EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000014024 (Gene tree)
Gene ID: 103028334
Gene Symbol: si:ch211-263k4.2
Alias: -
Full Name: PR/SET domain 16
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 306527 bases
Position: chr6:40765456-41071982
Accession: 103028334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	1	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	2	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	3	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	4	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	5	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	6	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	7	8
ENSAMXP00000050741	zf-C2H2	PF00096.26	2.1e-49	8	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	1	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	2	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	3	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	4	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	5	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	6	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	7	8
ENSAMXP00000048886	zf-C2H2	PF00096.26	2.6e-49	8	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	1	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	2	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	3	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	4	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	5	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	6	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	7	8
ENSAMXP00000032061	zf-C2H2	PF00096.26	2.7e-49	8	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	1	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	2	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	3	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	4	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	5	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	6	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	7	8
ENSAMXP00000014428	zf-C2H2	PF00096.26	6.5e-49	8	8
ENSAMXP00000050741	zf-met	PF12874.7	1.3e-05	1	2
ENSAMXP00000050741	zf-met	PF12874.7	1.3e-05	2	2
ENSAMXP00000048886	zf-met	PF12874.7	1.5e-05	1	2
ENSAMXP00000048886	zf-met	PF12874.7	1.5e-05	2	2
ENSAMXP00000032061	zf-met	PF12874.7	1.6e-05	1	2
ENSAMXP00000032061	zf-met	PF12874.7	1.6e-05	2	2
ENSAMXP00000014428	zf-met	PF12874.7	3.4e-05	1	2
ENSAMXP00000014428	zf-met	PF12874.7	3.4e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034586	-	3531	-	ENSAMXP00000050741	1176 (aa)	-	-
ENSAMXT00000057621	-	3615	XM_022670694	ENSAMXP00000032061	1204 (aa)	XP_022526415	-
ENSAMXT00000055177	-	3591	-	ENSAMXP00000048886	1196 (aa)	-	-
ENSAMXT00000014428	-	3909	XM_022670688	ENSAMXP00000014428	1302 (aa)	XP_022526409	W5L3L6

Gene Model

Click here to download ENSAMXG00000014024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000014024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000014024	si:ch211-263k4.2	78	89.270	ENSDARG00000078324	si:ch211-263k4.2	100	89.270	Danio_rerio
ENSAMXG00000014024	si:ch211-263k4.2	100	91.388	ENSIPUG00000020607	prdm16	100	91.208	Ictalurus_punctatus
ENSAMXG00000014024	si:ch211-263k4.2	100	78.951	ENSLOCG00000005336	si:ch211-263k4.2	100	79.897	Lepisosteus_oculatus
ENSAMXG00000014024	si:ch211-263k4.2	99	80.051	ENSPKIG00000013811	si:ch211-263k4.2	99	79.866	Paramormyrops_kingsleyae
ENSAMXG00000014024	si:ch211-263k4.2	100	96.678	ENSPNAG00000027070	si:ch211-263k4.2	100	96.678	Pygocentrus_nattereri
ENSAMXG00000014024	si:ch211-263k4.2	98	76.506	ENSSFOG00015010518	si:ch211-263k4.2	100	75.408	Scleropages_formosus