EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000016318 (Gene tree)
Gene ID: 103026608
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 285286 bases
Position: chr7:15269169-15554454
Accession: 103026608
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000035154	TUDOR	PF00567.24	1.9e-25	1	1
ENSAMXP00000016809	TUDOR	PF00567.24	2e-25	1	1
ENSAMXP00000035154	SNase	PF00565.17	2.1e-68	1	4
ENSAMXP00000035154	SNase	PF00565.17	2.1e-68	2	4
ENSAMXP00000035154	SNase	PF00565.17	2.1e-68	3	4
ENSAMXP00000035154	SNase	PF00565.17	2.1e-68	4	4
ENSAMXP00000016809	SNase	PF00565.17	2.5e-63	1	4
ENSAMXP00000016809	SNase	PF00565.17	2.5e-63	2	4
ENSAMXP00000016809	SNase	PF00565.17	2.5e-63	3	4
ENSAMXP00000016809	SNase	PF00565.17	2.5e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000016809	-	5243	-	ENSAMXP00000016809	897 (aa)	-	W5LAE7
ENSAMXT00000036516	-	5288	XM_022671391	ENSAMXP00000035154	912 (aa)	XP_022527112	UPI000BBD4A89

Gene Model

Click here to download ENSAMXG00000016318's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016318's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016318	snd1	98	84.744	ENSG00000197157	SND1	99	84.158	Homo_sapiens
ENSAMXG00000016318	snd1	99	90.659	ENSAPOG00000017599	snd1	99	90.659	Acanthochromis_polyacanthus
ENSAMXG00000016318	snd1	99	84.303	ENSAMEG00000004664	SND1	94	84.303	Ailuropoda_melanoleuca
ENSAMXG00000016318	snd1	99	87.363	ENSACIG00000003551	snd1	99	87.363	Amphilophus_citrinellus
ENSAMXG00000016318	snd1	99	90.879	ENSAOCG00000014166	snd1	99	90.879	Amphiprion_ocellaris
ENSAMXG00000016318	snd1	99	90.879	ENSAPEG00000007067	snd1	99	90.879	Amphiprion_percula
ENSAMXG00000016318	snd1	98	89.362	ENSATEG00000018475	snd1	89	89.362	Anabas_testudineus
ENSAMXG00000016318	snd1	98	84.855	ENSANAG00000034463	SND1	99	84.910	Aotus_nancymaae
ENSAMXG00000016318	snd1	99	90.220	ENSACLG00000022897	snd1	99	90.220	Astatotilapia_calliptera
ENSAMXG00000016318	snd1	98	84.855	ENSBTAG00000010692	SND1	99	84.268	Bos_taurus
ENSAMXG00000016318	snd1	99	46.467	WBGene00006626	tsn-1	99	46.788	Caenorhabditis_elegans
ENSAMXG00000016318	snd1	98	84.855	ENSCJAG00000017668	SND1	99	84.910	Callithrix_jacchus
ENSAMXG00000016318	snd1	99	84.268	ENSCAFG00000001700	SND1	99	84.268	Canis_familiaris
ENSAMXG00000016318	snd1	99	84.268	ENSCAFG00020021639	SND1	99	84.268	Canis_lupus_dingo
ENSAMXG00000016318	snd1	98	84.744	ENSCHIG00000023390	SND1	99	84.158	Capra_hircus
ENSAMXG00000016318	snd1	74	87.762	ENSTSYG00000004979	SND1	96	87.762	Carlito_syrichta
ENSAMXG00000016318	snd1	98	73.807	ENSCAPG00000010677	SND1	98	73.807	Cavia_aperea
ENSAMXG00000016318	snd1	98	84.521	ENSCPOG00000006251	SND1	99	83.938	Cavia_porcellus
ENSAMXG00000016318	snd1	98	84.855	ENSCCAG00000036847	SND1	100	83.664	Cebus_capucinus
ENSAMXG00000016318	snd1	98	84.967	ENSCATG00000035214	SND1	99	85.023	Cercocebus_atys
ENSAMXG00000016318	snd1	98	84.744	ENSCLAG00000011796	SND1	97	86.509	Chinchilla_lanigera
ENSAMXG00000016318	snd1	98	84.967	ENSCSAG00000010182	SND1	99	84.378	Chlorocebus_sabaeus
ENSAMXG00000016318	snd1	79	73.267	ENSCHOG00000002218	SND1	86	73.267	Choloepus_hoffmanni
ENSAMXG00000016318	snd1	100	84.136	ENSCPBG00000018094	SND1	100	84.136	Chrysemys_picta_bellii
ENSAMXG00000016318	snd1	98	56.670	ENSCING00000000524	-	99	56.135	Ciona_intestinalis
ENSAMXG00000016318	snd1	99	57.190	ENSCSAVG00000008807	-	99	57.190	Ciona_savignyi
ENSAMXG00000016318	snd1	98	84.967	ENSCANG00000035119	SND1	99	84.378	Colobus_angolensis_palliatus
ENSAMXG00000016318	snd1	98	84.410	ENSCGRG00001022514	Snd1	98	85.284	Cricetulus_griseus_chok1gshd
ENSAMXG00000016318	snd1	97	84.459	ENSCGRG00000012277	Snd1	99	84.459	Cricetulus_griseus_crigri
ENSAMXG00000016318	snd1	99	88.571	ENSCSEG00000008661	snd1	99	88.571	Cynoglossus_semilaevis
ENSAMXG00000016318	snd1	99	89.890	ENSCVAG00000010316	snd1	100	89.106	Cyprinodon_variegatus
ENSAMXG00000016318	snd1	100	91.138	ENSDARG00000006766	snd1	98	93.761	Danio_rerio
ENSAMXG00000016318	snd1	97	82.716	ENSDNOG00000006795	SND1	100	82.716	Dasypus_novemcinctus
ENSAMXG00000016318	snd1	98	84.633	ENSDORG00000000336	Snd1	99	84.048	Dipodomys_ordii
ENSAMXG00000016318	snd1	98	50.162	FBgn0035121	Tudor-SN	99	49.786	Drosophila_melanogaster
ENSAMXG00000016318	snd1	90	90.476	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSAMXG00000016318	snd1	58	67.560	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSAMXG00000016318	snd1	98	83.790	ENSEASG00005008513	SND1	99	83.225	Equus_asinus_asinus
ENSAMXG00000016318	snd1	98	84.967	ENSECAG00000011451	SND1	99	84.378	Equus_caballus
ENSAMXG00000016318	snd1	98	75.278	ENSEEUG00000014737	SND1	100	74.645	Erinaceus_europaeus
ENSAMXG00000016318	snd1	99	89.266	ENSELUG00000001805	snd1	97	89.266	Esox_lucius
ENSAMXG00000016318	snd1	99	84.598	ENSFCAG00000008289	SND1	99	84.598	Felis_catus
ENSAMXG00000016318	snd1	98	84.521	ENSFDAG00000015881	SND1	99	84.048	Fukomys_damarensis
ENSAMXG00000016318	snd1	99	88.172	ENSFHEG00000004093	snd1	99	89.931	Fundulus_heteroclitus
ENSAMXG00000016318	snd1	64	81.921	ENSGMOG00000018932	snd1	66	81.921	Gadus_morhua
ENSAMXG00000016318	snd1	99	90.440	ENSGAFG00000008421	snd1	99	91.001	Gambusia_affinis
ENSAMXG00000016318	snd1	99	57.872	ENSGACG00000019793	snd1	99	57.918	Gasterosteus_aculeatus
ENSAMXG00000016318	snd1	98	84.967	ENSGGOG00000009614	SND1	99	85.023	Gorilla_gorilla
ENSAMXG00000016318	snd1	99	90.110	ENSHBUG00000019135	snd1	99	90.110	Haplochromis_burtoni
ENSAMXG00000016318	snd1	98	84.410	ENSHGLG00000003618	SND1	97	86.003	Heterocephalus_glaber_female
ENSAMXG00000016318	snd1	98	84.410	ENSHGLG00100012449	SND1	99	84.410	Heterocephalus_glaber_male
ENSAMXG00000016318	snd1	99	88.352	ENSHCOG00000005266	snd1	99	88.352	Hippocampus_comes
ENSAMXG00000016318	snd1	100	93.092	ENSIPUG00000013279	snd1	100	93.092	Ictalurus_punctatus
ENSAMXG00000016318	snd1	98	84.744	ENSSTOG00000002140	SND1	99	84.158	Ictidomys_tridecemlineatus
ENSAMXG00000016318	snd1	98	84.744	ENSJJAG00000009561	Snd1	99	84.158	Jaculus_jaculus
ENSAMXG00000016318	snd1	99	90.549	ENSKMAG00000016997	snd1	99	90.549	Kryptolebias_marmoratus
ENSAMXG00000016318	snd1	99	91.582	ENSLBEG00000013563	snd1	99	90.110	Labrus_bergylta
ENSAMXG00000016318	snd1	98	89.183	ENSLOCG00000015537	snd1	100	88.478	Lepisosteus_oculatus
ENSAMXG00000016318	snd1	100	83.917	ENSLAFG00000009696	SND1	100	83.917	Loxodonta_africana
ENSAMXG00000016318	snd1	98	84.967	ENSMFAG00000038114	SND1	99	85.023	Macaca_fascicularis
ENSAMXG00000016318	snd1	98	84.967	ENSMMUG00000015432	SND1	99	84.378	Macaca_mulatta
ENSAMXG00000016318	snd1	98	84.967	ENSMNEG00000039808	SND1	100	85.039	Macaca_nemestrina
ENSAMXG00000016318	snd1	98	84.855	ENSMLEG00000029040	SND1	100	84.927	Mandrillus_leucophaeus
ENSAMXG00000016318	snd1	99	89.890	ENSMAMG00000011739	snd1	99	89.890	Mastacembelus_armatus
ENSAMXG00000016318	snd1	99	90.220	ENSMZEG00005005681	snd1	99	90.220	Maylandia_zebra
ENSAMXG00000016318	snd1	98	84.744	ENSMICG00000000097	SND1	99	84.158	Microcebus_murinus
ENSAMXG00000016318	snd1	98	84.967	ENSMOCG00000005040	Snd1	99	84.378	Microtus_ochrogaster
ENSAMXG00000016318	snd1	99	89.780	ENSMMOG00000001795	snd1	99	89.780	Mola_mola
ENSAMXG00000016318	snd1	98	84.298	ENSMODG00000015182	SND1	99	83.718	Monodelphis_domestica
ENSAMXG00000016318	snd1	99	90.549	ENSMALG00000012071	snd1	99	90.549	Monopterus_albus
ENSAMXG00000016318	snd1	98	84.521	MGP_CAROLIEiJ_G0028159	Snd1	99	85.427	Mus_caroli
ENSAMXG00000016318	snd1	98	84.298	ENSMUSG00000001424	Snd1	100	83.260	Mus_musculus
ENSAMXG00000016318	snd1	98	84.521	MGP_PahariEiJ_G0021917	Snd1	100	85.427	Mus_pahari
ENSAMXG00000016318	snd1	98	84.521	MGP_SPRETEiJ_G0029159	Snd1	100	83.479	Mus_spretus
ENSAMXG00000016318	snd1	99	84.158	ENSMPUG00000006545	SND1	99	84.158	Mustela_putorius_furo
ENSAMXG00000016318	snd1	97	83.871	ENSMLUG00000017130	SND1	99	83.871	Myotis_lucifugus
ENSAMXG00000016318	snd1	98	84.967	ENSNGAG00000011186	Snd1	99	84.378	Nannospalax_galili
ENSAMXG00000016318	snd1	99	90.110	ENSNBRG00000006681	snd1	99	90.110	Neolamprologus_brichardi
ENSAMXG00000016318	snd1	99	84.378	ENSNLEG00000012263	SND1	100	85.039	Nomascus_leucogenys
ENSAMXG00000016318	snd1	91	90.476	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSAMXG00000016318	snd1	98	84.855	ENSODEG00000011502	SND1	100	83.807	Octodon_degus
ENSAMXG00000016318	snd1	99	90.330	ENSONIG00000011481	snd1	97	90.330	Oreochromis_niloticus
ENSAMXG00000016318	snd1	98	83.857	ENSOANG00000000817	SND1	98	83.408	Ornithorhynchus_anatinus
ENSAMXG00000016318	snd1	99	83.718	ENSOCUG00000001620	SND1	99	83.718	Oryctolagus_cuniculus
ENSAMXG00000016318	snd1	98	89.955	ENSORLG00000015201	snd1	99	89.231	Oryzias_latipes
ENSAMXG00000016318	snd1	98	90.179	ENSORLG00020013991	snd1	99	89.451	Oryzias_latipes_hni
ENSAMXG00000016318	snd1	98	90.179	ENSORLG00015012436	snd1	99	89.451	Oryzias_latipes_hsok
ENSAMXG00000016318	snd1	99	89.670	ENSOMEG00000006406	snd1	99	89.670	Oryzias_melastigma
ENSAMXG00000016318	snd1	98	84.556	ENSOGAG00000013356	SND1	94	83.974	Otolemur_garnettii
ENSAMXG00000016318	snd1	97	82.452	ENSOARG00000002149	SND1	100	82.452	Ovis_aries
ENSAMXG00000016318	snd1	98	84.855	ENSPPAG00000042947	SND1	99	84.298	Pan_paniscus
ENSAMXG00000016318	snd1	99	84.598	ENSPPRG00000004494	SND1	99	84.598	Panthera_pardus
ENSAMXG00000016318	snd1	99	84.488	ENSPTIG00000014214	SND1	99	84.488	Panthera_tigris_altaica
ENSAMXG00000016318	snd1	98	84.855	ENSPTRG00000023911	SND1	99	84.910	Pan_troglodytes
ENSAMXG00000016318	snd1	97	85.023	ENSPANG00000011997	SND1	99	85.023	Papio_anubis
ENSAMXG00000016318	snd1	99	87.996	ENSPKIG00000023494	snd1	100	87.378	Paramormyrops_kingsleyae
ENSAMXG00000016318	snd1	93	89.857	ENSPMGG00000003629	snd1	100	89.976	Periophthalmus_magnuspinnatus
ENSAMXG00000016318	snd1	98	84.744	ENSPEMG00000010240	Snd1	99	84.158	Peromyscus_maniculatus_bairdii
ENSAMXG00000016318	snd1	97	73.874	ENSPMAG00000007915	-	99	73.874	Petromyzon_marinus
ENSAMXG00000016318	snd1	98	84.855	ENSPCIG00000011561	SND1	99	84.268	Phascolarctos_cinereus
ENSAMXG00000016318	snd1	99	90.220	ENSPFOG00000001557	snd1	99	90.220	Poecilia_formosa
ENSAMXG00000016318	snd1	99	90.330	ENSPLAG00000018459	snd1	97	90.330	Poecilia_latipinna
ENSAMXG00000016318	snd1	99	90.440	ENSPMEG00000006803	snd1	99	90.440	Poecilia_mexicana
ENSAMXG00000016318	snd1	99	90.110	ENSPREG00000002189	snd1	99	90.110	Poecilia_reticulata
ENSAMXG00000016318	snd1	91	88.889	ENSPPYG00000017972	SND1	99	88.889	Pongo_abelii
ENSAMXG00000016318	snd1	98	74.610	ENSPCAG00000011305	SND1	100	73.989	Procavia_capensis
ENSAMXG00000016318	snd1	98	84.744	ENSPCOG00000026791	SND1	100	84.814	Propithecus_coquereli
ENSAMXG00000016318	snd1	98	82.739	ENSPVAG00000013945	SND1	99	82.178	Pteropus_vampyrus
ENSAMXG00000016318	snd1	99	90.110	ENSPNYG00000000932	snd1	99	90.110	Pundamilia_nyererei
ENSAMXG00000016318	snd1	100	95.175	ENSPNAG00000001206	snd1	100	95.175	Pygocentrus_nattereri
ENSAMXG00000016318	snd1	98	84.187	ENSRNOG00000031173	Snd1	100	83.465	Rattus_norvegicus
ENSAMXG00000016318	snd1	74	88.060	ENSRBIG00000027782	-	93	88.113	Rhinopithecus_bieti
ENSAMXG00000016318	snd1	100	83.042	ENSRROG00000033020	SND1	99	84.378	Rhinopithecus_roxellana
ENSAMXG00000016318	snd1	98	84.744	ENSSBOG00000032461	SND1	99	84.797	Saimiri_boliviensis_boliviensis
ENSAMXG00000016318	snd1	98	81.250	ENSSHAG00000015359	SND1	100	81.250	Sarcophilus_harrisii
ENSAMXG00000016318	snd1	98	89.900	ENSSFOG00015001103	snd1	100	89.119	Scleropages_formosus
ENSAMXG00000016318	snd1	98	90.513	ENSSMAG00000001932	snd1	94	89.670	Scophthalmus_maximus
ENSAMXG00000016318	snd1	99	90.330	ENSSDUG00000002699	snd1	93	90.330	Seriola_dumerili
ENSAMXG00000016318	snd1	99	82.967	ENSSLDG00000001950	snd1	99	82.967	Seriola_lalandi_dorsalis
ENSAMXG00000016318	snd1	88	81.132	ENSSARG00000004877	SND1	92	81.132	Sorex_araneus
ENSAMXG00000016318	snd1	63	80.656	ENSSPUG00000017586	SND1	96	80.656	Sphenodon_punctatus
ENSAMXG00000016318	snd1	77	90.847	ENSSPAG00000021398	snd1	98	90.847	Stegastes_partitus
ENSAMXG00000016318	snd1	98	84.967	ENSSSCG00000016590	SND1	99	84.378	Sus_scrofa
ENSAMXG00000016318	snd1	99	89.130	ENSTRUG00000014067	snd1	99	89.011	Takifugu_rubripes
ENSAMXG00000016318	snd1	99	89.121	ENSTNIG00000011019	snd1	99	89.121	Tetraodon_nigroviridis
ENSAMXG00000016318	snd1	95	79.225	ENSTBEG00000003999	SND1	100	79.225	Tupaia_belangeri
ENSAMXG00000016318	snd1	98	80.735	ENSTTRG00000006059	SND1	99	80.198	Tursiops_truncatus
ENSAMXG00000016318	snd1	72	77.249	ENSUAMG00000002820	-	87	77.249	Ursus_americanus
ENSAMXG00000016318	snd1	87	84.280	ENSUAMG00000005604	-	93	84.280	Ursus_americanus
ENSAMXG00000016318	snd1	99	84.378	ENSUMAG00000005960	SND1	99	84.378	Ursus_maritimus
ENSAMXG00000016318	snd1	77	90.476	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSAMXG00000016318	snd1	99	84.268	ENSVVUG00000007226	SND1	99	84.268	Vulpes_vulpes
ENSAMXG00000016318	snd1	97	79.865	ENSXETG00000023043	snd1	100	79.841	Xenopus_tropicalis
ENSAMXG00000016318	snd1	93	88.053	ENSXCOG00000013629	snd1	99	87.559	Xiphophorus_couchianus
ENSAMXG00000016318	snd1	99	90.659	ENSXMAG00000011469	snd1	99	90.659	Xiphophorus_maculatus