EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000016364 (Gene tree)
Gene ID: 103040430
Gene Symbol: NCBP1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 11216 bases
Position: chrAPWO02000111.1:12075-23290
Accession: 103040430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000016845	MIF4G_like	PF09088.11	2.8e-37	1	1
ENSAMXP00000016845	MIF4G_like_2	PF09090.11	1.1e-85	1	1
ENSAMXP00000016845	MIF4G	PF02854.19	1.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000016845	NCBP1-201	3067	XM_007228028	ENSAMXP00000016845	797 (aa)	XP_007228090	W5LAI3

Gene Model

Click here to download ENSAMXG00000016364's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016364's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016364	NCBP1	99	81.281	ENSG00000136937	NCBP1	99	81.784	Homo_sapiens
ENSAMXG00000016364	NCBP1	100	91.719	ENSAPOG00000008002	NCBP1	100	91.719	Acanthochromis_polyacanthus
ENSAMXG00000016364	NCBP1	99	81.454	ENSAMEG00000004763	NCBP1	99	81.955	Ailuropoda_melanoleuca
ENSAMXG00000016364	NCBP1	100	90.966	ENSACIG00000000274	NCBP1	100	90.966	Amphilophus_citrinellus
ENSAMXG00000016364	NCBP1	100	91.593	ENSAOCG00000021148	NCBP1	100	91.593	Amphiprion_ocellaris
ENSAMXG00000016364	NCBP1	100	91.593	ENSAPEG00000001701	NCBP1	100	91.593	Amphiprion_percula
ENSAMXG00000016364	NCBP1	100	91.719	ENSATEG00000006929	NCBP1	100	91.719	Anabas_testudineus
ENSAMXG00000016364	NCBP1	95	82.677	ENSAPLG00000016318	NCBP1	99	82.940	Anas_platyrhynchos
ENSAMXG00000016364	NCBP1	99	82.250	ENSACAG00000004409	NCBP1	87	82.419	Anolis_carolinensis
ENSAMXG00000016364	NCBP1	99	79.271	ENSANAG00000025744	NCBP1	99	81.155	Aotus_nancymaae
ENSAMXG00000016364	NCBP1	100	90.590	ENSACLG00000014812	NCBP1	100	90.590	Astatotilapia_calliptera
ENSAMXG00000016364	NCBP1	99	81.533	ENSBTAG00000009732	NCBP1	99	88.218	Bos_taurus
ENSAMXG00000016364	NCBP1	100	35.172	WBGene00018156	ncbp-1	100	35.049	Caenorhabditis_elegans
ENSAMXG00000016364	NCBP1	99	81.407	ENSCJAG00000010840	NCBP1	99	85.952	Callithrix_jacchus
ENSAMXG00000016364	NCBP1	99	81.533	ENSCAFG00000002445	NCBP1	99	82.035	Canis_familiaris
ENSAMXG00000016364	NCBP1	98	81.250	ENSCAFG00020017997	NCBP1	96	88.060	Canis_lupus_dingo
ENSAMXG00000016364	NCBP1	99	81.407	ENSCHIG00000020139	NCBP1	99	81.910	Capra_hircus
ENSAMXG00000016364	NCBP1	51	87.407	ENSTSYG00000011914	NCBP1	98	87.147	Carlito_syrichta
ENSAMXG00000016364	NCBP1	81	73.765	ENSCAPG00000014252	NCBP1	90	73.765	Cavia_aperea
ENSAMXG00000016364	NCBP1	95	80.501	ENSCPOG00000012573	NCBP1	98	81.028	Cavia_porcellus
ENSAMXG00000016364	NCBP1	99	81.281	ENSCCAG00000032297	NCBP1	99	81.784	Cebus_capucinus
ENSAMXG00000016364	NCBP1	99	81.281	ENSCATG00000010052	NCBP1	99	81.784	Cercocebus_atys
ENSAMXG00000016364	NCBP1	99	81.281	ENSCLAG00000014339	NCBP1	99	81.784	Chinchilla_lanigera
ENSAMXG00000016364	NCBP1	99	81.281	ENSCSAG00000010929	NCBP1	99	81.784	Chlorocebus_sabaeus
ENSAMXG00000016364	NCBP1	89	80.189	ENSCHOG00000010332	NCBP1	91	75.652	Choloepus_hoffmanni
ENSAMXG00000016364	NCBP1	99	81.407	ENSCPBG00000024344	NCBP1	99	83.356	Chrysemys_picta_bellii
ENSAMXG00000016364	NCBP1	99	54.397	ENSCING00000008990	-	99	54.397	Ciona_intestinalis
ENSAMXG00000016364	NCBP1	99	53.741	ENSCSAVG00000005300	-	99	54.082	Ciona_savignyi
ENSAMXG00000016364	NCBP1	99	81.281	ENSCANG00000036913	NCBP1	99	81.784	Colobus_angolensis_palliatus
ENSAMXG00000016364	NCBP1	99	80.905	ENSCGRG00001015771	Ncbp1	99	81.407	Cricetulus_griseus_chok1gshd
ENSAMXG00000016364	NCBP1	99	80.789	ENSCGRG00000010311	Ncbp1	99	81.298	Cricetulus_griseus_crigri
ENSAMXG00000016364	NCBP1	100	90.590	ENSCSEG00000012377	NCBP1	100	90.590	Cynoglossus_semilaevis
ENSAMXG00000016364	NCBP1	100	90.715	ENSCVAG00000008795	NCBP1	100	90.715	Cyprinodon_variegatus
ENSAMXG00000016364	NCBP1	99	80.779	ENSDNOG00000006885	NCBP1	99	81.281	Dasypus_novemcinctus
ENSAMXG00000016364	NCBP1	99	77.375	ENSDORG00000013652	Ncbp1	99	77.875	Dipodomys_ordii
ENSAMXG00000016364	NCBP1	99	56.946	FBgn0022942	Cbp80	99	56.946	Drosophila_melanogaster
ENSAMXG00000016364	NCBP1	82	33.284	FBgn0038887	CG7907	87	33.333	Drosophila_melanogaster
ENSAMXG00000016364	NCBP1	89	76.940	ENSETEG00000009705	NCBP1	89	76.940	Echinops_telfairi
ENSAMXG00000016364	NCBP1	99	72.522	ENSEBUG00000008386	NCBP1	99	72.522	Eptatretus_burgeri
ENSAMXG00000016364	NCBP1	99	81.030	ENSEASG00005022795	NCBP1	99	81.533	Equus_asinus_asinus
ENSAMXG00000016364	NCBP1	99	81.156	ENSECAG00000013847	NCBP1	99	81.658	Equus_caballus
ENSAMXG00000016364	NCBP1	95	77.866	ENSEEUG00000015973	NCBP1	99	78.261	Erinaceus_europaeus
ENSAMXG00000016364	NCBP1	100	91.343	ENSELUG00000022519	NCBP1	100	91.343	Esox_lucius
ENSAMXG00000016364	NCBP1	99	81.407	ENSFCAG00000001206	NCBP1	99	81.910	Felis_catus
ENSAMXG00000016364	NCBP1	98	83.863	ENSFALG00000001193	NCBP1	99	83.863	Ficedula_albicollis
ENSAMXG00000016364	NCBP1	99	81.030	ENSFDAG00000010864	NCBP1	99	81.533	Fukomys_damarensis
ENSAMXG00000016364	NCBP1	100	90.966	ENSFHEG00000000655	NCBP1	100	90.966	Fundulus_heteroclitus
ENSAMXG00000016364	NCBP1	100	88.582	ENSGMOG00000008653	NCBP1	99	88.582	Gadus_morhua
ENSAMXG00000016364	NCBP1	98	83.673	ENSGALG00000002087	NCBP1	99	83.584	Gallus_gallus
ENSAMXG00000016364	NCBP1	100	91.468	ENSGAFG00000017787	NCBP1	100	91.468	Gambusia_affinis
ENSAMXG00000016364	NCBP1	100	90.238	ENSGACG00000016772	NCBP1	99	90.238	Gasterosteus_aculeatus
ENSAMXG00000016364	NCBP1	99	83.668	ENSGAGG00000019483	NCBP1	99	83.668	Gopherus_agassizii
ENSAMXG00000016364	NCBP1	99	81.281	ENSGGOG00000001376	NCBP1	99	81.784	Gorilla_gorilla
ENSAMXG00000016364	NCBP1	100	90.590	ENSHBUG00000020843	NCBP1	100	90.590	Haplochromis_burtoni
ENSAMXG00000016364	NCBP1	99	71.178	ENSHGLG00000018112	-	99	71.178	Heterocephalus_glaber_female
ENSAMXG00000016364	NCBP1	99	81.281	ENSHGLG00000001882	NCBP1	99	81.784	Heterocephalus_glaber_female
ENSAMXG00000016364	NCBP1	99	81.281	ENSHGLG00100013014	NCBP1	99	81.784	Heterocephalus_glaber_male
ENSAMXG00000016364	NCBP1	99	70.927	ENSHGLG00100017373	-	99	70.927	Heterocephalus_glaber_male
ENSAMXG00000016364	NCBP1	75	84.343	ENSHCOG00000000204	NCBP1	87	84.343	Hippocampus_comes
ENSAMXG00000016364	NCBP1	100	94.103	ENSIPUG00000007275	ncbp1	100	94.103	Ictalurus_punctatus
ENSAMXG00000016364	NCBP1	99	81.407	ENSSTOG00000002695	NCBP1	99	81.910	Ictidomys_tridecemlineatus
ENSAMXG00000016364	NCBP1	100	89.962	ENSKMAG00000003594	NCBP1	99	91.242	Kryptolebias_marmoratus
ENSAMXG00000016364	NCBP1	100	89.604	ENSLBEG00000011661	NCBP1	100	89.604	Labrus_bergylta
ENSAMXG00000016364	NCBP1	99	76.712	ENSLACG00000013955	NCBP1	99	76.741	Latimeria_chalumnae
ENSAMXG00000016364	NCBP1	99	78.509	ENSLOCG00000009579	NCBP1	99	78.509	Lepisosteus_oculatus
ENSAMXG00000016364	NCBP1	99	81.156	ENSLAFG00000005999	NCBP1	99	81.658	Loxodonta_africana
ENSAMXG00000016364	NCBP1	99	81.281	ENSMFAG00000030994	NCBP1	99	81.784	Macaca_fascicularis
ENSAMXG00000016364	NCBP1	98	81.019	ENSMMUG00000012281	NCBP1	99	81.529	Macaca_mulatta
ENSAMXG00000016364	NCBP1	99	81.281	ENSMNEG00000042790	NCBP1	99	81.784	Macaca_nemestrina
ENSAMXG00000016364	NCBP1	99	81.281	ENSMLEG00000030374	NCBP1	99	81.784	Mandrillus_leucophaeus
ENSAMXG00000016364	NCBP1	100	91.092	ENSMAMG00000014806	NCBP1	100	91.092	Mastacembelus_armatus
ENSAMXG00000016364	NCBP1	100	90.590	ENSMZEG00005003469	NCBP1	100	90.590	Maylandia_zebra
ENSAMXG00000016364	NCBP1	97	88.273	ENSMZEG00005009290	-	100	88.273	Maylandia_zebra
ENSAMXG00000016364	NCBP1	99	80.303	ENSMAUG00000020583	Ncbp1	99	80.808	Mesocricetus_auratus
ENSAMXG00000016364	NCBP1	99	80.779	ENSMICG00000012682	NCBP1	99	81.281	Microcebus_murinus
ENSAMXG00000016364	NCBP1	99	80.779	ENSMOCG00000015818	Ncbp1	99	81.281	Microtus_ochrogaster
ENSAMXG00000016364	NCBP1	91	89.073	ENSMMOG00000002610	NCBP1	100	89.073	Mola_mola
ENSAMXG00000016364	NCBP1	99	81.281	ENSMODG00000003202	NCBP1	99	81.281	Monodelphis_domestica
ENSAMXG00000016364	NCBP1	100	91.092	ENSMALG00000003547	NCBP1	100	91.092	Monopterus_albus
ENSAMXG00000016364	NCBP1	99	81.156	MGP_CAROLIEiJ_G0025982	Ncbp1	99	81.658	Mus_caroli
ENSAMXG00000016364	NCBP1	99	81.156	ENSMUSG00000028330	Ncbp1	99	81.658	Mus_musculus
ENSAMXG00000016364	NCBP1	99	81.156	MGP_PahariEiJ_G0028318	Ncbp1	99	81.658	Mus_pahari
ENSAMXG00000016364	NCBP1	99	81.156	MGP_SPRETEiJ_G0026945	Ncbp1	99	81.658	Mus_spretus
ENSAMXG00000016364	NCBP1	99	81.658	ENSMPUG00000006399	NCBP1	99	82.161	Mustela_putorius_furo
ENSAMXG00000016364	NCBP1	98	80.255	ENSMLUG00000015201	NCBP1	99	80.764	Myotis_lucifugus
ENSAMXG00000016364	NCBP1	99	81.407	ENSNGAG00000014101	Ncbp1	99	81.407	Nannospalax_galili
ENSAMXG00000016364	NCBP1	74	94.273	ENSNBRG00000014674	NCBP1	94	94.273	Neolamprologus_brichardi
ENSAMXG00000016364	NCBP1	99	81.281	ENSNLEG00000016909	NCBP1	99	81.784	Nomascus_leucogenys
ENSAMXG00000016364	NCBP1	89	81.590	ENSMEUG00000010672	NCBP1	90	81.590	Notamacropus_eugenii
ENSAMXG00000016364	NCBP1	84	73.658	ENSOPRG00000002144	-	88	74.329	Ochotona_princeps
ENSAMXG00000016364	NCBP1	99	81.156	ENSODEG00000003232	NCBP1	99	81.658	Octodon_degus
ENSAMXG00000016364	NCBP1	100	90.590	ENSONIG00000001502	NCBP1	100	90.590	Oreochromis_niloticus
ENSAMXG00000016364	NCBP1	78	85.393	ENSOANG00000001918	NCBP1	100	85.393	Ornithorhynchus_anatinus
ENSAMXG00000016364	NCBP1	98	80.818	ENSOCUG00000013853	NCBP1	97	81.330	Oryctolagus_cuniculus
ENSAMXG00000016364	NCBP1	100	90.875	ENSORLG00000011008	NCBP1	100	90.875	Oryzias_latipes
ENSAMXG00000016364	NCBP1	100	91.125	ENSORLG00020017455	NCBP1	100	91.125	Oryzias_latipes_hni
ENSAMXG00000016364	NCBP1	100	91.000	ENSORLG00015012127	NCBP1	100	91.000	Oryzias_latipes_hsok
ENSAMXG00000016364	NCBP1	100	90.875	ENSOMEG00000020698	NCBP1	100	90.875	Oryzias_melastigma
ENSAMXG00000016364	NCBP1	99	81.203	ENSOGAG00000013888	NCBP1	99	81.704	Otolemur_garnettii
ENSAMXG00000016364	NCBP1	99	81.407	ENSOARG00000011233	NCBP1	99	81.910	Ovis_aries
ENSAMXG00000016364	NCBP1	99	81.281	ENSPPAG00000026462	NCBP1	99	81.784	Pan_paniscus
ENSAMXG00000016364	NCBP1	99	81.533	ENSPPRG00000022574	NCBP1	99	82.035	Panthera_pardus
ENSAMXG00000016364	NCBP1	99	81.533	ENSPTIG00000018507	NCBP1	99	82.035	Panthera_tigris_altaica
ENSAMXG00000016364	NCBP1	99	81.281	ENSPTRG00000021167	NCBP1	99	81.784	Pan_troglodytes
ENSAMXG00000016364	NCBP1	99	81.281	ENSPANG00000025591	NCBP1	99	81.784	Papio_anubis
ENSAMXG00000016364	NCBP1	99	89.447	ENSPKIG00000015861	NCBP1	99	89.447	Paramormyrops_kingsleyae
ENSAMXG00000016364	NCBP1	64	81.676	ENSPSIG00000009558	NCBP1	99	81.676	Pelodiscus_sinensis
ENSAMXG00000016364	NCBP1	100	85.625	ENSPMGG00000020476	NCBP1	100	85.625	Periophthalmus_magnuspinnatus
ENSAMXG00000016364	NCBP1	99	80.528	ENSPEMG00000020105	Ncbp1	99	81.030	Peromyscus_maniculatus_bairdii
ENSAMXG00000016364	NCBP1	99	68.493	ENSPMAG00000005533	NCBP1	99	68.244	Petromyzon_marinus
ENSAMXG00000016364	NCBP1	99	81.281	ENSPCIG00000015800	NCBP1	99	85.022	Phascolarctos_cinereus
ENSAMXG00000016364	NCBP1	100	90.989	ENSPFOG00000004158	NCBP1	100	90.989	Poecilia_formosa
ENSAMXG00000016364	NCBP1	100	91.217	ENSPLAG00000020002	NCBP1	100	91.217	Poecilia_latipinna
ENSAMXG00000016364	NCBP1	100	91.217	ENSPMEG00000019821	NCBP1	100	91.217	Poecilia_mexicana
ENSAMXG00000016364	NCBP1	100	90.966	ENSPREG00000006035	NCBP1	100	90.966	Poecilia_reticulata
ENSAMXG00000016364	NCBP1	99	81.281	ENSPPYG00000019426	NCBP1	99	81.784	Pongo_abelii
ENSAMXG00000016364	NCBP1	90	80.363	ENSPCAG00000009943	NCBP1	90	80.363	Procavia_capensis
ENSAMXG00000016364	NCBP1	82	87.500	ENSPCOG00000020024	NCBP1	98	87.500	Propithecus_coquereli
ENSAMXG00000016364	NCBP1	99	81.281	ENSPVAG00000005924	NCBP1	99	81.658	Pteropus_vampyrus
ENSAMXG00000016364	NCBP1	91	89.335	ENSPNYG00000002140	NCBP1	99	89.335	Pundamilia_nyererei
ENSAMXG00000016364	NCBP1	100	94.236	ENSPNAG00000027753	NCBP1	100	94.236	Pygocentrus_nattereri
ENSAMXG00000016364	NCBP1	99	81.156	ENSRNOG00000023605	Ncbp1	99	81.658	Rattus_norvegicus
ENSAMXG00000016364	NCBP1	99	81.281	ENSRBIG00000043175	NCBP1	99	81.784	Rhinopithecus_bieti
ENSAMXG00000016364	NCBP1	99	81.281	ENSRROG00000029767	NCBP1	99	81.784	Rhinopithecus_roxellana
ENSAMXG00000016364	NCBP1	99	81.281	ENSSBOG00000019378	NCBP1	98	87.073	Saimiri_boliviensis_boliviensis
ENSAMXG00000016364	NCBP1	70	76.515	ENSSHAG00000015882	NCBP1	72	77.519	Sarcophilus_harrisii
ENSAMXG00000016364	NCBP1	98	86.752	ENSSFOG00015001872	NCBP1	99	85.930	Scleropages_formosus
ENSAMXG00000016364	NCBP1	100	90.464	ENSSMAG00000007463	NCBP1	100	90.464	Scophthalmus_maximus
ENSAMXG00000016364	NCBP1	100	90.464	ENSSDUG00000007019	NCBP1	100	90.971	Seriola_dumerili
ENSAMXG00000016364	NCBP1	100	91.217	ENSSLDG00000021924	NCBP1	100	91.217	Seriola_lalandi_dorsalis
ENSAMXG00000016364	NCBP1	85	69.181	ENSSARG00000007274	NCBP1	86	70.043	Sorex_araneus
ENSAMXG00000016364	NCBP1	99	76.759	ENSSPUG00000008609	NCBP1	99	76.884	Sphenodon_punctatus
ENSAMXG00000016364	NCBP1	100	91.970	ENSSPAG00000012550	NCBP1	100	91.970	Stegastes_partitus
ENSAMXG00000016364	NCBP1	99	81.281	ENSSSCG00000005366	NCBP1	99	81.784	Sus_scrofa
ENSAMXG00000016364	NCBP1	99	78.894	ENSTGUG00000001472	NCBP1	99	78.894	Taeniopygia_guttata
ENSAMXG00000016364	NCBP1	100	89.084	ENSTRUG00000005287	NCBP1	100	89.084	Takifugu_rubripes
ENSAMXG00000016364	NCBP1	99	78.894	ENSTBEG00000004035	NCBP1	99	79.397	Tupaia_belangeri
ENSAMXG00000016364	NCBP1	88	84.236	ENSTTRG00000000507	NCBP1	88	84.236	Tursiops_truncatus
ENSAMXG00000016364	NCBP1	99	81.407	ENSUAMG00000005471	NCBP1	99	81.910	Ursus_americanus
ENSAMXG00000016364	NCBP1	97	78.968	ENSUMAG00000011865	NCBP1	99	81.277	Ursus_maritimus
ENSAMXG00000016364	NCBP1	99	77.889	ENSVPAG00000010537	NCBP1	99	78.392	Vicugna_pacos
ENSAMXG00000016364	NCBP1	99	81.533	ENSVVUG00000019725	NCBP1	99	82.035	Vulpes_vulpes
ENSAMXG00000016364	NCBP1	99	79.020	ENSXETG00000010179	ncbp1	99	79.020	Xenopus_tropicalis
ENSAMXG00000016364	NCBP1	100	91.092	ENSXMAG00000018253	NCBP1	100	91.092	Xiphophorus_maculatus