EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000015612 (Gene tree)
Gene ID: 103039618
Gene Symbol: cirbpb
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold-inducible RNA-binding protein B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 7890 bases
Position: chr5:11366147-11374036
Accession: 103039618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000016064	RRM_1	PF00076.22	7e-26	1	1
ENSAMXP00000043013	RRM_1	PF00076.22	7.6e-26	1	1
ENSAMXP00000043629	RRM_1	PF00076.22	7.6e-26	1	1
ENSAMXP00000031571	RRM_1	PF00076.22	9.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045815	-	4472	-	ENSAMXP00000043629	220 (aa)	-	-
ENSAMXT00000056016	-	2661	XM_007252621	ENSAMXP00000031571	243 (aa)	XP_007252683	-
ENSAMXT00000037668	-	4428	-	ENSAMXP00000043013	220 (aa)	-	-
ENSAMXT00000016064	-	2016	-	ENSAMXP00000016064	213 (aa)	-	W5L8A2

Gene Model

Click here to download ENSAMXG00000015612's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000015612's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000015612	cirbpb	58	32.800	ENSAMXG00000041812	ncbp2	53	30.337

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000015612	cirbpb	82	59.322	ENSACIG00000016116	cirbpa	100	51.456	Amphilophus_citrinellus
ENSAMXG00000015612	cirbpb	82	60.656	ENSATEG00000014985	cirbpa	100	52.404	Anabas_testudineus
ENSAMXG00000015612	cirbpb	82	61.582	ENSACLG00000002094	-	100	57.282	Astatotilapia_calliptera
ENSAMXG00000015612	cirbpb	84	58.173	ENSCVAG00000004853	cirbpa	100	53.431	Cyprinodon_variegatus
ENSAMXG00000015612	cirbpb	84	68.599	ENSDARG00000013351	cirbpb	92	70.813	Danio_rerio
ENSAMXG00000015612	cirbpb	58	55.118	ENSELUG00000004675	-	57	74.699	Esox_lucius
ENSAMXG00000015612	cirbpb	81	59.016	ENSFHEG00000002580	cirbpa	100	53.140	Fundulus_heteroclitus
ENSAMXG00000015612	cirbpb	84	59.804	ENSGAFG00000008654	cirbpa	100	55.288	Gambusia_affinis
ENSAMXG00000015612	cirbpb	84	57.212	ENSGACG00000015206	cirbpa	100	50.971	Gasterosteus_aculeatus
ENSAMXG00000015612	cirbpb	82	58.730	ENSHBUG00000022060	cirbpa	100	56.796	Haplochromis_burtoni
ENSAMXG00000015612	cirbpb	57	68.462	ENSIPUG00000000698	cirbpb	100	75.362	Ictalurus_punctatus
ENSAMXG00000015612	cirbpb	82	59.770	ENSLBEG00000000292	cirbpa	52	72.289	Labrus_bergylta
ENSAMXG00000015612	cirbpb	84	57.353	ENSMAMG00000010168	cirbpa	100	55.392	Mastacembelus_armatus
ENSAMXG00000015612	cirbpb	82	58.730	ENSMZEG00005025577	-	100	56.796	Maylandia_zebra
ENSAMXG00000015612	cirbpb	82	59.239	ENSMALG00000020092	cirbpa	100	52.941	Monopterus_albus
ENSAMXG00000015612	cirbpb	82	58.730	ENSNBRG00000019658	cirbpa	100	56.796	Neolamprologus_brichardi
ENSAMXG00000015612	cirbpb	82	59.887	ENSONIG00000010169	cirbpa	100	55.825	Oreochromis_niloticus
ENSAMXG00000015612	cirbpb	82	57.143	ENSORLG00000015433	cirbpa	100	54.902	Oryzias_latipes
ENSAMXG00000015612	cirbpb	82	57.143	ENSORLG00020016909	cirbpa	100	54.902	Oryzias_latipes_hni
ENSAMXG00000015612	cirbpb	82	57.143	ENSORLG00015016636	cirbpa	100	54.902	Oryzias_latipes_hsok
ENSAMXG00000015612	cirbpb	82	59.218	ENSOMEG00000021469	cirbpa	73	53.365	Oryzias_melastigma
ENSAMXG00000015612	cirbpb	84	56.585	ENSPFOG00000015653	cirbpa	100	55.024	Poecilia_formosa
ENSAMXG00000015612	cirbpb	84	56.650	ENSPLAG00000011125	cirbpa	100	55.072	Poecilia_latipinna
ENSAMXG00000015612	cirbpb	84	56.863	ENSPMEG00000013878	cirbpa	100	55.288	Poecilia_mexicana
ENSAMXG00000015612	cirbpb	84	55.665	ENSPREG00000018042	cirbpa	98	54.106	Poecilia_reticulata
ENSAMXG00000015612	cirbpb	82	58.730	ENSPNYG00000007198	-	100	56.796	Pundamilia_nyererei
ENSAMXG00000015612	cirbpb	84	82.843	ENSPNAG00000019997	cirbpb	100	83.824	Pygocentrus_nattereri
ENSAMXG00000015612	cirbpb	84	65.534	ENSSFOG00015005346	cirbpb	100	67.805	Scleropages_formosus
ENSAMXG00000015612	cirbpb	82	56.571	ENSSPAG00000023037	cirbpa	51	75.904	Stegastes_partitus
ENSAMXG00000015612	cirbpb	82	61.798	ENSTRUG00000010187	cirbpa	100	53.431	Takifugu_rubripes
ENSAMXG00000015612	cirbpb	82	58.470	ENSTNIG00000000450	cirbpa	100	55.288	Tetraodon_nigroviridis
ENSAMXG00000015612	cirbpb	84	55.665	ENSXCOG00000008262	cirbpa	92	72.603	Xiphophorus_couchianus
ENSAMXG00000015612	cirbpb	82	58.919	ENSXMAG00000019336	cirbpa	100	55.769	Xiphophorus_maculatus