EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000015752 (Gene tree)
Gene ID: 103043093
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10916 bases
Position: chr24:32629143-32640058
Accession: 103043093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000016208	Gar1	PF04410.14	1.7e-36	1	1
ENSAMXP00000031492	Gar1	PF04410.14	1.7e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000016208	-	1744	XM_007245533	ENSAMXP00000016208	229 (aa)	XP_007245595	W5L8P6
ENSAMXT00000039136	-	4817	-	ENSAMXP00000031492	230 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000015752's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000015752's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000015752	gar1	66	84.167	ENSAMEG00000004605	GAR1	54	87.273	Ailuropoda_melanoleuca
ENSAMXG00000015752	gar1	77	80.000	ENSACAG00000010031	GAR1	50	87.736	Anolis_carolinensis
ENSAMXG00000015752	gar1	71	83.688	ENSBTAG00000000748	GAR1	52	87.273	Bos_taurus
ENSAMXG00000015752	gar1	74	83.688	ENSCHIG00000016026	-	53	87.273	Capra_hircus
ENSAMXG00000015752	gar1	52	84.167	ENSDNOG00000037632	GAR1	56	87.273	Dasypus_novemcinctus
ENSAMXG00000015752	gar1	66	85.000	ENSFCAG00000040791	-	53	88.182	Felis_catus
ENSAMXG00000015752	gar1	82	85.926	ENSHGLG00000000493	GAR1	72	96.364	Heterocephalus_glaber_female
ENSAMXG00000015752	gar1	62	87.943	ENSIPUG00000003194	gar1	52	91.818	Ictalurus_punctatus
ENSAMXG00000015752	gar1	66	76.974	ENSMICG00000003326	GAR1	51	86.364	Microcebus_murinus
ENSAMXG00000015752	gar1	61	78.571	ENSMMOG00000004156	gar1	52	91.589	Mola_mola
ENSAMXG00000015752	gar1	66	85.000	ENSMPUG00000008615	GAR1	53	88.182	Mustela_putorius_furo
ENSAMXG00000015752	gar1	66	76.159	ENSNGAG00000008268	Gar1	71	94.545	Nannospalax_galili
ENSAMXG00000015752	gar1	81	69.444	ENSNLEG00000034282	-	93	69.014	Nomascus_leucogenys
ENSAMXG00000015752	gar1	59	84.444	ENSOCUG00000003901	GAR1	51	87.273	Oryctolagus_cuniculus
ENSAMXG00000015752	gar1	70	81.875	ENSORLG00000020583	gar1	50	91.818	Oryzias_latipes
ENSAMXG00000015752	gar1	70	81.875	ENSORLG00020008602	gar1	50	91.818	Oryzias_latipes_hni
ENSAMXG00000015752	gar1	70	81.875	ENSORLG00015017643	gar1	50	91.818	Oryzias_latipes_hsok
ENSAMXG00000015752	gar1	74	72.941	ENSOGAG00000004693	GAR1	52	87.273	Otolemur_garnettii
ENSAMXG00000015752	gar1	62	83.688	ENSOARG00000004910	GAR1	52	87.273	Ovis_aries
ENSAMXG00000015752	gar1	61	83.453	ENSPPAG00000014081	GAR1	65	86.822	Pan_paniscus
ENSAMXG00000015752	gar1	66	85.000	ENSPPRG00000023697	GAR1	53	88.182	Panthera_pardus
ENSAMXG00000015752	gar1	66	85.000	ENSPTIG00000021565	GAR1	53	88.182	Panthera_tigris_altaica
ENSAMXG00000015752	gar1	56	80.620	ENSPSIG00000002970	GAR1	50	86.364	Pelodiscus_sinensis
ENSAMXG00000015752	gar1	73	76.647	ENSPCOG00000027049	GAR1	56	87.273	Propithecus_coquereli
ENSAMXG00000015752	gar1	86	67.626	ENSRBIG00000042411	-	53	70.909	Rhinopithecus_bieti
ENSAMXG00000015752	gar1	86	67.626	ENSRROG00000044348	-	53	70.909	Rhinopithecus_roxellana
ENSAMXG00000015752	gar1	61	83.571	ENSSBOG00000024785	GAR1	51	87.273	Saimiri_boliviensis_boliviensis
ENSAMXG00000015752	gar1	66	76.974	ENSSLDG00000023264	gar1	52	90.909	Seriola_lalandi_dorsalis
ENSAMXG00000015752	gar1	75	79.856	ENSSPUG00000008707	GAR1	61	87.273	Sphenodon_punctatus
ENSAMXG00000015752	gar1	77	84.173	ENSSSCG00000009137	GAR1	54	87.273	Sus_scrofa
ENSAMXG00000015752	gar1	75	84.892	ENSUMAG00000000776	GAR1	53	88.182	Ursus_maritimus