EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000014483 (Gene tree)
Gene ID: 103038599
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13971 bases
Position: chr3:8590330-8604300
Accession: 103038599
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000014906	POP1	PF06978.11	4.7e-36	1	2
ENSAMXP00000014906	POP1	PF06978.11	4.7e-36	2	2
ENSAMXP00000014906	POPLD	PF08170.12	8.7e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000014906	POP1-201	3479	XM_007234722	ENSAMXP00000014906	998 (aa)	XP_007234784	W5L4Z4

Gene Model

Click here to download ENSAMXG00000014483's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG
amex03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000014483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000014483	POP1	100	45.120	ENSG00000104356	POP1	100	45.772	Homo_sapiens
ENSAMXG00000014483	POP1	100	59.015	ENSAPOG00000008198	pop1	100	59.015	Acanthochromis_polyacanthus
ENSAMXG00000014483	POP1	100	45.580	ENSAMEG00000000556	POP1	100	45.948	Ailuropoda_melanoleuca
ENSAMXG00000014483	POP1	100	56.114	ENSACIG00000004169	POP1	100	56.114	Amphilophus_citrinellus
ENSAMXG00000014483	POP1	100	58.096	ENSAOCG00000010991	pop1	100	58.391	Amphiprion_ocellaris
ENSAMXG00000014483	POP1	100	54.158	ENSAPEG00000007607	pop1	100	54.455	Amphiprion_percula
ENSAMXG00000014483	POP1	100	57.812	ENSATEG00000024814	POP1	100	58.008	Anabas_testudineus
ENSAMXG00000014483	POP1	94	47.470	ENSAPLG00000014418	POP1	99	47.470	Anas_platyrhynchos
ENSAMXG00000014483	POP1	92	46.928	ENSACAG00000016083	POP1	100	44.885	Anolis_carolinensis
ENSAMXG00000014483	POP1	88	53.293	ENSANAG00000026360	POP1	99	53.293	Aotus_nancymaae
ENSAMXG00000014483	POP1	100	57.692	ENSACLG00000010951	pop1	100	57.890	Astatotilapia_calliptera
ENSAMXG00000014483	POP1	100	44.651	ENSBTAG00000012596	POP1	100	46.419	Bos_taurus
ENSAMXG00000014483	POP1	58	31.907	WBGene00015486	C05D11.9	66	31.907	Caenorhabditis_elegans
ENSAMXG00000014483	POP1	91	70.886	ENSCJAG00000015567	POP1	100	46.039	Callithrix_jacchus
ENSAMXG00000014483	POP1	100	47.243	ENSCAFG00000000469	POP1	100	47.243	Canis_familiaris
ENSAMXG00000014483	POP1	100	46.283	ENSCAFG00020026765	POP1	100	46.283	Canis_lupus_dingo
ENSAMXG00000014483	POP1	100	46.611	ENSCHIG00000017066	POP1	100	46.518	Capra_hircus
ENSAMXG00000014483	POP1	100	44.059	ENSTSYG00000003097	POP1	100	46.013	Carlito_syrichta
ENSAMXG00000014483	POP1	99	45.000	ENSCAPG00000007251	POP1	99	45.000	Cavia_aperea
ENSAMXG00000014483	POP1	99	45.961	ENSCPOG00000002901	POP1	99	46.147	Cavia_porcellus
ENSAMXG00000014483	POP1	91	70.886	ENSCCAG00000018939	POP1	100	46.039	Cebus_capucinus
ENSAMXG00000014483	POP1	100	43.330	ENSCATG00000040916	POP1	100	45.312	Cercocebus_atys
ENSAMXG00000014483	POP1	100	46.574	ENSCLAG00000007208	POP1	97	46.574	Chinchilla_lanigera
ENSAMXG00000014483	POP1	92	47.083	ENSCSAG00000012340	POP1	99	47.465	Chlorocebus_sabaeus
ENSAMXG00000014483	POP1	94	43.483	ENSCHOG00000011432	POP1	97	44.831	Choloepus_hoffmanni
ENSAMXG00000014483	POP1	100	46.566	ENSCPBG00000006373	POP1	100	47.712	Chrysemys_picta_bellii
ENSAMXG00000014483	POP1	67	35.743	ENSCING00000008323	-	77	35.743	Ciona_intestinalis
ENSAMXG00000014483	POP1	100	45.138	ENSCANG00000001647	POP1	100	45.463	Colobus_angolensis_palliatus
ENSAMXG00000014483	POP1	100	44.641	ENSCGRG00001017308	Pop1	100	45.116	Cricetulus_griseus_chok1gshd
ENSAMXG00000014483	POP1	100	42.410	ENSCGRG00000010824	Pop1	100	42.762	Cricetulus_griseus_crigri
ENSAMXG00000014483	POP1	100	55.392	ENSCSEG00000008737	POP1	100	55.392	Cynoglossus_semilaevis
ENSAMXG00000014483	POP1	100	56.385	ENSCVAG00000022248	pop1	100	56.680	Cyprinodon_variegatus
ENSAMXG00000014483	POP1	51	55.273	ENSDARG00000102087	pop1	99	55.273	Danio_rerio
ENSAMXG00000014483	POP1	100	43.834	ENSDNOG00000019974	POP1	100	43.834	Dasypus_novemcinctus
ENSAMXG00000014483	POP1	100	40.628	ENSDORG00000015384	Pop1	100	40.720	Dipodomys_ordii
ENSAMXG00000014483	POP1	88	45.656	ENSETEG00000007839	POP1	88	45.656	Echinops_telfairi
ENSAMXG00000014483	POP1	50	43.249	ENSEBUG00000009897	pop1	95	43.249	Eptatretus_burgeri
ENSAMXG00000014483	POP1	100	46.982	ENSEASG00005003189	POP1	98	47.217	Equus_asinus_asinus
ENSAMXG00000014483	POP1	100	47.765	ENSECAG00000024236	POP1	100	48.045	Equus_caballus
ENSAMXG00000014483	POP1	52	75.325	ENSEEUG00000003050	-	54	75.325	Erinaceus_europaeus
ENSAMXG00000014483	POP1	99	59.050	ENSELUG00000003526	pop1	99	59.109	Esox_lucius
ENSAMXG00000014483	POP1	100	46.488	ENSFCAG00000002168	POP1	100	46.488	Felis_catus
ENSAMXG00000014483	POP1	100	45.760	ENSFALG00000005711	POP1	100	46.082	Ficedula_albicollis
ENSAMXG00000014483	POP1	100	45.530	ENSFDAG00000017068	POP1	100	45.714	Fukomys_damarensis
ENSAMXG00000014483	POP1	100	57.438	ENSFHEG00000019518	pop1	100	57.833	Fundulus_heteroclitus
ENSAMXG00000014483	POP1	100	54.089	ENSGMOG00000000659	POP1	100	54.286	Gadus_morhua
ENSAMXG00000014483	POP1	100	55.424	ENSGAFG00000019770	POP1	100	55.424	Gambusia_affinis
ENSAMXG00000014483	POP1	98	60.829	ENSGACG00000003499	pop1	93	61.096	Gasterosteus_aculeatus
ENSAMXG00000014483	POP1	100	47.477	ENSGAGG00000011737	POP1	98	47.814	Gopherus_agassizii
ENSAMXG00000014483	POP1	100	45.170	ENSGGOG00000003176	POP1	100	45.680	Gorilla_gorilla
ENSAMXG00000014483	POP1	100	57.859	ENSHBUG00000021583	pop1	100	57.833	Haplochromis_burtoni
ENSAMXG00000014483	POP1	100	45.129	ENSHGLG00000006029	POP1	100	45.438	Heterocephalus_glaber_female
ENSAMXG00000014483	POP1	100	45.129	ENSHGLG00100016879	POP1	100	45.438	Heterocephalus_glaber_male
ENSAMXG00000014483	POP1	100	52.818	ENSHCOG00000013888	pop1	100	52.818	Hippocampus_comes
ENSAMXG00000014483	POP1	100	65.585	ENSIPUG00000018336	pop1	100	65.585	Ictalurus_punctatus
ENSAMXG00000014483	POP1	100	46.846	ENSSTOG00000011455	POP1	97	46.846	Ictidomys_tridecemlineatus
ENSAMXG00000014483	POP1	100	44.685	ENSJJAG00000013325	Pop1	100	44.685	Jaculus_jaculus
ENSAMXG00000014483	POP1	100	58.696	ENSKMAG00000001346	POP1	100	58.696	Kryptolebias_marmoratus
ENSAMXG00000014483	POP1	100	52.584	ENSLBEG00000024457	POP1	100	52.584	Labrus_bergylta
ENSAMXG00000014483	POP1	95	49.361	ENSLACG00000012498	POP1	99	49.656	Latimeria_chalumnae
ENSAMXG00000014483	POP1	91	76.923	ENSLOCG00000009817	POP1	99	54.391	Lepisosteus_oculatus
ENSAMXG00000014483	POP1	100	46.281	ENSLAFG00000010770	POP1	100	46.961	Loxodonta_africana
ENSAMXG00000014483	POP1	100	45.120	ENSMFAG00000000347	POP1	100	45.513	Macaca_fascicularis
ENSAMXG00000014483	POP1	100	45.161	ENSMNEG00000036870	POP1	100	45.371	Macaca_nemestrina
ENSAMXG00000014483	POP1	100	45.170	ENSMLEG00000034986	POP1	100	45.563	Mandrillus_leucophaeus
ENSAMXG00000014483	POP1	100	56.683	ENSMAMG00000004040	pop1	100	56.796	Mastacembelus_armatus
ENSAMXG00000014483	POP1	100	57.859	ENSMZEG00005025448	pop1	100	57.833	Maylandia_zebra
ENSAMXG00000014483	POP1	100	44.708	ENSMGAG00000012167	POP1	100	45.795	Meleagris_gallopavo
ENSAMXG00000014483	POP1	100	46.211	ENSMAUG00000017537	Pop1	100	46.211	Mesocricetus_auratus
ENSAMXG00000014483	POP1	100	45.906	ENSMICG00000004361	POP1	100	46.090	Microcebus_murinus
ENSAMXG00000014483	POP1	100	43.454	ENSMOCG00000006356	Pop1	100	45.125	Microtus_ochrogaster
ENSAMXG00000014483	POP1	100	53.181	ENSMMOG00000018242	pop1	100	53.181	Mola_mola
ENSAMXG00000014483	POP1	99	43.171	ENSMODG00000006561	POP1	99	45.188	Monodelphis_domestica
ENSAMXG00000014483	POP1	100	56.751	ENSMALG00000012621	POP1	100	56.947	Monopterus_albus
ENSAMXG00000014483	POP1	100	45.188	MGP_CAROLIEiJ_G0019726	Pop1	100	45.471	Mus_caroli
ENSAMXG00000014483	POP1	100	44.455	ENSMUSG00000022325	Pop1	100	45.102	Mus_musculus
ENSAMXG00000014483	POP1	100	45.129	MGP_PahariEiJ_G0019735	Pop1	100	45.598	Mus_pahari
ENSAMXG00000014483	POP1	100	45.005	MGP_SPRETEiJ_G0020622	Pop1	100	45.287	Mus_spretus
ENSAMXG00000014483	POP1	100	46.617	ENSMPUG00000015250	POP1	100	45.856	Mustela_putorius_furo
ENSAMXG00000014483	POP1	100	44.689	ENSMLUG00000010204	POP1	100	43.566	Myotis_lucifugus
ENSAMXG00000014483	POP1	100	45.580	ENSNGAG00000001582	Pop1	100	45.672	Nannospalax_galili
ENSAMXG00000014483	POP1	100	54.089	ENSNBRG00000002356	pop1	100	54.286	Neolamprologus_brichardi
ENSAMXG00000014483	POP1	100	45.170	ENSNLEG00000002541	POP1	100	45.588	Nomascus_leucogenys
ENSAMXG00000014483	POP1	90	55.000	ENSMEUG00000003118	POP1	91	55.000	Notamacropus_eugenii
ENSAMXG00000014483	POP1	100	46.346	ENSOPRG00000007667	POP1	100	46.346	Ochotona_princeps
ENSAMXG00000014483	POP1	100	45.247	ENSODEG00000003984	POP1	100	45.346	Octodon_degus
ENSAMXG00000014483	POP1	100	58.268	ENSONIG00000016445	pop1	100	58.112	Oreochromis_niloticus
ENSAMXG00000014483	POP1	59	46.825	ENSOANG00000001278	-	94	46.825	Ornithorhynchus_anatinus
ENSAMXG00000014483	POP1	100	45.138	ENSOCUG00000017400	POP1	100	45.596	Oryctolagus_cuniculus
ENSAMXG00000014483	POP1	100	55.348	ENSORLG00000002839	pop1	100	56.194	Oryzias_latipes
ENSAMXG00000014483	POP1	100	50.963	ENSORLG00020022450	POP1	100	52.249	Oryzias_latipes_hni
ENSAMXG00000014483	POP1	100	56.342	ENSORLG00015012746	POP1	100	56.735	Oryzias_latipes_hsok
ENSAMXG00000014483	POP1	100	55.294	ENSOMEG00000006915	pop1	99	55.294	Oryzias_melastigma
ENSAMXG00000014483	POP1	100	45.179	ENSOGAG00000001466	POP1	100	45.229	Otolemur_garnettii
ENSAMXG00000014483	POP1	100	45.262	ENSPPAG00000018410	POP1	100	45.914	Pan_paniscus
ENSAMXG00000014483	POP1	100	45.876	ENSPPRG00000005002	POP1	100	45.783	Panthera_pardus
ENSAMXG00000014483	POP1	100	45.706	ENSPTIG00000016527	POP1	100	45.706	Panthera_tigris_altaica
ENSAMXG00000014483	POP1	100	45.028	ENSPTRG00000020458	POP1	100	45.680	Pan_troglodytes
ENSAMXG00000014483	POP1	100	45.354	ENSPANG00000009704	POP1	100	45.837	Papio_anubis
ENSAMXG00000014483	POP1	100	55.199	ENSPKIG00000016325	POP1	100	55.005	Paramormyrops_kingsleyae
ENSAMXG00000014483	POP1	100	46.884	ENSPSIG00000012343	POP1	100	47.407	Pelodiscus_sinensis
ENSAMXG00000014483	POP1	100	51.827	ENSPMGG00000022253	POP1	100	52.212	Periophthalmus_magnuspinnatus
ENSAMXG00000014483	POP1	99	44.891	ENSPEMG00000023633	Pop1	100	44.982	Peromyscus_maniculatus_bairdii
ENSAMXG00000014483	POP1	84	48.837	ENSPMAG00000003209	POP1	100	40.061	Petromyzon_marinus
ENSAMXG00000014483	POP1	99	44.455	ENSPCIG00000012216	POP1	99	44.546	Phascolarctos_cinereus
ENSAMXG00000014483	POP1	100	55.479	ENSPFOG00000012490	POP1	100	55.479	Poecilia_formosa
ENSAMXG00000014483	POP1	100	56.028	ENSPLAG00000004646	POP1	100	56.028	Poecilia_latipinna
ENSAMXG00000014483	POP1	100	55.786	ENSPMEG00000019592	POP1	100	55.786	Poecilia_mexicana
ENSAMXG00000014483	POP1	100	55.807	ENSPREG00000020951	POP1	100	55.807	Poecilia_reticulata
ENSAMXG00000014483	POP1	100	45.413	ENSPPYG00000018777	POP1	100	45.830	Pongo_abelii
ENSAMXG00000014483	POP1	100	43.848	ENSPCAG00000016662	POP1	100	43.848	Procavia_capensis
ENSAMXG00000014483	POP1	100	45.596	ENSPCOG00000019420	POP1	100	45.872	Propithecus_coquereli
ENSAMXG00000014483	POP1	100	45.276	ENSPVAG00000014468	POP1	100	45.557	Pteropus_vampyrus
ENSAMXG00000014483	POP1	100	55.423	ENSPNYG00000004476	pop1	100	55.721	Pundamilia_nyererei
ENSAMXG00000014483	POP1	100	70.524	ENSPNAG00000000265	pop1	100	70.524	Pygocentrus_nattereri
ENSAMXG00000014483	POP1	100	44.280	ENSRNOG00000005243	Pop1	100	44.516	Rattus_norvegicus
ENSAMXG00000014483	POP1	100	45.672	ENSRBIG00000007996	POP1	100	45.538	Rhinopithecus_bieti
ENSAMXG00000014483	POP1	100	45.672	ENSRROG00000012334	POP1	100	45.630	Rhinopithecus_roxellana
ENSAMXG00000014483	POP1	99	44.403	ENSSBOG00000020830	POP1	100	44.734	Saimiri_boliviensis_boliviensis
ENSAMXG00000014483	POP1	99	45.730	ENSSHAG00000000296	POP1	99	45.730	Sarcophilus_harrisii
ENSAMXG00000014483	POP1	100	57.030	ENSSFOG00015007429	pop1	99	57.030	Scleropages_formosus
ENSAMXG00000014483	POP1	100	57.299	ENSSMAG00000010467	POP1	100	57.455	Scophthalmus_maximus
ENSAMXG00000014483	POP1	100	57.715	ENSSDUG00000007817	POP1	100	57.992	Seriola_dumerili
ENSAMXG00000014483	POP1	100	57.520	ENSSLDG00000012565	POP1	100	57.797	Seriola_lalandi_dorsalis
ENSAMXG00000014483	POP1	100	45.089	ENSSPUG00000003550	-	100	45.557	Sphenodon_punctatus
ENSAMXG00000014483	POP1	94	62.222	ENSSPAG00000014955	pop1	100	62.222	Stegastes_partitus
ENSAMXG00000014483	POP1	100	45.463	ENSSSCG00000006078	POP1	100	45.931	Sus_scrofa
ENSAMXG00000014483	POP1	93	42.641	ENSTGUG00000012011	-	99	42.742	Taeniopygia_guttata
ENSAMXG00000014483	POP1	100	55.064	ENSTRUG00000010856	pop1	100	55.064	Takifugu_rubripes
ENSAMXG00000014483	POP1	94	56.926	ENSTNIG00000013297	pop1	98	56.926	Tetraodon_nigroviridis
ENSAMXG00000014483	POP1	92	45.158	ENSTBEG00000014214	POP1	95	45.519	Tupaia_belangeri
ENSAMXG00000014483	POP1	100	43.030	ENSTTRG00000016071	POP1	100	44.837	Tursiops_truncatus
ENSAMXG00000014483	POP1	99	46.374	ENSUAMG00000017309	POP1	100	46.756	Ursus_americanus
ENSAMXG00000014483	POP1	100	45.722	ENSUMAG00000016952	POP1	100	53.150	Ursus_maritimus
ENSAMXG00000014483	POP1	87	51.957	ENSVPAG00000008278	POP1	82	51.957	Vicugna_pacos
ENSAMXG00000014483	POP1	100	45.818	ENSVVUG00000010994	POP1	100	45.818	Vulpes_vulpes
ENSAMXG00000014483	POP1	100	48.502	ENSXCOG00000017043	POP1	100	48.733	Xiphophorus_couchianus
ENSAMXG00000014483	POP1	100	55.030	ENSXMAG00000002472	POP1	100	55.030	Xiphophorus_maculatus