYG00000012058	-	55	58.451	Carlito_syrichta
ENSAMXG00000013884	smn1	97	47.222	ENSCPOG00000012328	-	50	55.034	Cavia_porcellus
ENSAMXG00000013884	smn1	97	47.794	ENSCCAG00000018127	-	54	57.746	Cebus_capucinus
ENSAMXG00000013884	smn1	97	47.653	ENSCATG00000037002	-	54	56.338	Cercocebus_atys
ENSAMXG00000013884	smn1	97	47.312	ENSCLAG00000000284	-	55	55.102	Chinchilla_lanigera
ENSAMXG00000013884	smn1	99	52.098	ENSCPBG00000010968	-	99	52.672	Chrysemys_picta_bellii
ENSAMXG00000013884	smn1	97	45.255	ENSCANG00000033324	-	93	42.593	Colobus_angolensis_palliatus
ENSAMXG00000013884	smn1	97	49.818	ENSCANG00000038242	-	54	57.746	Colobus_angolensis_palliatus
ENSAMXG00000013884	smn1	70	42.308	ENSCGRG00001016998	-	92	36.803	Cricetulus_griseus_chok1gshd
ENSAMXG00000013884	smn1	95	51.825	ENSCGRG00001017959	-	93	50.000	Cricetulus_griseus_chok1gshd
ENSAMXG00000013884	smn1	95	51.825	ENSCGRG00000007698	Smn1	93	50.000	Cricetulus_griseus_crigri
ENSAMXG00000013884	smn1	97	55.749	ENSCSEG00000015227	smn1	61	55.367	Cynoglossus_semilaevis
ENSAMXG00000013884	smn1	100	62.500	ENSCVAG00000007498	smn1	100	58.681	Cyprinodon_variegatus
ENSAMXG00000013884	smn1	100	69.643	ENSDARG00000018494	smn1	99	68.929	Danio_rerio
ENSAMXG00000013884	smn1	94	42.146	ENSDORG00000007082	Smn1	91	43.077	Dipodomys_ordii
ENSAMXG00000013884	smn1	62	44.633	ENSETEG00000001406	-	61	54.400	Echinops_telfairi
ENSAMXG00000013884	smn1	100	39.617	ENSEBUG00000011902	smn1	96	40.418	Eptatretus_burgeri
ENSAMXG00000013884	smn1	88	44.697	ENSEEUG00000015777	-	53	56.489	Erinaceus_europaeus
ENSAMXG00000013884	smn1	99	66.788	ENSELUG00000018067	smn1	100	66.667	Esox_lucius
ENSAMXG00000013884	smn1	97	49.458	ENSFCAG00000028292	SMN	55	57.042	Felis_catus
ENSAMXG00000013884	smn1	97	64.158	ENSFHEG00000018508	smn1	100	59.928	Fundulus_heteroclitus
ENSAMXG00000013884	smn1	100	58.214	ENSGMOG00000017279	smn1	98	55.714	Gadus_morhua
ENSAMXG00000013884	smn1	96	57.037	ENSGALG00000002430	SMN	52	63.768	Gallus_gallus
ENSAMXG00000013884	smn1	100	65.493	ENSGAFG00000009501	smn1	100	64.789	Gambusia_affinis
ENSAMXG00000013884	smn1	100	67.143	ENSGACG00000010584	smn1	97	65.108	Gasterosteus_aculeatus
ENSAMXG00000013884	smn1	97	38.424	ENSGAGG00000013639	-	54	54.545	Gopherus_agassizii
ENSAMXG00000013884	smn1	99	52.837	ENSGAGG00000011374	-	97	52.482	Gopherus_agassizii
ENSAMXG00000013884	smn1	92	49.421	ENSGGOG00000003872	-	58	57.746	Gorilla_gorilla
ENSAMXG00000013884	smn1	56	55.696	ENSGGOG00000026704	-	66	58.571	Gorilla_gorilla
ENSAMXG00000013884	smn1	100	66.786	ENSHBUG00000013987	smn1	100	65.000	Haplochromis_burtoni
ENSAMXG00000013884	smn1	93	47.388	ENSHGLG00100018676	-	51	49.007	Heterocephalus_glaber_male
ENSAMXG00000013884	smn1	94	63.910	ENSHCOG00000017136	smn1	89	56.716	Hippocampus_comes
ENSAMXG00000013884	smn1	100	77.778	ENSIPUG00000012580	smn1	97	71.053	Ictalurus_punctatus
ENSAMXG00000013884	smn1	92	49.811	ENSSTOG00000012288	-	52	55.634	Ictidomys_tridecemlineatus
ENSAMXG00000013884	smn1	100	63.509	ENSKMAG00000007239	smn1	100	60.777	Kryptolebias_marmoratus
ENSAMXG00000013884	smn1	100	63.986	ENSLBEG00000022550	smn1	100	61.053	Labrus_bergylta
ENSAMXG00000013884	smn1	100	60.284	ENSLOCG00000011339	smn1	100	59.929	Lepisosteus_oculatus
ENSAMXG00000013884	smn1	97	48.375	ENSMFAG00000031523	SMN1	54	57.746	Macaca_fascicularis
ENSAMXG00000013884	smn1	97	48.375	ENSMMUG00000020214	SMN1	54	57.746	Macaca_mulatta
ENSAMXG00000013884	smn1	97	47.826	ENSMNEG00000035094	-	54	57.746	Macaca_nemestrina
ENSAMXG00000013884	smn1	97	48.375	ENSMLEG00000041902	-	54	57.746	Mandrillus_leucophaeus
ENSAMXG00000013884	smn1	100	65.614	ENSMAMG00000011034	smn1	100	58.803	Mastacembelus_armatus
ENSAMXG00000013884	smn1	100	67.260	ENSMZEG00005013634	smn1	100	65.357	Maylandia_zebra
ENSAMXG00000013884	smn1	70	53.608	ENSMGAG00000008889	-	96	52.062	Meleagris_gallopavo
ENSAMXG00000013884	smn1	94	48.352	ENSMAUG00000010262	Smn1	92	49.254	Mesocricetus_auratus
ENSAMXG00000013884	smn1	56	55.063	ENSMICG00000034708	-	63	57.857	Microcebus_murinus
ENSAMXG00000013884	smn1	95	51.095	ENSMOCG00000017833	Smn1	93	48.889	Microtus_ochrogaster
ENSAMXG00000013884	smn1	98	58.545	ENSMMOG00000005504	smn1	99	56.884	Mola_mola
ENSAMXG00000013884	smn1	100	65.972	ENSMALG00000008025	smn1	100	60.279	Monopterus_albus
ENSAMXG00000013884	smn1	95	49.817	MGP_CAROLIEiJ_G0018836	Smn1	93	48.881	Mus_caroli
ENSAMXG00000013884	smn1	95	49.817	ENSMUSG00000021645	Smn1	93	48.881	Mus_musculus
ENSAMXG00000013884	smn1	95	51.103	MGP_PahariEiJ_G0015911	Smn1	93	50.186	Mus_pahari
ENSAMXG00000013884	smn1	95	49.817	MGP_SPRETEiJ_G0019718	Smn1	93	48.881	Mus_spretus
ENSAMXG00000013884	smn1	93	48.496	ENSMPUG00000014470	-	50	53.147	Mustela_putorius_furo
ENSAMXG00000013884	smn1	98	50.177	ENSNGAG00000019833	Smn1	95	48.736	Nannospalax_galili
ENSAMXG00000013884	smn1	100	66.901	ENSNBRG00000023000	smn1	100	65.724	Neolamprologus_brichardi
ENSAMXG00000013884	smn1	97	49.265	ENSNLEG00000004454	-	54	57.746	Nomascus_leucogenys
ENSAMXG00000013884	smn1	100	66.549	ENSONIG00000011799	smn1	100	65.371	Oreochromis_niloticus
ENSAMXG00000013884	smn1	95	50.890	ENSOANG00000001626	-	95	54.511	Ornithorhynchus_anatinus
ENSAMXG00000013884	smn1	98	47.119	ENSOCUG00000026649	-	51	53.741	Oryctolagus_cuniculus
ENSAMXG00000013884	smn1	97	48.611	ENSOCUG00000017097	-	50	57.042	Oryctolagus_cuniculus
ENSAMXG00000013884	smn1	100	63.322	ENSORLG00000010552	smn1	100	65.845	Oryzias_latipes
ENSAMXG00000013884	smn1	100	60.932	ENSORLG00020007936	smn1	100	58.596	Oryzias_latipes_hni
ENSAMXG00000013884	smn1	100	65.493	ENSORLG00015022425	smn1	100	65.493	Oryzias_latipes_hsok
ENSAMXG00000013884	smn1	100	64.437	ENSOMEG00000007824	smn1	100	63.732	Oryzias_melastigma
ENSAMXG00000013884	smn1	92	45.149	ENSOGAG00000031414	-	50	45.695	Otolemur_garnettii
ENSAMXG00000013884	smn1	97	47.719	ENSOARG00000005425	-	53	51.034	Ovis_aries
ENSAMXG00000013884	smn1	97	48.944	ENSPPAG00000036640	-	54	57.746	Pan_paniscus
ENSAMXG00000013884	smn1	97	49.458	ENSPPRG00000005575	-	55	57.042	Panthera_pardus
ENSAMXG00000013884	smn1	97	47.887	ENSPTIG00000007745	-	55	57.042	Panthera_tigris_altaica
ENSAMXG00000013884	smn1	97	49.265	ENSPTRG00000016955	-	54	57.746	Pan_troglodytes
ENSAMXG00000013884	smn1	97	45.091	ENSPANG00000000253	-	52	54.225	Papio_anubis
ENSAMXG00000013884	smn1	97	48.375	ENSPANG00000013601	-	54	57.746	Papio_anubis
ENSAMXG00000013884	smn1	100	61.484	ENSPKIG00000011096	smn1	100	62.989	Paramormyrops_kingsleyae
ENSAMXG00000013884	smn1	99	58.042	ENSPMGG00000012285	smn1	99	56.071	Periophthalmus_magnuspinnatus
ENSAMXG00000013884	smn1	100	64.460	ENSPFOG00000007786	smn1	100	61.972	Poecilia_formosa
ENSAMXG00000013884	smn1	100	64.808	ENSPLAG00000012071	smn1	100	62.324	Poecilia_latipinna
ENSAMXG00000013884	smn1	100	64.460	ENSPMEG00000017085	smn1	100	61.972	Poecilia_mexicana
ENSAMXG00000013884	smn1	100	65.845	ENSPREG00000005824	smn1	100	62.676	Poecilia_reticulata
ENSAMXG00000013884	smn1	61	73.077	ENSPPYG00000019189	-	59	45.690	Pongo_abelii
ENSAMXG00000013884	smn1	91	51.292	ENSPCAG00000004187	-	97	50.000	Procavia_capensis
ENSAMXG00000013884	smn1	62	49.714	ENSPCOG00000022307	-	57	57.143	Propithecus_coquereli
ENSAMXG00000013884	smn1	100	66.901	ENSPNYG00000014148	smn1	100	65.724	Pundamilia_nyererei
ENSAMXG00000013884	smn1	100	89.568	ENSPNAG00000014007	smn1	87	89.568	Pygocentrus_nattereri
ENSAMXG00000013884	smn1	97	48.736	ENSRBIG00000037052	-	54	57.746	Rhinopithecus_bieti
ENSAMXG00000013884	smn1	92	48.077	ENSRBIG00000036775	-	89	45.312	Rhinopithecus_bieti
ENSAMXG00000013884	smn1	97	48.736	ENSRROG00000039399	-	54	57.746	Rhinopithecus_roxellana
ENSAMXG00000013884	smn1	97	47.810	ENSRROG00000031088	-	93	44.074	Rhinopithecus_roxellana
ENSAMXG00000013884	smn1	97	48.162	ENSSBOG00000011665	-	54	57.746	Saimiri_boliviensis_boliviensis
ENSAMXG00000013884	smn1	100	66.667	ENSSFOG00015015507	smn1	100	65.248	Scleropages_formosus
ENSAMXG00000013884	smn1	100	63.066	ENSSMAG00000007922	smn1	100	63.732	Scophthalmus_maximus
ENSAMXG00000013884	smn1	100	67.368	ENSSDUG00000018533	smn1	100	65.385	Seriola_dumerili
ENSAMXG00000013884	smn1	100	67.719	ENSSLDG00000021135	smn1	100	65.734	Seriola_lalandi_dorsalis
ENSAMXG00000013884	smn1	99	56.738	ENSSPUG00000000373	-	53	64.138	Sphenodon_punctatus
ENSAMXG00000013884	smn1	100	65.263	ENSSPAG00000004345	smn1	100	64.211	Stegastes_partitus
ENSAMXG00000013884	smn1	97	40.000	ENSSSCG00000029127	-	71	62.500	Sus_scrofa
ENSAMXG00000013884	smn1	97	47.569	ENSSSCG00000016970	-	94	47.423	Sus_scrofa
ENSAMXG00000013884	smn1	100	58.657	ENSTRUG00000000736	smn	100	53.381	Takifugu_rubripes
ENSAMXG00000013884	smn1	97	58.065	ENSTNIG00000009892	smn1	100	55.749	Tetraodon_nigroviridis
ENSAMXG00000013884	smn1	55	56.051	ENSTBEG00000002399	-	68	57.857	Tupaia_belangeri
ENSAMXG00000013884	smn1	55	55.769	ENSUAMG00000024947	-	51	53.191	Ursus_americanus
ENSAMXG00000013884	smn1	92	46.538	ENSVPAG00000009887	-	60	80.000	Vicugna_pacos
ENSAMXG00000013884	smn1	99	57.857	ENSXETG00000018189	smn2	95	52.708	Xenopus_tropicalis
ENSAMXG00000013884	smn1	87	32.308	ENSXETG00000004912	-	56	58.621	Xenopus_tropicalis
ENSAMXG00000013884	smn1	100	64.789	ENSXMAG00000001521	smn1	100	64.437	Xiphophorus_maculatus