EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000015309 (Gene tree)
Gene ID: 103026318
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10533 bases
Position: chr11:5151072-5161604
Accession: 103026318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000015760	zf-U11-48K	PF05253.12	6.4e-07	1	1
ENSAMXP00000034954	zf-U11-48K	PF05253.12	6.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000015760	-	981	-	ENSAMXP00000015760	326 (aa)	-	W5L7E8
ENSAMXT00000048341	-	2499	XM_007228853	ENSAMXP00000034954	332 (aa)	XP_007228915	UPI000BBDF240

Gene Model

Click here to download ENSAMXG00000015309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000015309's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000015309	snrnp48	85	48.264	ENSG00000168566	SNRNP48	94	45.846	Homo_sapiens
ENSAMXG00000015309	snrnp48	97	58.333	ENSAPOG00000021430	snrnp48	94	58.438	Acanthochromis_polyacanthus
ENSAMXG00000015309	snrnp48	97	44.253	ENSAMEG00000017349	SNRNP48	91	45.597	Ailuropoda_melanoleuca
ENSAMXG00000015309	snrnp48	90	56.376	ENSACIG00000002032	snrnp48	94	54.545	Amphilophus_citrinellus
ENSAMXG00000015309	snrnp48	97	58.333	ENSAOCG00000010562	snrnp48	94	58.438	Amphiprion_ocellaris
ENSAMXG00000015309	snrnp48	97	58.204	ENSAPEG00000003231	snrnp48	94	58.307	Amphiprion_percula
ENSAMXG00000015309	snrnp48	95	59.062	ENSATEG00000020210	snrnp48	95	58.750	Anabas_testudineus
ENSAMXG00000015309	snrnp48	88	47.697	ENSACAG00000002811	SNRNP48	87	48.057	Anolis_carolinensis
ENSAMXG00000015309	snrnp48	85	47.387	ENSANAG00000033538	SNRNP48	94	45.062	Aotus_nancymaae
ENSAMXG00000015309	snrnp48	93	45.152	ENSBTAG00000001123	SNRNP48	92	46.605	Bos_taurus
ENSAMXG00000015309	snrnp48	85	47.735	ENSCJAG00000021330	SNRNP48	94	45.679	Callithrix_jacchus
ENSAMXG00000015309	snrnp48	97	44.058	ENSCAFG00000009574	SNRNP48	77	45.794	Canis_familiaris
ENSAMXG00000015309	snrnp48	99	44.160	ENSCAFG00020013203	SNRNP48	92	45.794	Canis_lupus_dingo
ENSAMXG00000015309	snrnp48	93	45.152	ENSCHIG00000015216	SNRNP48	91	46.855	Capra_hircus
ENSAMXG00000015309	snrnp48	83	46.290	ENSTSYG00000000698	SNRNP48	92	43.750	Carlito_syrichta
ENSAMXG00000015309	snrnp48	89	43.831	ENSCAPG00000006768	SNRNP48	93	44.637	Cavia_aperea
ENSAMXG00000015309	snrnp48	97	44.083	ENSCPOG00000007910	SNRNP48	94	44.860	Cavia_porcellus
ENSAMXG00000015309	snrnp48	85	47.038	ENSCCAG00000035652	SNRNP48	94	44.753	Cebus_capucinus
ENSAMXG00000015309	snrnp48	85	47.038	ENSCATG00000033947	SNRNP48	94	44.753	Cercocebus_atys
ENSAMXG00000015309	snrnp48	84	47.183	ENSCLAG00000003765	SNRNP48	93	45.141	Chinchilla_lanigera
ENSAMXG00000015309	snrnp48	85	47.735	ENSCSAG00000007409	SNRNP48	94	45.370	Chlorocebus_sabaeus
ENSAMXG00000015309	snrnp48	88	48.693	ENSCPBG00000019146	SNRNP48	88	50.355	Chrysemys_picta_bellii
ENSAMXG00000015309	snrnp48	85	47.387	ENSCANG00000030017	SNRNP48	94	45.062	Colobus_angolensis_palliatus
ENSAMXG00000015309	snrnp48	97	44.118	ENSCGRG00001001076	-	93	45.652	Cricetulus_griseus_chok1gshd
ENSAMXG00000015309	snrnp48	92	38.019	ENSCGRG00001008805	-	89	38.019	Cricetulus_griseus_chok1gshd
ENSAMXG00000015309	snrnp48	97	44.118	ENSCGRG00000007781	Snrnp48	93	45.652	Cricetulus_griseus_crigri
ENSAMXG00000015309	snrnp48	77	60.236	ENSCSEG00000000722	snrnp48	87	55.484	Cynoglossus_semilaevis
ENSAMXG00000015309	snrnp48	89	55.556	ENSCVAG00000019829	snrnp48	79	57.143	Cyprinodon_variegatus
ENSAMXG00000015309	snrnp48	93	59.248	ENSDARG00000039989	snrnp48	93	59.813	Danio_rerio
ENSAMXG00000015309	snrnp48	84	47.552	ENSDNOG00000014978	SNRNP48	91	44.969	Dasypus_novemcinctus
ENSAMXG00000015309	snrnp48	98	42.773	ENSDORG00000015140	Snrnp48	92	44.062	Dipodomys_ordii
ENSAMXG00000015309	snrnp48	85	47.222	ENSEASG00005012021	SNRNP48	94	44.923	Equus_asinus_asinus
ENSAMXG00000015309	snrnp48	85	47.569	ENSECAG00000026937	SNRNP48	94	45.231	Equus_caballus
ENSAMXG00000015309	snrnp48	97	31.471	ENSEEUG00000015437	SNRNP48	95	30.887	Erinaceus_europaeus
ENSAMXG00000015309	snrnp48	91	60.261	ENSELUG00000009766	snrnp48	94	57.612	Esox_lucius
ENSAMXG00000015309	snrnp48	85	47.569	ENSFCAG00000018853	SNRNP48	94	45.231	Felis_catus
ENSAMXG00000015309	snrnp48	78	51.351	ENSFALG00000007797	SNRNP48	90	49.129	Ficedula_albicollis
ENSAMXG00000015309	snrnp48	98	45.349	ENSFDAG00000009231	SNRNP48	94	46.319	Fukomys_damarensis
ENSAMXG00000015309	snrnp48	63	67.647	ENSFHEG00000014647	snrnp48	93	58.456	Fundulus_heteroclitus
ENSAMXG00000015309	snrnp48	74	61.983	ENSGMOG00000018599	-	97	54.167	Gadus_morhua
ENSAMXG00000015309	snrnp48	86	49.653	ENSGALG00000013005	SNRNP48	93	50.542	Gallus_gallus
ENSAMXG00000015309	snrnp48	78	65.134	ENSGAFG00000021639	snrnp48	94	56.881	Gambusia_affinis
ENSAMXG00000015309	snrnp48	74	62.449	ENSGACG00000017756	-	97	54.242	Gasterosteus_aculeatus
ENSAMXG00000015309	snrnp48	88	47.557	ENSGAGG00000000865	SNRNP48	92	49.825	Gopherus_agassizii
ENSAMXG00000015309	snrnp48	85	47.735	ENSGGOG00000013220	SNRNP48	94	45.370	Gorilla_gorilla
ENSAMXG00000015309	snrnp48	95	58.307	ENSHBUG00000017066	snrnp48	93	57.632	Haplochromis_burtoni
ENSAMXG00000015309	snrnp48	85	46.181	ENSHGLG00000015241	SNRNP48	94	44.615	Heterocephalus_glaber_female
ENSAMXG00000015309	snrnp48	85	46.181	ENSHGLG00100010027	SNRNP48	94	44.615	Heterocephalus_glaber_male
ENSAMXG00000015309	snrnp48	77	59.843	ENSHCOG00000014066	snrnp48	94	54.407	Hippocampus_comes
ENSAMXG00000015309	snrnp48	85	48.611	ENSSTOG00000014635	SNRNP48	94	46.462	Ictidomys_tridecemlineatus
ENSAMXG00000015309	snrnp48	86	46.075	ENSJJAG00000011495	Snrnp48	95	43.902	Jaculus_jaculus
ENSAMXG00000015309	snrnp48	94	57.321	ENSKMAG00000016514	snrnp48	91	58.147	Kryptolebias_marmoratus
ENSAMXG00000015309	snrnp48	79	62.835	ENSLBEG00000026249	snrnp48	93	57.053	Labrus_bergylta
ENSAMXG00000015309	snrnp48	92	47.840	ENSLACG00000003958	SNRNP48	94	47.840	Latimeria_chalumnae
ENSAMXG00000015309	snrnp48	85	62.456	ENSLOCG00000004187	snrnp48	94	60.436	Lepisosteus_oculatus
ENSAMXG00000015309	snrnp48	83	48.043	ENSLAFG00000011152	SNRNP48	90	45.048	Loxodonta_africana
ENSAMXG00000015309	snrnp48	85	47.735	ENSMFAG00000045216	SNRNP48	94	45.370	Macaca_fascicularis
ENSAMXG00000015309	snrnp48	85	47.735	ENSMMUG00000014785	SNRNP48	94	45.370	Macaca_mulatta
ENSAMXG00000015309	snrnp48	85	47.735	ENSMNEG00000042269	SNRNP48	94	45.370	Macaca_nemestrina
ENSAMXG00000015309	snrnp48	85	47.735	ENSMLEG00000034004	SNRNP48	94	45.370	Mandrillus_leucophaeus
ENSAMXG00000015309	snrnp48	97	57.895	ENSMAMG00000018673	snrnp48	82	58.514	Mastacembelus_armatus
ENSAMXG00000015309	snrnp48	85	49.158	ENSMGAG00000006037	SNRNP48	90	51.292	Meleagris_gallopavo
ENSAMXG00000015309	snrnp48	97	44.412	ENSMAUG00000011944	Snrnp48	93	45.963	Mesocricetus_auratus
ENSAMXG00000015309	snrnp48	84	47.735	ENSMICG00000012497	SNRNP48	94	45.846	Microcebus_murinus
ENSAMXG00000015309	snrnp48	98	44.575	ENSMOCG00000015555	Snrnp48	94	46.296	Microtus_ochrogaster
ENSAMXG00000015309	snrnp48	61	64.000	ENSMMOG00000003072	-	62	64.000	Mola_mola
ENSAMXG00000015309	snrnp48	86	49.832	ENSMODG00000009996	SNRNP48	87	47.678	Monodelphis_domestica
ENSAMXG00000015309	snrnp48	79	63.218	ENSMALG00000005725	snrnp48	94	58.044	Monopterus_albus
ENSAMXG00000015309	snrnp48	97	44.543	MGP_CAROLIEiJ_G0018441	Snrnp48	93	45.963	Mus_caroli
ENSAMXG00000015309	snrnp48	97	44.543	ENSMUSG00000021431	Snrnp48	93	45.963	Mus_musculus
ENSAMXG00000015309	snrnp48	97	45.133	MGP_PahariEiJ_G0019509	Snrnp48	93	46.584	Mus_pahari
ENSAMXG00000015309	snrnp48	97	44.838	MGP_SPRETEiJ_G0019321	Snrnp48	93	46.273	Mus_spretus
ENSAMXG00000015309	snrnp48	97	44.118	ENSNGAG00000004849	Snrnp48	93	45.342	Nannospalax_galili
ENSAMXG00000015309	snrnp48	95	58.307	ENSNBRG00000012127	snrnp48	93	57.632	Neolamprologus_brichardi
ENSAMXG00000015309	snrnp48	85	47.735	ENSNLEG00000011667	SNRNP48	94	45.370	Nomascus_leucogenys
ENSAMXG00000015309	snrnp48	92	46.584	ENSOPRG00000015471	SNRNP48	98	46.894	Ochotona_princeps
ENSAMXG00000015309	snrnp48	95	58.621	ENSONIG00000001520	snrnp48	93	57.632	Oreochromis_niloticus
ENSAMXG00000015309	snrnp48	56	40.097	ENSOANG00000019888	-	99	40.097	Ornithorhynchus_anatinus
ENSAMXG00000015309	snrnp48	80	47.080	ENSOCUG00000005168	SNRNP48	92	47.735	Oryctolagus_cuniculus
ENSAMXG00000015309	snrnp48	89	59.661	ENSORLG00000015654	snrnp48	93	57.500	Oryzias_latipes
ENSAMXG00000015309	snrnp48	89	57.288	ENSORLG00020015976	snrnp48	79	56.250	Oryzias_latipes_hni
ENSAMXG00000015309	snrnp48	89	57.288	ENSORLG00015022379	snrnp48	80	56.250	Oryzias_latipes_hsok
ENSAMXG00000015309	snrnp48	95	58.044	ENSOMEG00000022007	snrnp48	93	57.680	Oryzias_melastigma
ENSAMXG00000015309	snrnp48	83	47.535	ENSOGAG00000005275	SNRNP48	95	45.652	Otolemur_garnettii
ENSAMXG00000015309	snrnp48	86	46.075	ENSOARG00000017319	SNRNP48	91	47.407	Ovis_aries
ENSAMXG00000015309	snrnp48	85	47.735	ENSPPAG00000032873	SNRNP48	94	45.370	Pan_paniscus
ENSAMXG00000015309	snrnp48	85	47.222	ENSPPRG00000004283	SNRNP48	94	44.923	Panthera_pardus
ENSAMXG00000015309	snrnp48	72	50.000	ENSPTIG00000013502	SNRNP48	92	46.886	Panthera_tigris_altaica
ENSAMXG00000015309	snrnp48	85	47.735	ENSPTRG00000017703	SNRNP48	94	45.370	Pan_troglodytes
ENSAMXG00000015309	snrnp48	85	47.735	ENSPANG00000000771	SNRNP48	94	45.370	Papio_anubis
ENSAMXG00000015309	snrnp48	87	59.866	ENSPKIG00000013703	snrnp48	63	60.535	Paramormyrops_kingsleyae
ENSAMXG00000015309	snrnp48	86	46.865	ENSPSIG00000002213	SNRNP48	87	47.842	Pelodiscus_sinensis
ENSAMXG00000015309	snrnp48	79	55.431	ENSPMGG00000008120	snrnp48	95	55.431	Periophthalmus_magnuspinnatus
ENSAMXG00000015309	snrnp48	97	44.412	ENSPEMG00000008872	Snrnp48	93	45.963	Peromyscus_maniculatus_bairdii
ENSAMXG00000015309	snrnp48	78	65.134	ENSPFOG00000003578	snrnp48	94	57.187	Poecilia_formosa
ENSAMXG00000015309	snrnp48	76	60.606	ENSPLAG00000002290	snrnp48	91	59.091	Poecilia_latipinna
ENSAMXG00000015309	snrnp48	78	65.134	ENSPMEG00000018033	snrnp48	94	57.187	Poecilia_mexicana
ENSAMXG00000015309	snrnp48	77	64.706	ENSPREG00000018541	snrnp48	94	57.231	Poecilia_reticulata
ENSAMXG00000015309	snrnp48	85	46.690	ENSPPYG00000016209	SNRNP48	94	44.444	Pongo_abelii
ENSAMXG00000015309	snrnp48	72	37.302	ENSPCAG00000011991	SNRNP48	97	38.346	Procavia_capensis
ENSAMXG00000015309	snrnp48	85	45.993	ENSPVAG00000002854	SNRNP48	93	43.827	Pteropus_vampyrus
ENSAMXG00000015309	snrnp48	77	62.353	ENSPNYG00000015399	snrnp48	99	57.419	Pundamilia_nyererei
ENSAMXG00000015309	snrnp48	97	44.838	ENSRNOG00000013756	Snrnp48	93	46.273	Rattus_norvegicus
ENSAMXG00000015309	snrnp48	85	47.735	ENSRBIG00000043856	SNRNP48	89	47.902	Rhinopithecus_bieti
ENSAMXG00000015309	snrnp48	85	47.735	ENSRROG00000043229	SNRNP48	94	45.370	Rhinopithecus_roxellana
ENSAMXG00000015309	snrnp48	85	48.084	ENSSBOG00000019486	SNRNP48	94	45.679	Saimiri_boliviensis_boliviensis
ENSAMXG00000015309	snrnp48	96	43.228	ENSSHAG00000014483	SNRNP48	93	44.817	Sarcophilus_harrisii
ENSAMXG00000015309	snrnp48	78	62.132	ENSSFOG00015006610	snrnp48	73	59.425	Scleropages_formosus
ENSAMXG00000015309	snrnp48	89	58.503	ENSSDUG00000014953	snrnp48	93	55.660	Seriola_dumerili
ENSAMXG00000015309	snrnp48	89	57.823	ENSSLDG00000005989	snrnp48	93	54.829	Seriola_lalandi_dorsalis
ENSAMXG00000015309	snrnp48	97	45.536	ENSSPUG00000006257	SNRNP48	88	47.604	Sphenodon_punctatus
ENSAMXG00000015309	snrnp48	94	57.962	ENSSPAG00000006454	snrnp48	91	58.228	Stegastes_partitus
ENSAMXG00000015309	snrnp48	87	48.667	ENSTGUG00000007575	SNRNP48	90	49.117	Taeniopygia_guttata
ENSAMXG00000015309	snrnp48	77	56.863	ENSTRUG00000007031	snrnp48	93	51.703	Takifugu_rubripes
ENSAMXG00000015309	snrnp48	99	48.936	ENSTNIG00000012977	-	92	50.155	Tetraodon_nigroviridis
ENSAMXG00000015309	snrnp48	76	49.421	ENSTBEG00000015620	SNRNP48	76	49.421	Tupaia_belangeri
ENSAMXG00000015309	snrnp48	93	44.207	ENSTTRG00000016715	SNRNP48	91	45.426	Tursiops_truncatus
ENSAMXG00000015309	snrnp48	97	44.767	ENSUAMG00000003690	SNRNP48	91	46.178	Ursus_americanus
ENSAMXG00000015309	snrnp48	73	49.583	ENSVPAG00000003557	SNRNP48	91	47.212	Vicugna_pacos
ENSAMXG00000015309	snrnp48	99	44.160	ENSVVUG00000004996	SNRNP48	92	45.794	Vulpes_vulpes
ENSAMXG00000015309	snrnp48	90	44.667	ENSXETG00000020447	snrnp48	90	43.464	Xenopus_tropicalis
ENSAMXG00000015309	snrnp48	72	64.017	ENSXCOG00000004478	snrnp48	93	53.376	Xiphophorus_couchianus
ENSAMXG00000015309	snrnp48	78	64.368	ENSXMAG00000013595	snrnp48	94	56.269	Xiphophorus_maculatus