EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000016545 (Gene tree)
Gene ID: 103034983
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 19964 bases
Position: chrAPWO02000037.1:2142629-2162592
Accession: 103034983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000036993	RRM_1	PF00076.22	8.7e-18	1	1
ENSAMXP00000017037	RRM_1	PF00076.22	1e-17	1	1
ENSAMXP00000036260	RRM_1	PF00076.22	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052190	-	2151	-	ENSAMXP00000036260	453 (aa)	-	-
ENSAMXT00000043109	-	1152	-	ENSAMXP00000036993	383 (aa)	-	-
ENSAMXT00000017037	-	2207	XM_007242145	ENSAMXP00000017037	410 (aa)	XP_007242207	W5LB25

Gene Model

Click here to download ENSAMXG00000016545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016545's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016545	rbm42	100	74.038	ENSAPOG00000015109	rbm42	100	74.279	Acanthochromis_polyacanthus
ENSAMXG00000016545	rbm42	100	72.304	ENSACIG00000010771	rbm42	100	70.433	Amphilophus_citrinellus
ENSAMXG00000016545	rbm42	100	74.279	ENSAOCG00000008873	rbm42	100	75.721	Amphiprion_ocellaris
ENSAMXG00000016545	rbm42	100	74.279	ENSAPEG00000012051	rbm42	99	75.721	Amphiprion_percula
ENSAMXG00000016545	rbm42	100	72.422	ENSATEG00000000536	rbm42	100	72.902	Anabas_testudineus
ENSAMXG00000016545	rbm42	100	74.940	ENSACLG00000004988	rbm42	100	74.458	Astatotilapia_calliptera
ENSAMXG00000016545	rbm42	97	69.343	ENSCSEG00000010248	rbm42	100	70.803	Cynoglossus_semilaevis
ENSAMXG00000016545	rbm42	100	70.504	ENSCVAG00000015589	rbm42	100	69.535	Cyprinodon_variegatus
ENSAMXG00000016545	rbm42	100	81.022	ENSDARG00000039910	rbm42	100	82.238	Danio_rerio
ENSAMXG00000016545	rbm42	100	83.135	ENSELUG00000022403	rbm42	100	80.760	Esox_lucius
ENSAMXG00000016545	rbm42	57	82.667	ENSFHEG00000006764	rbm42	75	82.667	Fundulus_heteroclitus
ENSAMXG00000016545	rbm42	100	70.192	ENSGMOG00000012660	rbm42	100	70.023	Gadus_morhua
ENSAMXG00000016545	rbm42	79	70.513	ENSGAFG00000009059	rbm42	100	70.938	Gambusia_affinis
ENSAMXG00000016545	rbm42	100	70.546	ENSGACG00000004170	rbm42	100	70.361	Gasterosteus_aculeatus
ENSAMXG00000016545	rbm42	100	74.940	ENSHBUG00000011141	rbm42	100	74.458	Haplochromis_burtoni
ENSAMXG00000016545	rbm42	100	70.983	ENSHCOG00000021214	rbm42	100	70.913	Hippocampus_comes
ENSAMXG00000016545	rbm42	100	89.855	ENSIPUG00000022365	rbm42	100	89.639	Ictalurus_punctatus
ENSAMXG00000016545	rbm42	91	68.063	ENSKMAG00000015287	rbm42	100	63.636	Kryptolebias_marmoratus
ENSAMXG00000016545	rbm42	100	73.671	ENSLBEG00000017547	rbm42	100	73.861	Labrus_bergylta
ENSAMXG00000016545	rbm42	85	71.388	ENSLBEG00000004578	-	96	71.629	Labrus_bergylta
ENSAMXG00000016545	rbm42	100	76.485	ENSLOCG00000003368	rbm42	100	76.485	Lepisosteus_oculatus
ENSAMXG00000016545	rbm42	100	72.902	ENSMAMG00000006708	rbm42	100	74.580	Mastacembelus_armatus
ENSAMXG00000016545	rbm42	100	74.940	ENSMZEG00005025234	rbm42	100	74.458	Maylandia_zebra
ENSAMXG00000016545	rbm42	100	64.128	ENSMALG00000015720	rbm42	100	73.280	Monopterus_albus
ENSAMXG00000016545	rbm42	100	75.598	ENSONIG00000008029	rbm42	100	74.524	Oreochromis_niloticus
ENSAMXG00000016545	rbm42	100	58.933	ENSORLG00020022507	rbm42	51	73.636	Oryzias_latipes_hni
ENSAMXG00000016545	rbm42	100	69.952	ENSORLG00015000659	rbm42	100	68.129	Oryzias_latipes_hsok
ENSAMXG00000016545	rbm42	60	81.974	ENSOMEG00000014332	rbm42	84	83.929	Oryzias_melastigma
ENSAMXG00000016545	rbm42	100	85.230	ENSPKIG00000015165	rbm42	100	85.230	Paramormyrops_kingsleyae
ENSAMXG00000016545	rbm42	95	44.681	ENSPSIG00000013935	-	71	77.778	Pelodiscus_sinensis
ENSAMXG00000016545	rbm42	73	81.818	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSAMXG00000016545	rbm42	56	55.856	ENSPMAG00000008633	rbm42	100	49.490	Petromyzon_marinus
ENSAMXG00000016545	rbm42	100	71.154	ENSPFOG00000007701	rbm42	100	71.053	Poecilia_formosa
ENSAMXG00000016545	rbm42	100	71.154	ENSPLAG00000009405	rbm42	100	71.053	Poecilia_latipinna
ENSAMXG00000016545	rbm42	100	70.913	ENSPMEG00000010375	rbm42	100	71.053	Poecilia_mexicana
ENSAMXG00000016545	rbm42	100	72.680	ENSPREG00000018102	rbm42	100	71.053	Poecilia_reticulata
ENSAMXG00000016545	rbm42	100	74.699	ENSPNYG00000014460	rbm42	100	74.217	Pundamilia_nyererei
ENSAMXG00000016545	rbm42	100	90.097	ENSPNAG00000009961	rbm42	100	90.097	Pygocentrus_nattereri
ENSAMXG00000016545	rbm42	100	80.569	ENSSFOG00015019227	rbm42	100	81.280	Scleropages_formosus
ENSAMXG00000016545	rbm42	100	73.558	ENSSMAG00000011935	rbm42	100	72.356	Scophthalmus_maximus
ENSAMXG00000016545	rbm42	100	74.519	ENSSDUG00000004033	rbm42	100	75.721	Seriola_dumerili
ENSAMXG00000016545	rbm42	100	71.835	ENSSLDG00000009918	rbm42	100	83.721	Seriola_lalandi_dorsalis
ENSAMXG00000016545	rbm42	100	74.279	ENSSPAG00000019871	rbm42	100	73.798	Stegastes_partitus
ENSAMXG00000016545	rbm42	100	67.612	ENSTRUG00000024586	-	78	62.980	Takifugu_rubripes
ENSAMXG00000016545	rbm42	99	58.057	ENSTNIG00000011669	rbm42	100	60.088	Tetraodon_nigroviridis
ENSAMXG00000016545	rbm42	100	56.635	ENSXETG00000017599	rbm42	100	56.109	Xenopus_tropicalis
ENSAMXG00000016545	rbm42	100	71.247	ENSXMAG00000012827	rbm42	100	70.813	Xiphophorus_maculatus