EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000015881 (Gene tree)
Gene ID: 103045466
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: protein strawberry notch homolog 2-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 99322 bases
Position: chr5:12145072-12244393
Accession: 103045466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000043823	ResIII	PF04851.15	2.8e-08	1	1
ENSAMXP00000045279	ResIII	PF04851.15	2.9e-08	1	1
ENSAMXP00000016340	ResIII	PF04851.15	3.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043747	-	9166	XM_007252642	ENSAMXP00000043823	1364 (aa)	XP_007252704	UPI000BBD6358
ENSAMXT00000016340	-	9697	XM_007252641	ENSAMXP00000016340	1440 (aa)	XP_007252703	W5L928
ENSAMXT00000036317	-	9169	XM_022669612	ENSAMXP00000045279	1396 (aa)	XP_022525333	UPI000BBDEA7D

Gene Model

Click here to download ENSAMXG00000015881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000015881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000015881	si:ch73-63e15.2	69	66.284	ENSAMXG00000019473	sbno1	71	66.284
ENSAMXG00000015881	si:ch73-63e15.2	89	75.638	ENSAMXG00000018868	sbno2a	95	79.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000015881	si:ch73-63e15.2	84	68.696	ENSG00000064932	SBNO2	88	69.157	Homo_sapiens
ENSAMXG00000015881	si:ch73-63e15.2	84	81.708	ENSAPOG00000003185	si:ch73-63e15.2	91	78.024	Acanthochromis_polyacanthus
ENSAMXG00000015881	si:ch73-63e15.2	86	81.481	ENSAOCG00000016581	si:ch73-63e15.2	97	79.536	Amphiprion_ocellaris
ENSAMXG00000015881	si:ch73-63e15.2	86	81.566	ENSAPEG00000008862	si:ch73-63e15.2	79	81.566	Amphiprion_percula
ENSAMXG00000015881	si:ch73-63e15.2	87	79.455	ENSATEG00000023838	si:ch73-63e15.2	99	78.371	Anabas_testudineus
ENSAMXG00000015881	si:ch73-63e15.2	83	71.773	ENSAPLG00000007158	SBNO2	94	68.204	Anas_platyrhynchos
ENSAMXG00000015881	si:ch73-63e15.2	84	68.777	ENSANAG00000026685	SBNO2	92	67.160	Aotus_nancymaae
ENSAMXG00000015881	si:ch73-63e15.2	88	77.521	ENSACLG00000005090	si:ch73-63e15.2	87	71.725	Astatotilapia_calliptera
ENSAMXG00000015881	si:ch73-63e15.2	83	69.019	ENSBTAG00000020780	SBNO2	88	69.211	Bos_taurus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.721	ENSCAFG00000019543	SBNO2	90	66.480	Canis_familiaris
ENSAMXG00000015881	si:ch73-63e15.2	82	69.721	ENSCAFG00020017115	SBNO2	96	66.480	Canis_lupus_dingo
ENSAMXG00000015881	si:ch73-63e15.2	82	69.318	ENSCHIG00000026127	SBNO2	90	65.308	Capra_hircus
ENSAMXG00000015881	si:ch73-63e15.2	81	67.810	ENSCAPG00000005731	SBNO2	98	65.667	Cavia_aperea
ENSAMXG00000015881	si:ch73-63e15.2	82	67.686	ENSCPOG00000007477	SBNO2	90	65.512	Cavia_porcellus
ENSAMXG00000015881	si:ch73-63e15.2	84	68.574	ENSCCAG00000037518	SBNO2	92	66.886	Cebus_capucinus
ENSAMXG00000015881	si:ch73-63e15.2	84	68.664	ENSCATG00000037046	SBNO2	88	69.070	Cercocebus_atys
ENSAMXG00000015881	si:ch73-63e15.2	83	68.939	ENSCLAG00000010178	SBNO2	99	69.164	Chinchilla_lanigera
ENSAMXG00000015881	si:ch73-63e15.2	82	68.885	ENSCSAG00000012317	SBNO2	90	65.116	Chlorocebus_sabaeus
ENSAMXG00000015881	si:ch73-63e15.2	85	68.925	ENSCPBG00000008920	SBNO2	90	71.307	Chrysemys_picta_bellii
ENSAMXG00000015881	si:ch73-63e15.2	80	68.700	ENSCANG00000036745	SBNO2	96	68.638	Colobus_angolensis_palliatus
ENSAMXG00000015881	si:ch73-63e15.2	82	67.770	ENSCGRG00001023960	Sbno2	96	61.952	Cricetulus_griseus_chok1gshd
ENSAMXG00000015881	si:ch73-63e15.2	82	69.017	ENSCGRG00000011984	Sbno2	96	63.039	Cricetulus_griseus_crigri
ENSAMXG00000015881	si:ch73-63e15.2	85	76.857	ENSCSEG00000006856	si:ch73-63e15.2	94	81.015	Cynoglossus_semilaevis
ENSAMXG00000015881	si:ch73-63e15.2	93	73.319	ENSCVAG00000005663	si:ch73-63e15.2	88	74.924	Cyprinodon_variegatus
ENSAMXG00000015881	si:ch73-63e15.2	88	73.745	ENSDARG00000098801	sbno2a	96	71.700	Danio_rerio
ENSAMXG00000015881	si:ch73-63e15.2	100	73.060	ENSDARG00000016188	SBNO2	100	73.146	Danio_rerio
ENSAMXG00000015881	si:ch73-63e15.2	82	69.406	ENSDORG00000002916	Sbno2	91	66.237	Dipodomys_ordii
ENSAMXG00000015881	si:ch73-63e15.2	83	68.933	ENSEASG00005021621	SBNO2	89	69.158	Equus_asinus_asinus
ENSAMXG00000015881	si:ch73-63e15.2	83	69.019	ENSECAG00000011827	SBNO2	89	69.416	Equus_caballus
ENSAMXG00000015881	si:ch73-63e15.2	99	71.162	ENSELUG00000020457	si:ch73-63e15.2	89	77.018	Esox_lucius
ENSAMXG00000015881	si:ch73-63e15.2	83	71.318	ENSFALG00000013988	SBNO2	92	67.059	Ficedula_albicollis
ENSAMXG00000015881	si:ch73-63e15.2	80	67.800	ENSFDAG00000015186	SBNO2	85	67.979	Fukomys_damarensis
ENSAMXG00000015881	si:ch73-63e15.2	85	80.239	ENSFHEG00000022262	si:ch73-63e15.2	88	74.773	Fundulus_heteroclitus
ENSAMXG00000015881	si:ch73-63e15.2	82	80.711	ENSGMOG00000007542	si:ch73-63e15.2	94	80.711	Gadus_morhua
ENSAMXG00000015881	si:ch73-63e15.2	99	63.797	ENSGALG00000037522	SBNO2	90	68.019	Gallus_gallus
ENSAMXG00000015881	si:ch73-63e15.2	85	81.026	ENSGAFG00000004860	si:ch73-63e15.2	93	81.368	Gambusia_affinis
ENSAMXG00000015881	si:ch73-63e15.2	82	80.331	ENSGACG00000013190	si:ch73-63e15.2	95	80.260	Gasterosteus_aculeatus
ENSAMXG00000015881	si:ch73-63e15.2	99	63.974	ENSGAGG00000008348	SBNO2	87	71.758	Gopherus_agassizii
ENSAMXG00000015881	si:ch73-63e15.2	88	77.585	ENSHBUG00000010742	si:ch73-63e15.2	86	73.632	Haplochromis_burtoni
ENSAMXG00000015881	si:ch73-63e15.2	82	69.493	ENSHGLG00000008739	SBNO2	91	65.783	Heterocephalus_glaber_female
ENSAMXG00000015881	si:ch73-63e15.2	83	68.900	ENSHGLG00100005269	SBNO2	99	69.124	Heterocephalus_glaber_male
ENSAMXG00000015881	si:ch73-63e15.2	84	79.391	ENSHCOG00000000884	si:ch73-63e15.2	93	75.317	Hippocampus_comes
ENSAMXG00000015881	si:ch73-63e15.2	93	73.047	ENSIPUG00000019672	sbno2	99	75.241	Ictalurus_punctatus
ENSAMXG00000015881	si:ch73-63e15.2	99	79.102	ENSIPUG00000000537	si:ch73-63e15.2	99	78.726	Ictalurus_punctatus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.668	ENSSTOG00000025832	SBNO2	91	66.747	Ictidomys_tridecemlineatus
ENSAMXG00000015881	si:ch73-63e15.2	82	66.609	ENSJJAG00000017397	Sbno2	91	63.878	Jaculus_jaculus
ENSAMXG00000015881	si:ch73-63e15.2	86	79.526	ENSKMAG00000005541	si:ch73-63e15.2	80	78.872	Kryptolebias_marmoratus
ENSAMXG00000015881	si:ch73-63e15.2	86	79.362	ENSLBEG00000025016	si:ch73-63e15.2	95	81.489	Labrus_bergylta
ENSAMXG00000015881	si:ch73-63e15.2	99	73.232	ENSLOCG00000004643	si:ch73-63e15.2	99	73.773	Lepisosteus_oculatus
ENSAMXG00000015881	si:ch73-63e15.2	81	65.724	ENSLAFG00000008824	SBNO2	93	63.598	Loxodonta_africana
ENSAMXG00000015881	si:ch73-63e15.2	84	67.438	ENSMFAG00000040030	SBNO2	91	67.438	Macaca_fascicularis
ENSAMXG00000015881	si:ch73-63e15.2	82	68.885	ENSMMUG00000010886	SBNO2	88	67.857	Macaca_mulatta
ENSAMXG00000015881	si:ch73-63e15.2	84	68.579	ENSMNEG00000039927	SBNO2	89	68.579	Macaca_nemestrina
ENSAMXG00000015881	si:ch73-63e15.2	76	69.859	ENSMLEG00000038556	SBNO2	98	65.714	Mandrillus_leucophaeus
ENSAMXG00000015881	si:ch73-63e15.2	86	81.250	ENSMAMG00000018758	si:ch73-63e15.2	77	81.250	Mastacembelus_armatus
ENSAMXG00000015881	si:ch73-63e15.2	95	72.460	ENSMZEG00005010682	si:ch73-63e15.2	87	71.633	Maylandia_zebra
ENSAMXG00000015881	si:ch73-63e15.2	83	71.502	ENSMGAG00000003801	SBNO2	90	70.965	Meleagris_gallopavo
ENSAMXG00000015881	si:ch73-63e15.2	82	69.413	ENSMAUG00000008034	Sbno2	94	63.895	Mesocricetus_auratus
ENSAMXG00000015881	si:ch73-63e15.2	88	66.153	ENSMICG00000013071	SBNO2	94	66.207	Microcebus_murinus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.418	ENSMOCG00000010504	Sbno2	94	64.018	Microtus_ochrogaster
ENSAMXG00000015881	si:ch73-63e15.2	83	70.573	ENSMODG00000005382	SBNO2	89	66.957	Monodelphis_domestica
ENSAMXG00000015881	si:ch73-63e15.2	68	76.635	ENSMALG00000021831	si:ch73-63e15.2	96	76.635	Monopterus_albus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.137	ENSMUSG00000035673	Sbno2	99	65.889	Mus_musculus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.110	MGP_PahariEiJ_G0030976	Sbno2	94	63.692	Mus_pahari
ENSAMXG00000015881	si:ch73-63e15.2	82	69.197	MGP_SPRETEiJ_G0016381	Sbno2	97	65.648	Mus_spretus
ENSAMXG00000015881	si:ch73-63e15.2	71	71.602	ENSMPUG00000008747	SBNO2	99	66.544	Mustela_putorius_furo
ENSAMXG00000015881	si:ch73-63e15.2	82	68.297	ENSNGAG00000004308	Sbno2	93	65.084	Nannospalax_galili
ENSAMXG00000015881	si:ch73-63e15.2	80	81.096	ENSNBRG00000022968	si:ch73-63e15.2	97	85.234	Neolamprologus_brichardi
ENSAMXG00000015881	si:ch73-63e15.2	79	68.675	ENSNLEG00000001305	SBNO2	87	69.087	Nomascus_leucogenys
ENSAMXG00000015881	si:ch73-63e15.2	68	66.667	ENSMEUG00000013511	-	77	66.667	Notamacropus_eugenii
ENSAMXG00000015881	si:ch73-63e15.2	82	69.156	ENSOPRG00000017238	SBNO2	94	69.298	Ochotona_princeps
ENSAMXG00000015881	si:ch73-63e15.2	82	67.770	ENSODEG00000011822	SBNO2	91	64.435	Octodon_degus
ENSAMXG00000015881	si:ch73-63e15.2	98	77.548	ENSONIG00000002490	si:ch73-63e15.2	98	76.621	Oreochromis_niloticus
ENSAMXG00000015881	si:ch73-63e15.2	99	68.176	ENSORLG00000000913	si:ch73-63e15.2	78	80.899	Oryzias_latipes
ENSAMXG00000015881	si:ch73-63e15.2	96	72.782	ENSORLG00020010978	si:ch73-63e15.2	99	67.281	Oryzias_latipes_hni
ENSAMXG00000015881	si:ch73-63e15.2	99	68.176	ENSORLG00015000202	si:ch73-63e15.2	78	80.899	Oryzias_latipes_hsok
ENSAMXG00000015881	si:ch73-63e15.2	82	80.911	ENSOMEG00000000359	si:ch73-63e15.2	79	77.724	Oryzias_melastigma
ENSAMXG00000015881	si:ch73-63e15.2	82	67.045	ENSOARG00000011130	SBNO2	93	63.469	Ovis_aries
ENSAMXG00000015881	si:ch73-63e15.2	84	67.969	ENSPPAG00000032482	SBNO2	91	67.939	Pan_paniscus
ENSAMXG00000015881	si:ch73-63e15.2	84	68.809	ENSPTRG00000010185	SBNO2	89	68.777	Pan_troglodytes
ENSAMXG00000015881	si:ch73-63e15.2	84	65.240	ENSPANG00000009658	SBNO2	88	65.240	Papio_anubis
ENSAMXG00000015881	si:ch73-63e15.2	86	69.756	ENSPKIG00000009707	-	87	76.058	Paramormyrops_kingsleyae
ENSAMXG00000015881	si:ch73-63e15.2	99	72.230	ENSPKIG00000024201	si:ch73-63e15.2	92	76.228	Paramormyrops_kingsleyae
ENSAMXG00000015881	si:ch73-63e15.2	70	74.236	ENSPSIG00000002852	SBNO2	99	73.394	Pelodiscus_sinensis
ENSAMXG00000015881	si:ch73-63e15.2	84	78.076	ENSPMGG00000014375	si:ch73-63e15.2	89	78.796	Periophthalmus_magnuspinnatus
ENSAMXG00000015881	si:ch73-63e15.2	82	67.367	ENSPEMG00000024122	Sbno2	94	62.548	Peromyscus_maniculatus_bairdii
ENSAMXG00000015881	si:ch73-63e15.2	79	72.398	ENSPCIG00000011264	SBNO2	89	67.331	Phascolarctos_cinereus
ENSAMXG00000015881	si:ch73-63e15.2	84	81.006	ENSPFOG00000004096	si:ch73-63e15.2	99	79.634	Poecilia_formosa
ENSAMXG00000015881	si:ch73-63e15.2	85	80.973	ENSPLAG00000014653	si:ch73-63e15.2	89	74.548	Poecilia_latipinna
ENSAMXG00000015881	si:ch73-63e15.2	85	80.973	ENSPMEG00000002129	si:ch73-63e15.2	96	77.551	Poecilia_mexicana
ENSAMXG00000015881	si:ch73-63e15.2	84	80.833	ENSPREG00000006755	si:ch73-63e15.2	89	71.722	Poecilia_reticulata
ENSAMXG00000015881	si:ch73-63e15.2	83	64.762	ENSPCAG00000012256	SBNO2	83	64.965	Procavia_capensis
ENSAMXG00000015881	si:ch73-63e15.2	83	62.651	ENSPCOG00000015216	SBNO2	88	63.140	Propithecus_coquereli
ENSAMXG00000015881	si:ch73-63e15.2	89	77.687	ENSPNYG00000019926	si:ch73-63e15.2	85	74.561	Pundamilia_nyererei
ENSAMXG00000015881	si:ch73-63e15.2	99	85.860	ENSPNAG00000020260	si:ch73-63e15.2	100	85.974	Pygocentrus_nattereri
ENSAMXG00000015881	si:ch73-63e15.2	96	70.043	ENSPNAG00000026609	sbno2a	99	68.612	Pygocentrus_nattereri
ENSAMXG00000015881	si:ch73-63e15.2	84	68.349	ENSRNOG00000013987	Sbno2	94	66.313	Rattus_norvegicus
ENSAMXG00000015881	si:ch73-63e15.2	81	65.402	ENSRBIG00000009740	SBNO2	92	65.463	Rhinopithecus_bieti
ENSAMXG00000015881	si:ch73-63e15.2	73	71.635	ENSRROG00000044671	SBNO2	86	71.635	Rhinopithecus_roxellana
ENSAMXG00000015881	si:ch73-63e15.2	84	68.353	ENSSBOG00000023562	SBNO2	90	68.322	Saimiri_boliviensis_boliviensis
ENSAMXG00000015881	si:ch73-63e15.2	81	70.833	ENSSHAG00000010241	SBNO2	97	70.896	Sarcophilus_harrisii
ENSAMXG00000015881	si:ch73-63e15.2	98	69.029	ENSSFOG00015005861	si:ch73-63e15.2	99	77.769	Scleropages_formosus
ENSAMXG00000015881	si:ch73-63e15.2	85	80.697	ENSSMAG00000012489	si:ch73-63e15.2	76	80.697	Scophthalmus_maximus
ENSAMXG00000015881	si:ch73-63e15.2	85	81.702	ENSSDUG00000003527	si:ch73-63e15.2	76	81.702	Seriola_dumerili
ENSAMXG00000015881	si:ch73-63e15.2	85	81.362	ENSSLDG00000004623	si:ch73-63e15.2	76	81.362	Seriola_lalandi_dorsalis
ENSAMXG00000015881	si:ch73-63e15.2	87	81.083	ENSSPAG00000017717	si:ch73-63e15.2	79	81.083	Stegastes_partitus
ENSAMXG00000015881	si:ch73-63e15.2	83	69.449	ENSSSCG00000030042	SBNO2	90	69.244	Sus_scrofa
ENSAMXG00000015881	si:ch73-63e15.2	80	80.289	ENSTRUG00000018193	si:ch73-63e15.2	86	80.289	Takifugu_rubripes
ENSAMXG00000015881	si:ch73-63e15.2	75	70.363	ENSUAMG00000006568	SBNO2	91	74.406	Ursus_americanus
ENSAMXG00000015881	si:ch73-63e15.2	82	69.904	ENSVVUG00000022823	SBNO2	89	66.640	Vulpes_vulpes
ENSAMXG00000015881	si:ch73-63e15.2	75	76.162	ENSXETG00000021579	sbno2	90	76.162	Xenopus_tropicalis
ENSAMXG00000015881	si:ch73-63e15.2	72	81.250	ENSXCOG00000009209	si:ch73-63e15.2	91	82.340	Xiphophorus_couchianus
ENSAMXG00000015881	si:ch73-63e15.2	85	80.802	ENSXMAG00000012091	si:ch73-63e15.2	83	83.716	Xiphophorus_maculatus