EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000015845 (Gene tree)
Gene ID: 103047233
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3159 bases
Position: chr4:6149324-6152482
Accession: 103047233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000016367	TruB_N	PF01509.18	1.6e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000016367	-	900	XM_007259273	ENSAMXP00000016367	299 (aa)	XP_007259335	W5L955

Gene Model

Click here to download ENSAMXG00000015845's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000015845's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000015845	trub1	63	31.088	ENSAMXG00000031679	trub2	55	31.088

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000015845	trub1	90	65.926	ENSG00000165832	TRUB1	77	65.926	Homo_sapiens
ENSAMXG00000015845	trub1	82	78.279	ENSAPOG00000020565	trub1	94	77.132	Acanthochromis_polyacanthus
ENSAMXG00000015845	trub1	90	65.074	ENSAMEG00000014931	TRUB1	77	65.074	Ailuropoda_melanoleuca
ENSAMXG00000015845	trub1	95	66.551	ENSACIG00000003060	trub1	96	66.551	Amphilophus_citrinellus
ENSAMXG00000015845	trub1	82	78.689	ENSAOCG00000017188	trub1	91	78.486	Amphiprion_ocellaris
ENSAMXG00000015845	trub1	83	78.313	ENSAPEG00000015209	trub1	91	78.088	Amphiprion_percula
ENSAMXG00000015845	trub1	82	78.279	ENSATEG00000023291	trub1	87	78.279	Anabas_testudineus
ENSAMXG00000015845	trub1	89	64.662	ENSAPLG00000006808	TRUB1	95	64.662	Anas_platyrhynchos
ENSAMXG00000015845	trub1	87	63.320	ENSACAG00000009282	TRUB1	93	63.320	Anolis_carolinensis
ENSAMXG00000015845	trub1	90	65.314	ENSANAG00000022870	TRUB1	77	65.314	Aotus_nancymaae
ENSAMXG00000015845	trub1	87	74.330	ENSACLG00000000823	trub1	94	74.330	Astatotilapia_calliptera
ENSAMXG00000015845	trub1	87	67.433	ENSBTAG00000012955	TRUB1	74	67.433	Bos_taurus
ENSAMXG00000015845	trub1	90	65.314	ENSCJAG00000047815	TRUB1	77	65.314	Callithrix_jacchus
ENSAMXG00000015845	trub1	90	65.926	ENSCAFG00000011688	TRUB1	77	65.926	Canis_familiaris
ENSAMXG00000015845	trub1	90	65.926	ENSCAFG00020013237	TRUB1	77	65.926	Canis_lupus_dingo
ENSAMXG00000015845	trub1	87	67.433	ENSCHIG00000020884	TRUB1	78	67.433	Capra_hircus
ENSAMXG00000015845	trub1	90	64.815	ENSTSYG00000000446	TRUB1	77	64.815	Carlito_syrichta
ENSAMXG00000015845	trub1	76	59.912	ENSCAPG00000017088	TRUB1	89	59.912	Cavia_aperea
ENSAMXG00000015845	trub1	61	66.120	ENSCPOG00000040236	-	75	66.120	Cavia_porcellus
ENSAMXG00000015845	trub1	62	65.591	ENSCPOG00000030129	-	72	65.591	Cavia_porcellus
ENSAMXG00000015845	trub1	90	64.945	ENSCCAG00000028842	TRUB1	77	64.945	Cebus_capucinus
ENSAMXG00000015845	trub1	92	64.727	ENSCATG00000033431	TRUB1	79	64.727	Cercocebus_atys
ENSAMXG00000015845	trub1	61	65.574	ENSCLAG00000008664	TRUB1	75	65.574	Chinchilla_lanigera
ENSAMXG00000015845	trub1	90	65.314	ENSCSAG00000004891	TRUB1	77	65.314	Chlorocebus_sabaeus
ENSAMXG00000015845	trub1	84	60.317	ENSCHOG00000011931	TRUB1	73	60.317	Choloepus_hoffmanni
ENSAMXG00000015845	trub1	85	67.717	ENSCPBG00000003051	TRUB1	88	67.717	Chrysemys_picta_bellii
ENSAMXG00000015845	trub1	90	65.314	ENSCANG00000029445	TRUB1	77	65.314	Colobus_angolensis_palliatus
ENSAMXG00000015845	trub1	78	66.094	ENSCGRG00001016772	-	78	65.957	Cricetulus_griseus_chok1gshd
ENSAMXG00000015845	trub1	87	57.915	ENSCGRG00001010322	-	71	57.143	Cricetulus_griseus_chok1gshd
ENSAMXG00000015845	trub1	87	65.251	ENSCGRG00000010806	Trub1	81	64.662	Cricetulus_griseus_crigri
ENSAMXG00000015845	trub1	83	73.896	ENSCSEG00000011261	trub1	83	72.093	Cynoglossus_semilaevis
ENSAMXG00000015845	trub1	96	70.280	ENSCVAG00000008791	trub1	86	70.280	Cyprinodon_variegatus
ENSAMXG00000015845	trub1	95	78.246	ENSDARG00000053805	trub1	99	85.294	Danio_rerio
ENSAMXG00000015845	trub1	89	63.158	ENSDNOG00000001069	TRUB1	76	63.158	Dasypus_novemcinctus
ENSAMXG00000015845	trub1	85	66.142	ENSDORG00000010431	Trub1	78	64.444	Dipodomys_ordii
ENSAMXG00000015845	trub1	73	66.912	ENSETEG00000009183	TRUB1	61	66.912	Echinops_telfairi
ENSAMXG00000015845	trub1	92	64.000	ENSEASG00005014739	TRUB1	79	64.000	Equus_asinus_asinus
ENSAMXG00000015845	trub1	92	64.000	ENSECAG00000007177	TRUB1	79	64.000	Equus_caballus
ENSAMXG00000015845	trub1	87	58.462	ENSEEUG00000013993	TRUB1	72	58.462	Erinaceus_europaeus
ENSAMXG00000015845	trub1	87	82.239	ENSELUG00000000502	trub1	91	82.239	Esox_lucius
ENSAMXG00000015845	trub1	87	67.433	ENSFCAG00000031927	TRUB1	75	67.433	Felis_catus
ENSAMXG00000015845	trub1	72	68.837	ENSFALG00000002232	TRUB1	83	68.837	Ficedula_albicollis
ENSAMXG00000015845	trub1	61	66.667	ENSFDAG00000008140	TRUB1	75	66.667	Fukomys_damarensis
ENSAMXG00000015845	trub1	87	73.077	ENSFHEG00000004016	trub1	92	71.111	Fundulus_heteroclitus
ENSAMXG00000015845	trub1	87	65.134	ENSGALG00000009091	TRUB1	92	65.134	Gallus_gallus
ENSAMXG00000015845	trub1	80	75.934	ENSGAFG00000009193	trub1	85	75.934	Gambusia_affinis
ENSAMXG00000015845	trub1	68	76.471	ENSGACG00000015387	trub1	100	76.471	Gasterosteus_aculeatus
ENSAMXG00000015845	trub1	85	68.504	ENSGAGG00000009758	TRUB1	70	69.796	Gopherus_agassizii
ENSAMXG00000015845	trub1	90	65.926	ENSGGOG00000004583	TRUB1	77	65.926	Gorilla_gorilla
ENSAMXG00000015845	trub1	87	73.946	ENSHBUG00000016787	trub1	94	73.946	Haplochromis_burtoni
ENSAMXG00000015845	trub1	87	64.368	ENSHGLG00000015314	TRUB1	75	64.368	Heterocephalus_glaber_female
ENSAMXG00000015845	trub1	61	66.120	ENSHGLG00100009183	TRUB1	77	66.120	Heterocephalus_glaber_male
ENSAMXG00000015845	trub1	83	77.510	ENSHCOG00000017877	trub1	90	77.510	Hippocampus_comes
ENSAMXG00000015845	trub1	96	82.230	ENSIPUG00000017559	trub1	98	83.513	Ictalurus_punctatus
ENSAMXG00000015845	trub1	89	64.794	ENSSTOG00000003641	TRUB1	80	64.794	Ictidomys_tridecemlineatus
ENSAMXG00000015845	trub1	89	64.925	ENSJJAG00000011800	Trub1	79	64.925	Jaculus_jaculus
ENSAMXG00000015845	trub1	83	73.896	ENSKMAG00000006232	trub1	90	73.896	Kryptolebias_marmoratus
ENSAMXG00000015845	trub1	88	74.242	ENSLBEG00000026722	trub1	92	74.242	Labrus_bergylta
ENSAMXG00000015845	trub1	87	66.795	ENSLACG00000014885	TRUB1	87	66.795	Latimeria_chalumnae
ENSAMXG00000015845	trub1	89	74.717	ENSLOCG00000012979	trub1	90	74.717	Lepisosteus_oculatus
ENSAMXG00000015845	trub1	87	65.385	ENSLAFG00000015452	TRUB1	77	64.925	Loxodonta_africana
ENSAMXG00000015845	trub1	90	65.314	ENSMFAG00000031767	TRUB1	77	65.314	Macaca_fascicularis
ENSAMXG00000015845	trub1	90	65.314	ENSMMUG00000001902	TRUB1	77	65.314	Macaca_mulatta
ENSAMXG00000015845	trub1	90	59.779	ENSMNEG00000044646	TRUB1	77	59.779	Macaca_nemestrina
ENSAMXG00000015845	trub1	90	65.314	ENSMLEG00000042655	TRUB1	77	65.314	Mandrillus_leucophaeus
ENSAMXG00000015845	trub1	87	74.330	ENSMZEG00005024095	trub1	94	74.330	Maylandia_zebra
ENSAMXG00000015845	trub1	87	65.900	ENSMGAG00000011135	TRUB1	90	65.900	Meleagris_gallopavo
ENSAMXG00000015845	trub1	85	63.922	ENSMAUG00000011101	Trub1	80	62.362	Mesocricetus_auratus
ENSAMXG00000015845	trub1	90	65.556	ENSMICG00000016324	TRUB1	77	65.556	Microcebus_murinus
ENSAMXG00000015845	trub1	87	66.023	ENSMOCG00000017759	Trub1	83	64.364	Microtus_ochrogaster
ENSAMXG00000015845	trub1	82	70.082	ENSMODG00000009676	TRUB1	69	69.076	Monodelphis_domestica
ENSAMXG00000015845	trub1	85	65.882	MGP_CAROLIEiJ_G0023100	Trub1	77	65.251	Mus_caroli
ENSAMXG00000015845	trub1	85	65.098	ENSMUSG00000025086	Trub1	77	64.479	Mus_musculus
ENSAMXG00000015845	trub1	89	63.433	MGP_PahariEiJ_G0014588	Trub1	79	63.433	Mus_pahari
ENSAMXG00000015845	trub1	85	65.098	MGP_SPRETEiJ_G0024021	Trub1	77	64.479	Mus_spretus
ENSAMXG00000015845	trub1	90	65.926	ENSMPUG00000003556	TRUB1	77	65.926	Mustela_putorius_furo
ENSAMXG00000015845	trub1	90	64.444	ENSMLUG00000017686	TRUB1	79	64.444	Myotis_lucifugus
ENSAMXG00000015845	trub1	90	65.056	ENSNGAG00000018682	Trub1	77	65.056	Nannospalax_galili
ENSAMXG00000015845	trub1	90	72.222	ENSNBRG00000023393	trub1	96	72.222	Neolamprologus_brichardi
ENSAMXG00000015845	trub1	90	65.926	ENSNLEG00000016345	TRUB1	77	65.926	Nomascus_leucogenys
ENSAMXG00000015845	trub1	67	71.144	ENSMEUG00000006603	TRUB1	77	69.231	Notamacropus_eugenii
ENSAMXG00000015845	trub1	87	65.517	ENSOPRG00000009371	TRUB1	76	65.517	Ochotona_princeps
ENSAMXG00000015845	trub1	89	62.782	ENSODEG00000010854	TRUB1	76	62.782	Octodon_degus
ENSAMXG00000015845	trub1	87	75.096	ENSONIG00000007249	trub1	95	75.096	Oreochromis_niloticus
ENSAMXG00000015845	trub1	88	64.259	ENSOANG00000001556	TRUB1	88	63.806	Ornithorhynchus_anatinus
ENSAMXG00000015845	trub1	89	65.038	ENSOCUG00000009456	TRUB1	77	65.038	Oryctolagus_cuniculus
ENSAMXG00000015845	trub1	87	73.563	ENSORLG00000029719	trub1	96	72.761	Oryzias_latipes
ENSAMXG00000015845	trub1	87	73.563	ENSORLG00020016767	trub1	95	72.761	Oryzias_latipes_hni
ENSAMXG00000015845	trub1	87	74.330	ENSORLG00015014728	trub1	96	73.507	Oryzias_latipes_hsok
ENSAMXG00000015845	trub1	91	72.426	ENSOMEG00000014556	trub1	95	72.426	Oryzias_melastigma
ENSAMXG00000015845	trub1	90	65.556	ENSOGAG00000015895	TRUB1	77	65.556	Otolemur_garnettii
ENSAMXG00000015845	trub1	87	66.045	ENSOARG00000015591	TRUB1	76	66.045	Ovis_aries
ENSAMXG00000015845	trub1	90	65.926	ENSPPAG00000043645	TRUB1	77	65.926	Pan_paniscus
ENSAMXG00000015845	trub1	87	67.050	ENSPPRG00000007096	TRUB1	75	67.050	Panthera_pardus
ENSAMXG00000015845	trub1	87	67.050	ENSPTIG00000006378	TRUB1	75	67.050	Panthera_tigris_altaica
ENSAMXG00000015845	trub1	90	65.926	ENSPTRG00000002964	TRUB1	77	65.926	Pan_troglodytes
ENSAMXG00000015845	trub1	90	65.314	ENSPANG00000020712	TRUB1	77	65.314	Papio_anubis
ENSAMXG00000015845	trub1	57	78.947	ENSPKIG00000003852	trub1	74	78.947	Paramormyrops_kingsleyae
ENSAMXG00000015845	trub1	81	69.959	ENSPSIG00000012877	TRUB1	83	69.959	Pelodiscus_sinensis
ENSAMXG00000015845	trub1	85	73.913	ENSPMGG00000000075	trub1	91	73.913	Periophthalmus_magnuspinnatus
ENSAMXG00000015845	trub1	92	62.545	ENSPEMG00000011156	Trub1	81	62.545	Peromyscus_maniculatus_bairdii
ENSAMXG00000015845	trub1	82	70.082	ENSPCIG00000009729	TRUB1	68	68.924	Phascolarctos_cinereus
ENSAMXG00000015845	trub1	83	77.510	ENSPFOG00000009950	trub1	91	77.510	Poecilia_formosa
ENSAMXG00000015845	trub1	83	77.510	ENSPLAG00000013855	trub1	87	77.510	Poecilia_latipinna
ENSAMXG00000015845	trub1	83	77.510	ENSPMEG00000009064	trub1	90	77.510	Poecilia_mexicana
ENSAMXG00000015845	trub1	83	77.108	ENSPREG00000003343	trub1	90	77.108	Poecilia_reticulata
ENSAMXG00000015845	trub1	90	65.556	ENSPPYG00000002676	TRUB1	77	65.556	Pongo_abelii
ENSAMXG00000015845	trub1	90	58.519	ENSPCAG00000008427	TRUB1	77	58.519	Procavia_capensis
ENSAMXG00000015845	trub1	90	60.000	ENSPCOG00000024360	TRUB1	76	60.000	Propithecus_coquereli
ENSAMXG00000015845	trub1	68	69.802	ENSPVAG00000007575	TRUB1	77	69.802	Pteropus_vampyrus
ENSAMXG00000015845	trub1	87	74.330	ENSPNYG00000018614	trub1	94	74.330	Pundamilia_nyererei
ENSAMXG00000015845	trub1	100	76.923	ENSPNAG00000006881	trub1	99	76.923	Pygocentrus_nattereri
ENSAMXG00000015845	trub1	89	63.060	ENSRNOG00000017321	Trub1	79	63.060	Rattus_norvegicus
ENSAMXG00000015845	trub1	92	56.679	ENSRBIG00000033423	TRUB1	76	57.143	Rhinopithecus_bieti
ENSAMXG00000015845	trub1	90	65.314	ENSRROG00000033902	TRUB1	77	65.314	Rhinopithecus_roxellana
ENSAMXG00000015845	trub1	59	34.146	YNL292W	-	51	34.146	Saccharomyces_cerevisiae
ENSAMXG00000015845	trub1	90	65.314	ENSSBOG00000024237	TRUB1	77	65.314	Saimiri_boliviensis_boliviensis
ENSAMXG00000015845	trub1	71	71.163	ENSSHAG00000009346	TRUB1	72	71.163	Sarcophilus_harrisii
ENSAMXG00000015845	trub1	93	71.942	ENSSFOG00015022124	trub1	95	71.942	Scleropages_formosus
ENSAMXG00000015845	trub1	88	75.285	ENSSMAG00000001020	trub1	93	75.285	Scophthalmus_maximus
ENSAMXG00000015845	trub1	81	80.498	ENSSDUG00000016414	trub1	90	80.080	Seriola_dumerili
ENSAMXG00000015845	trub1	81	80.498	ENSSLDG00000015486	trub1	90	80.080	Seriola_lalandi_dorsalis
ENSAMXG00000015845	trub1	87	67.816	ENSSPUG00000001642	TRUB1	90	67.816	Sphenodon_punctatus
ENSAMXG00000015845	trub1	83	79.116	ENSSPAG00000001217	trub1	90	79.116	Stegastes_partitus
ENSAMXG00000015845	trub1	87	66.284	ENSSSCG00000010653	TRUB1	76	66.284	Sus_scrofa
ENSAMXG00000015845	trub1	82	69.262	ENSTGUG00000010971	TRUB1	87	69.262	Taeniopygia_guttata
ENSAMXG00000015845	trub1	76	58.590	ENSTBEG00000002880	TRUB1	89	58.590	Tupaia_belangeri
ENSAMXG00000015845	trub1	70	67.773	ENSTTRG00000005767	TRUB1	77	69.307	Tursiops_truncatus
ENSAMXG00000015845	trub1	90	65.926	ENSUAMG00000024876	TRUB1	77	65.926	Ursus_americanus
ENSAMXG00000015845	trub1	87	67.050	ENSUMAG00000002411	TRUB1	80	65.926	Ursus_maritimus
ENSAMXG00000015845	trub1	87	67.050	ENSVPAG00000005507	TRUB1	75	67.050	Vicugna_pacos
ENSAMXG00000015845	trub1	90	65.926	ENSVVUG00000010085	TRUB1	65	65.926	Vulpes_vulpes
ENSAMXG00000015845	trub1	87	66.667	ENSXETG00000023828	trub1	94	66.667	Xenopus_tropicalis
ENSAMXG00000015845	trub1	89	71.161	ENSXCOG00000017847	trub1	90	71.161	Xiphophorus_couchianus
ENSAMXG00000015845	trub1	83	76.707	ENSXMAG00000014701	trub1	90	76.707	Xiphophorus_maculatus