EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000014194 (Gene tree)
Gene ID: 103032393
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 11039 bases
Position: chr24:6393575-6404613
Accession: 103032393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000014602	Clp1	PF06807.14	4.6e-29	1	1
ENSAMXP00000028627	Clp1	PF06807.14	4.9e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000055814	-	1621	XM_007235303	ENSAMXP00000028627	445 (aa)	XP_007235365	UPI0003CD55F4
ENSAMXT00000014602	-	1296	-	ENSAMXP00000014602	431 (aa)	-	W5L440

Gene Model

Click here to download ENSAMXG00000014194's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000014194's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000014194	clp1	98	78.860	ENSG00000172409	CLP1	97	78.860	Homo_sapiens
ENSAMXG00000014194	clp1	98	88.443	ENSAPOG00000008242	clp1	95	88.443	Acanthochromis_polyacanthus
ENSAMXG00000014194	clp1	98	78.860	ENSAMEG00000014551	CLP1	95	78.860	Ailuropoda_melanoleuca
ENSAMXG00000014194	clp1	98	88.443	ENSACIG00000006310	clp1	95	88.443	Amphilophus_citrinellus
ENSAMXG00000014194	clp1	100	87.097	ENSAOCG00000010681	clp1	100	87.097	Amphiprion_ocellaris
ENSAMXG00000014194	clp1	98	88.443	ENSAPEG00000012165	clp1	98	88.443	Amphiprion_percula
ENSAMXG00000014194	clp1	98	87.500	ENSATEG00000012374	clp1	95	87.500	Anabas_testudineus
ENSAMXG00000014194	clp1	99	77.700	ENSACAG00000007139	CLP1	98	77.700	Anolis_carolinensis
ENSAMXG00000014194	clp1	98	78.860	ENSANAG00000034935	CLP1	97	78.860	Aotus_nancymaae
ENSAMXG00000014194	clp1	98	87.972	ENSACLG00000013573	clp1	95	87.972	Astatotilapia_calliptera
ENSAMXG00000014194	clp1	98	78.860	ENSBTAG00000006493	CLP1	97	78.860	Bos_taurus
ENSAMXG00000014194	clp1	96	46.556	WBGene00010304	clpf-1	96	46.556	Caenorhabditis_elegans
ENSAMXG00000014194	clp1	98	78.860	ENSCJAG00000008748	CLP1	97	78.860	Callithrix_jacchus
ENSAMXG00000014194	clp1	98	78.860	ENSCAFG00000007815	CLP1	97	78.860	Canis_familiaris
ENSAMXG00000014194	clp1	98	78.860	ENSCAFG00020000903	CLP1	97	78.860	Canis_lupus_dingo
ENSAMXG00000014194	clp1	98	78.860	ENSCHIG00000023497	CLP1	97	78.860	Capra_hircus
ENSAMXG00000014194	clp1	98	78.622	ENSTSYG00000006824	CLP1	96	78.622	Carlito_syrichta
ENSAMXG00000014194	clp1	98	78.622	ENSCAPG00000009703	CLP1	97	78.622	Cavia_aperea
ENSAMXG00000014194	clp1	98	78.622	ENSCPOG00000012554	CLP1	99	78.622	Cavia_porcellus
ENSAMXG00000014194	clp1	98	78.622	ENSCCAG00000031957	CLP1	97	78.622	Cebus_capucinus
ENSAMXG00000014194	clp1	98	78.860	ENSCATG00000044628	CLP1	97	78.860	Cercocebus_atys
ENSAMXG00000014194	clp1	98	78.622	ENSCLAG00000004094	CLP1	97	78.622	Chinchilla_lanigera
ENSAMXG00000014194	clp1	98	78.860	ENSCSAG00000005994	CLP1	97	78.860	Chlorocebus_sabaeus
ENSAMXG00000014194	clp1	98	79.097	ENSCPBG00000016843	CLP1	97	79.286	Chrysemys_picta_bellii
ENSAMXG00000014194	clp1	99	60.000	ENSCING00000003779	-	96	61.814	Ciona_intestinalis
ENSAMXG00000014194	clp1	97	61.244	ENSCSAVG00000003437	-	96	61.244	Ciona_savignyi
ENSAMXG00000014194	clp1	98	78.860	ENSCANG00000034335	CLP1	97	78.860	Colobus_angolensis_palliatus
ENSAMXG00000014194	clp1	100	77.367	ENSCGRG00001002227	CLP1	100	77.367	Cricetulus_griseus_chok1gshd
ENSAMXG00000014194	clp1	100	77.367	ENSCGRG00000004328	CLP1	100	77.367	Cricetulus_griseus_crigri
ENSAMXG00000014194	clp1	98	85.377	ENSCSEG00000008614	clp1	95	85.579	Cynoglossus_semilaevis
ENSAMXG00000014194	clp1	98	86.792	ENSCVAG00000020101	clp1	95	86.792	Cyprinodon_variegatus
ENSAMXG00000014194	clp1	98	93.824	ENSDARG00000063663	clp1	100	91.236	Danio_rerio
ENSAMXG00000014194	clp1	97	79.286	ENSDNOG00000042415	CLP1	87	79.286	Dasypus_novemcinctus
ENSAMXG00000014194	clp1	99	77.907	ENSDORG00000014685	Clp1	99	77.907	Dipodomys_ordii
ENSAMXG00000014194	clp1	97	54.265	FBgn0033842	cbc	97	54.265	Drosophila_melanogaster
ENSAMXG00000014194	clp1	98	78.622	ENSETEG00000003009	CLP1	97	78.622	Echinops_telfairi
ENSAMXG00000014194	clp1	97	67.696	ENSEBUG00000011648	clp1	97	67.696	Eptatretus_burgeri
ENSAMXG00000014194	clp1	98	78.860	ENSEASG00005002093	CLP1	97	78.860	Equus_asinus_asinus
ENSAMXG00000014194	clp1	98	78.860	ENSECAG00000011597	CLP1	97	78.860	Equus_caballus
ENSAMXG00000014194	clp1	98	78.622	ENSEEUG00000012771	CLP1	97	78.622	Erinaceus_europaeus
ENSAMXG00000014194	clp1	98	90.974	ENSELUG00000024048	clp1	95	90.974	Esox_lucius
ENSAMXG00000014194	clp1	98	78.860	ENSFCAG00000006633	CLP1	97	78.860	Felis_catus
ENSAMXG00000014194	clp1	97	78.810	ENSFALG00000011145	CLP1	97	78.810	Ficedula_albicollis
ENSAMXG00000014194	clp1	98	78.622	ENSFDAG00000000234	CLP1	97	78.622	Fukomys_damarensis
ENSAMXG00000014194	clp1	98	87.264	ENSFHEG00000014760	CLP1	95	87.264	Fundulus_heteroclitus
ENSAMXG00000014194	clp1	98	92.399	ENSGMOG00000019340	clp1	100	89.438	Gadus_morhua
ENSAMXG00000014194	clp1	98	79.097	ENSGALG00000007370	CLP1	97	79.286	Gallus_gallus
ENSAMXG00000014194	clp1	98	87.264	ENSGAFG00000003020	clp1	97	87.264	Gambusia_affinis
ENSAMXG00000014194	clp1	98	87.736	ENSGACG00000017832	clp1	95	87.736	Gasterosteus_aculeatus
ENSAMXG00000014194	clp1	97	79.286	ENSGAGG00000013279	CLP1	97	79.286	Gopherus_agassizii
ENSAMXG00000014194	clp1	98	78.860	ENSGGOG00000023006	CLP1	97	78.860	Gorilla_gorilla
ENSAMXG00000014194	clp1	98	88.208	ENSHBUG00000010436	clp1	95	88.208	Haplochromis_burtoni
ENSAMXG00000014194	clp1	98	78.622	ENSHGLG00000009914	CLP1	97	78.622	Heterocephalus_glaber_female
ENSAMXG00000014194	clp1	98	78.622	ENSHGLG00100006105	CLP1	97	78.622	Heterocephalus_glaber_male
ENSAMXG00000014194	clp1	98	87.972	ENSHCOG00000010072	clp1	95	87.972	Hippocampus_comes
ENSAMXG00000014194	clp1	100	92.825	ENSIPUG00000016238	clp1	94	95.000	Ictalurus_punctatus
ENSAMXG00000014194	clp1	98	79.097	ENSSTOG00000029257	CLP1	97	79.097	Ictidomys_tridecemlineatus
ENSAMXG00000014194	clp1	98	78.622	ENSJJAG00000023691	Clp1	97	78.622	Jaculus_jaculus
ENSAMXG00000014194	clp1	99	85.880	ENSKMAG00000011990	clp1	97	85.880	Kryptolebias_marmoratus
ENSAMXG00000014194	clp1	98	87.972	ENSLBEG00000010201	clp1	95	87.972	Labrus_bergylta
ENSAMXG00000014194	clp1	98	76.777	ENSLACG00000003160	CLP1	98	76.777	Latimeria_chalumnae
ENSAMXG00000014194	clp1	74	88.199	ENSLOCG00000008074	clp1	100	88.199	Lepisosteus_oculatus
ENSAMXG00000014194	clp1	98	78.385	ENSLAFG00000014907	CLP1	97	78.385	Loxodonta_africana
ENSAMXG00000014194	clp1	98	78.860	ENSMFAG00000046074	CLP1	97	78.860	Macaca_fascicularis
ENSAMXG00000014194	clp1	98	78.860	ENSMMUG00000038007	CLP1	96	78.860	Macaca_mulatta
ENSAMXG00000014194	clp1	98	78.860	ENSMNEG00000000259	CLP1	97	78.860	Macaca_nemestrina
ENSAMXG00000014194	clp1	98	78.860	ENSMLEG00000043556	CLP1	97	78.860	Mandrillus_leucophaeus
ENSAMXG00000014194	clp1	98	88.443	ENSMAMG00000002149	clp1	95	88.443	Mastacembelus_armatus
ENSAMXG00000014194	clp1	98	87.972	ENSMZEG00005002850	clp1	95	87.972	Maylandia_zebra
ENSAMXG00000014194	clp1	98	79.097	ENSMGAG00000009643	CLP1	97	79.286	Meleagris_gallopavo
ENSAMXG00000014194	clp1	100	77.367	ENSMAUG00000016261	Clp1	100	77.367	Mesocricetus_auratus
ENSAMXG00000014194	clp1	98	78.860	ENSMICG00000004895	CLP1	97	78.860	Microcebus_murinus
ENSAMXG00000014194	clp1	100	77.598	ENSMOCG00000005498	Clp1	100	77.598	Microtus_ochrogaster
ENSAMXG00000014194	clp1	98	87.500	ENSMMOG00000003229	clp1	95	87.500	Mola_mola
ENSAMXG00000014194	clp1	99	77.855	ENSMODG00000024148	-	99	77.855	Monodelphis_domestica
ENSAMXG00000014194	clp1	99	77.855	ENSMODG00000020107	-	99	77.855	Monodelphis_domestica
ENSAMXG00000014194	clp1	98	88.679	ENSMALG00000014239	clp1	95	88.679	Monopterus_albus
ENSAMXG00000014194	clp1	100	77.367	MGP_CAROLIEiJ_G0023726	Clp1	100	77.367	Mus_caroli
ENSAMXG00000014194	clp1	100	77.367	ENSMUSG00000027079	Clp1	100	77.367	Mus_musculus
ENSAMXG00000014194	clp1	100	77.598	MGP_PahariEiJ_G0025177	Clp1	100	77.598	Mus_pahari
ENSAMXG00000014194	clp1	100	77.367	MGP_SPRETEiJ_G0024646	Clp1	100	77.367	Mus_spretus
ENSAMXG00000014194	clp1	98	78.860	ENSMPUG00000000268	CLP1	97	78.860	Mustela_putorius_furo
ENSAMXG00000014194	clp1	98	78.860	ENSMLUG00000007904	CLP1	97	78.860	Myotis_lucifugus
ENSAMXG00000014194	clp1	98	78.622	ENSNGAG00000006165	Clp1	97	78.622	Nannospalax_galili
ENSAMXG00000014194	clp1	98	88.208	ENSNBRG00000005225	clp1	95	88.208	Neolamprologus_brichardi
ENSAMXG00000014194	clp1	80	71.705	ENSNLEG00000012809	-	96	72.619	Nomascus_leucogenys
ENSAMXG00000014194	clp1	99	77.855	ENSMEUG00000010949	CLP1	99	77.855	Notamacropus_eugenii
ENSAMXG00000014194	clp1	71	79.739	ENSOPRG00000007329	CLP1	100	79.739	Ochotona_princeps
ENSAMXG00000014194	clp1	98	78.622	ENSODEG00000011410	CLP1	97	78.622	Octodon_degus
ENSAMXG00000014194	clp1	98	88.208	ENSONIG00000005089	clp1	95	88.208	Oreochromis_niloticus
ENSAMXG00000014194	clp1	98	79.097	ENSOCUG00000007045	CLP1	97	79.097	Oryctolagus_cuniculus
ENSAMXG00000014194	clp1	98	86.557	ENSORLG00000003647	clp1	95	86.557	Oryzias_latipes
ENSAMXG00000014194	clp1	98	86.321	ENSORLG00020016676	clp1	95	86.321	Oryzias_latipes_hni
ENSAMXG00000014194	clp1	98	86.557	ENSORLG00015019484	clp1	95	86.557	Oryzias_latipes_hsok
ENSAMXG00000014194	clp1	98	87.500	ENSOMEG00000021303	clp1	95	87.500	Oryzias_melastigma
ENSAMXG00000014194	clp1	98	78.860	ENSOGAG00000004508	CLP1	97	78.860	Otolemur_garnettii
ENSAMXG00000014194	clp1	98	77.672	ENSOARG00000010145	CLP1	96	77.672	Ovis_aries
ENSAMXG00000014194	clp1	98	78.860	ENSPPAG00000041519	CLP1	97	78.860	Pan_paniscus
ENSAMXG00000014194	clp1	98	78.860	ENSPPRG00000006135	CLP1	97	78.860	Panthera_pardus
ENSAMXG00000014194	clp1	98	78.860	ENSPTIG00000015866	CLP1	97	78.860	Panthera_tigris_altaica
ENSAMXG00000014194	clp1	98	78.860	ENSPTRG00000047318	CLP1	97	78.860	Pan_troglodytes
ENSAMXG00000014194	clp1	98	78.860	ENSPANG00000017078	CLP1	95	78.860	Papio_anubis
ENSAMXG00000014194	clp1	100	89.755	ENSPKIG00000007697	clp1	100	89.755	Paramormyrops_kingsleyae
ENSAMXG00000014194	clp1	92	76.322	ENSPSIG00000005468	CLP1	97	76.322	Pelodiscus_sinensis
ENSAMXG00000014194	clp1	98	86.321	ENSPMGG00000012171	clp1	100	83.705	Periophthalmus_magnuspinnatus
ENSAMXG00000014194	clp1	100	77.598	ENSPEMG00000011213	-	100	77.598	Peromyscus_maniculatus_bairdii
ENSAMXG00000014194	clp1	97	68.646	ENSPMAG00000006707	clp1	97	68.646	Petromyzon_marinus
ENSAMXG00000014194	clp1	99	78.089	ENSPCIG00000011899	CLP1	99	78.089	Phascolarctos_cinereus
ENSAMXG00000014194	clp1	97	87.707	ENSPFOG00000008169	clp1	95	87.707	Poecilia_formosa
ENSAMXG00000014194	clp1	97	87.707	ENSPLAG00000022388	clp1	97	87.707	Poecilia_latipinna
ENSAMXG00000014194	clp1	97	87.707	ENSPMEG00000021088	clp1	97	87.707	Poecilia_mexicana
ENSAMXG00000014194	clp1	98	87.500	ENSPREG00000017802	clp1	95	87.500	Poecilia_reticulata
ENSAMXG00000014194	clp1	54	76.293	ENSPPYG00000003266	-	100	76.293	Pongo_abelii
ENSAMXG00000014194	clp1	98	78.860	ENSPCOG00000000360	CLP1	96	78.860	Propithecus_coquereli
ENSAMXG00000014194	clp1	98	78.860	ENSPVAG00000016270	CLP1	97	78.860	Pteropus_vampyrus
ENSAMXG00000014194	clp1	98	88.208	ENSPNYG00000017274	clp1	95	88.208	Pundamilia_nyererei
ENSAMXG00000014194	clp1	100	95.730	ENSPNAG00000026460	clp1	100	95.730	Pygocentrus_nattereri
ENSAMXG00000014194	clp1	100	77.367	ENSRNOG00000007416	Clp1	100	77.367	Rattus_norvegicus
ENSAMXG00000014194	clp1	98	78.860	ENSRBIG00000018191	CLP1	97	78.860	Rhinopithecus_bieti
ENSAMXG00000014194	clp1	98	78.860	ENSRROG00000039265	CLP1	97	78.860	Rhinopithecus_roxellana
ENSAMXG00000014194	clp1	96	64.251	ENSSBOG00000010558	-	93	64.251	Saimiri_boliviensis_boliviensis
ENSAMXG00000014194	clp1	98	78.860	ENSSBOG00000032517	-	97	78.860	Saimiri_boliviensis_boliviensis
ENSAMXG00000014194	clp1	99	78.089	ENSSHAG00000015695	CLP1	99	78.089	Sarcophilus_harrisii
ENSAMXG00000014194	clp1	100	87.111	ENSSFOG00015000628	clp1	100	87.111	Scleropages_formosus
ENSAMXG00000014194	clp1	98	87.736	ENSSMAG00000019423	clp1	94	87.943	Scophthalmus_maximus
ENSAMXG00000014194	clp1	98	88.208	ENSSDUG00000014495	clp1	95	88.208	Seriola_dumerili
ENSAMXG00000014194	clp1	98	87.972	ENSSLDG00000000937	clp1	95	87.972	Seriola_lalandi_dorsalis
ENSAMXG00000014194	clp1	54	76.190	ENSSARG00000002459	CLP1	100	76.190	Sorex_araneus
ENSAMXG00000014194	clp1	99	77.700	ENSSPUG00000016811	CLP1	98	77.700	Sphenodon_punctatus
ENSAMXG00000014194	clp1	98	88.208	ENSSPAG00000016052	clp1	95	88.208	Stegastes_partitus
ENSAMXG00000014194	clp1	98	78.860	ENSSSCG00000031442	CLP1	97	78.860	Sus_scrofa
ENSAMXG00000014194	clp1	97	78.810	ENSTGUG00000007002	CLP1	97	78.810	Taeniopygia_guttata
ENSAMXG00000014194	clp1	98	87.264	ENSTRUG00000012602	clp1	95	87.264	Takifugu_rubripes
ENSAMXG00000014194	clp1	98	85.613	ENSTNIG00000013125	clp1	95	85.613	Tetraodon_nigroviridis
ENSAMXG00000014194	clp1	97	78.333	ENSTBEG00000009975	CLP1	97	78.333	Tupaia_belangeri
ENSAMXG00000014194	clp1	98	79.097	ENSTTRG00000002096	CLP1	97	79.097	Tursiops_truncatus
ENSAMXG00000014194	clp1	98	78.860	ENSUAMG00000011388	CLP1	97	78.860	Ursus_americanus
ENSAMXG00000014194	clp1	98	78.860	ENSUMAG00000018317	CLP1	97	78.860	Ursus_maritimus
ENSAMXG00000014194	clp1	98	78.860	ENSVVUG00000017138	CLP1	94	78.860	Vulpes_vulpes
ENSAMXG00000014194	clp1	98	71.971	ENSXETG00000007088	clp1	95	73.397	Xenopus_tropicalis
ENSAMXG00000014194	clp1	98	87.500	ENSXCOG00000002287	clp1	95	87.500	Xiphophorus_couchianus
ENSAMXG00000014194	clp1	98	87.500	ENSXMAG00000009783	clp1	95	87.500	Xiphophorus_maculatus