EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000016745 (Gene tree)
Gene ID: 103041605
Gene Symbol: CPSF6
Alias: wu:fa22f12|zgc:85819
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8436 bases
Position: chr11:9179833-9188268
Accession: 103041605
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000017248	RRM_1	PF00076.22	3.7e-07	1	1
ENSAMXP00000017247	RRM_1	PF00076.22	4.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000017248	CPSF6-203	1362	-	ENSAMXP00000017248	453 (aa)	-	W5LBN6
ENSAMXT00000017247	CPSF6-201	1614	XM_022674292	ENSAMXP00000017247	537 (aa)	XP_022530013	W5LBN5
ENSAMXT00000053816	CPSF6-202	1551	-	ENSAMXP00000040159	516 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000016745's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016745's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016745	CPSF6	75	89.091	ENSG00000111605	CPSF6	88	75.532	Homo_sapiens
ENSAMXG00000016745	CPSF6	94	43.319	ENSG00000149532	CPSF7	91	60.131	Homo_sapiens
ENSAMXG00000016745	CPSF6	78	51.323	ENSAMEG00000016595	CPSF7	64	59.064	Ailuropoda_melanoleuca
ENSAMXG00000016745	CPSF6	92	83.636	ENSAMEG00000011781	CPSF6	75	83.832	Ailuropoda_melanoleuca
ENSAMXG00000016745	CPSF6	75	92.121	ENSACIG00000018413	cpsf6	95	49.265	Amphilophus_citrinellus
ENSAMXG00000016745	CPSF6	75	92.727	ENSAOCG00000017865	cpsf6	95	81.154	Amphiprion_ocellaris
ENSAMXG00000016745	CPSF6	75	87.273	ENSACAG00000004381	CPSF6	64	87.425	Anolis_carolinensis
ENSAMXG00000016745	CPSF6	67	45.894	ENSANAG00000024635	CPSF7	72	53.968	Aotus_nancymaae
ENSAMXG00000016745	CPSF6	70	89.091	ENSANAG00000019240	CPSF6	60	90.419	Aotus_nancymaae
ENSAMXG00000016745	CPSF6	75	91.566	ENSACLG00000026325	cpsf6	59	92.262	Astatotilapia_calliptera
ENSAMXG00000016745	CPSF6	75	89.091	ENSBTAG00000007323	CPSF6	62	90.419	Bos_taurus
ENSAMXG00000016745	CPSF6	94	43.319	ENSCJAG00000019282	CPSF7	82	60.265	Callithrix_jacchus
ENSAMXG00000016745	CPSF6	75	90.303	ENSCJAG00000001798	CPSF6	62	90.419	Callithrix_jacchus
ENSAMXG00000016745	CPSF6	70	89.091	ENSCAFG00000000424	CPSF6	71	78.443	Canis_familiaris
ENSAMXG00000016745	CPSF6	75	89.091	ENSCAFG00020016950	CPSF6	62	90.419	Canis_lupus_dingo
ENSAMXG00000016745	CPSF6	75	89.091	ENSCHIG00000010792	CPSF6	62	90.419	Capra_hircus
ENSAMXG00000016745	CPSF6	71	90.303	ENSTSYG00000008591	CPSF6	62	90.419	Carlito_syrichta
ENSAMXG00000016745	CPSF6	75	88.485	ENSCPOG00000015201	CPSF6	62	89.820	Cavia_porcellus
ENSAMXG00000016745	CPSF6	75	90.303	ENSCCAG00000028149	CPSF6	62	90.419	Cebus_capucinus
ENSAMXG00000016745	CPSF6	75	89.091	ENSCATG00000039288	CPSF6	62	90.419	Cercocebus_atys
ENSAMXG00000016745	CPSF6	70	89.697	ENSCLAG00000010149	CPSF6	61	89.820	Chinchilla_lanigera
ENSAMXG00000016745	CPSF6	75	89.091	ENSCSAG00000004232	CPSF6	58	90.419	Chlorocebus_sabaeus
ENSAMXG00000016745	CPSF6	75	89.091	ENSCPBG00000013322	CPSF6	62	90.419	Chrysemys_picta_bellii
ENSAMXG00000016745	CPSF6	70	89.091	ENSCANG00000037294	CPSF6	61	90.419	Colobus_angolensis_palliatus
ENSAMXG00000016745	CPSF6	75	90.303	ENSCGRG00001018082	Cpsf6	62	90.419	Cricetulus_griseus_chok1gshd
ENSAMXG00000016745	CPSF6	73	90.303	ENSCGRG00000016909	Cpsf6	62	90.419	Cricetulus_griseus_crigri
ENSAMXG00000016745	CPSF6	75	92.771	ENSCSEG00000008967	cpsf6	65	90.805	Cynoglossus_semilaevis
ENSAMXG00000016745	CPSF6	80	32.353	ENSCSEG00000001956	CPSF7	75	37.696	Cynoglossus_semilaevis
ENSAMXG00000016745	CPSF6	75	89.759	ENSCVAG00000014857	cpsf6	77	90.476	Cyprinodon_variegatus
ENSAMXG00000016745	CPSF6	87	31.068	ENSCVAG00000007392	CPSF7	66	44.828	Cyprinodon_variegatus
ENSAMXG00000016745	CPSF6	86	93.452	ENSDARG00000018618	cpsf6	94	80.658	Danio_rerio
ENSAMXG00000016745	CPSF6	75	90.303	ENSDNOG00000015292	CPSF6	62	90.419	Dasypus_novemcinctus
ENSAMXG00000016745	CPSF6	94	41.501	ENSDNOG00000018517	CPSF7	82	60.927	Dasypus_novemcinctus
ENSAMXG00000016745	CPSF6	70	90.303	ENSDORG00000002950	Cpsf6	59	90.419	Dipodomys_ordii
ENSAMXG00000016745	CPSF6	54	77.922	FBgn0035872	CG7185	60	48.980	Drosophila_melanogaster
ENSAMXG00000016745	CPSF6	70	48.045	ENSETEG00000003765	CPSF7	69	48.045	Echinops_telfairi
ENSAMXG00000016745	CPSF6	86	67.879	ENSETEG00000002097	CPSF6	68	79.149	Echinops_telfairi
ENSAMXG00000016745	CPSF6	93	53.922	ENSEBUG00000003540	cpsf6	68	80.723	Eptatretus_burgeri
ENSAMXG00000016745	CPSF6	75	89.091	ENSEASG00005008066	CPSF6	62	90.419	Equus_asinus_asinus
ENSAMXG00000016745	CPSF6	75	89.091	ENSECAG00000015988	CPSF6	62	90.419	Equus_caballus
ENSAMXG00000016745	CPSF6	94	39.910	ENSECAG00000018521	CPSF7	87	60.927	Equus_caballus
ENSAMXG00000016745	CPSF6	70	89.091	ENSEEUG00000015039	CPSF6	57	90.419	Erinaceus_europaeus
ENSAMXG00000016745	CPSF6	60	60.331	ENSEEUG00000005966	-	67	62.069	Erinaceus_europaeus
ENSAMXG00000016745	CPSF6	75	89.091	ENSFCAG00000002855	CPSF6	62	90.419	Felis_catus
ENSAMXG00000016745	CPSF6	94	40.807	ENSFCAG00000013677	CPSF7	87	60.927	Felis_catus
ENSAMXG00000016745	CPSF6	70	90.303	ENSFALG00000010157	CPSF6	61	90.419	Ficedula_albicollis
ENSAMXG00000016745	CPSF6	94	44.206	ENSFALG00000011927	CPSF7	76	59.064	Ficedula_albicollis
ENSAMXG00000016745	CPSF6	71	88.485	ENSFDAG00000002281	CPSF6	59	89.820	Fukomys_damarensis
ENSAMXG00000016745	CPSF6	75	90.964	ENSFHEG00000019693	cpsf6	95	67.617	Fundulus_heteroclitus
ENSAMXG00000016745	CPSF6	65	92.562	ENSGMOG00000012951	cpsf6	54	94.262	Gadus_morhua
ENSAMXG00000016745	CPSF6	82	86.932	ENSGACG00000019685	cpsf6	62	90.419	Gasterosteus_aculeatus
ENSAMXG00000016745	CPSF6	75	89.091	ENSGAGG00000010228	CPSF6	62	90.419	Gopherus_agassizii
ENSAMXG00000016745	CPSF6	75	90.303	ENSGGOG00000008211	CPSF6	62	90.419	Gorilla_gorilla
ENSAMXG00000016745	CPSF6	75	91.566	ENSHBUG00000005998	cpsf6	95	80.422	Haplochromis_burtoni
ENSAMXG00000016745	CPSF6	75	88.485	ENSHGLG00000000792	CPSF6	62	89.820	Heterocephalus_glaber_female
ENSAMXG00000016745	CPSF6	74	88.485	ENSHGLG00100013861	CPSF6	62	89.820	Heterocephalus_glaber_male
ENSAMXG00000016745	CPSF6	76	88.554	ENSHCOG00000014555	cpsf6	63	88.757	Hippocampus_comes
ENSAMXG00000016745	CPSF6	70	90.303	ENSSTOG00000014133	CPSF6	61	90.419	Ictidomys_tridecemlineatus
ENSAMXG00000016745	CPSF6	70	90.303	ENSJJAG00000014647	Cpsf6	60	90.419	Jaculus_jaculus
ENSAMXG00000016745	CPSF6	87	90.303	ENSKMAG00000014794	cpsf6	95	79.961	Kryptolebias_marmoratus
ENSAMXG00000016745	CPSF6	75	91.011	ENSLBEG00000015762	cpsf6	58	91.667	Labrus_bergylta
ENSAMXG00000016745	CPSF6	84	33.582	ENSLBEG00000000947	CPSF7	60	48.673	Labrus_bergylta
ENSAMXG00000016745	CPSF6	75	88.485	ENSLACG00000008625	CPSF6	62	88.623	Latimeria_chalumnae
ENSAMXG00000016745	CPSF6	75	92.169	ENSLOCG00000016190	cpsf6	66	92.216	Lepisosteus_oculatus
ENSAMXG00000016745	CPSF6	75	89.091	ENSLAFG00000030413	CPSF6	76	79.121	Loxodonta_africana
ENSAMXG00000016745	CPSF6	75	90.303	ENSMFAG00000045318	CPSF6	62	90.419	Macaca_fascicularis
ENSAMXG00000016745	CPSF6	75	90.303	ENSMMUG00000002921	CPSF6	62	90.419	Macaca_mulatta
ENSAMXG00000016745	CPSF6	75	90.303	ENSMNEG00000036311	CPSF6	62	90.419	Macaca_nemestrina
ENSAMXG00000016745	CPSF6	70	89.091	ENSMLEG00000003957	CPSF6	61	90.419	Mandrillus_leucophaeus
ENSAMXG00000016745	CPSF6	75	91.566	ENSMAMG00000010385	cpsf6	95	81.154	Mastacembelus_armatus
ENSAMXG00000016745	CPSF6	75	91.566	ENSMZEG00005007975	cpsf6	95	80.422	Maylandia_zebra
ENSAMXG00000016745	CPSF6	73	90.303	ENSMGAG00000010552	CPSF6	63	90.419	Meleagris_gallopavo
ENSAMXG00000016745	CPSF6	95	40.747	ENSMGAG00000004876	CPSF7	63	61.677	Meleagris_gallopavo
ENSAMXG00000016745	CPSF6	75	89.091	ENSMAUG00000013240	Cpsf6	62	90.419	Mesocricetus_auratus
ENSAMXG00000016745	CPSF6	75	90.303	ENSMICG00000007385	-	62	90.419	Microcebus_murinus
ENSAMXG00000016745	CPSF6	75	90.303	ENSMOCG00000013982	Cpsf6	62	90.419	Microtus_ochrogaster
ENSAMXG00000016745	CPSF6	75	89.697	ENSMODG00000007123	CPSF6	62	91.018	Monodelphis_domestica
ENSAMXG00000016745	CPSF6	81	89.773	ENSMALG00000014908	cpsf6	76	92.814	Monopterus_albus
ENSAMXG00000016745	CPSF6	75	90.303	MGP_CAROLIEiJ_G0015834	Cpsf6	62	90.419	Mus_caroli
ENSAMXG00000016745	CPSF6	75	90.303	ENSMUSG00000055531	Cpsf6	62	90.419	Mus_musculus
ENSAMXG00000016745	CPSF6	75	79.545	MGP_PahariEiJ_G0031253	Cpsf6	60	79.545	Mus_pahari
ENSAMXG00000016745	CPSF6	75	90.303	MGP_SPRETEiJ_G0016657	Cpsf6	62	90.419	Mus_spretus
ENSAMXG00000016745	CPSF6	70	83.636	ENSMPUG00000017502	CPSF6	60	83.832	Mustela_putorius_furo
ENSAMXG00000016745	CPSF6	78	76.879	ENSMLUG00000023960	-	73	76.879	Myotis_lucifugus
ENSAMXG00000016745	CPSF6	74	83.636	ENSMLUG00000004172	-	61	83.832	Myotis_lucifugus
ENSAMXG00000016745	CPSF6	94	61.644	ENSMLUG00000028728	-	88	83.562	Myotis_lucifugus
ENSAMXG00000016745	CPSF6	75	90.303	ENSNGAG00000015901	Cpsf6	62	90.419	Nannospalax_galili
ENSAMXG00000016745	CPSF6	75	91.566	ENSNBRG00000004089	cpsf6	95	80.614	Neolamprologus_brichardi
ENSAMXG00000016745	CPSF6	75	90.303	ENSNLEG00000003798	CPSF6	62	90.419	Nomascus_leucogenys
ENSAMXG00000016745	CPSF6	75	81.212	ENSMEUG00000015041	CPSF6	58	82.635	Notamacropus_eugenii
ENSAMXG00000016745	CPSF6	70	89.091	ENSOPRG00000005199	CPSF6	57	90.419	Ochotona_princeps
ENSAMXG00000016745	CPSF6	68	49.500	ENSODEG00000002610	CPSF7	74	58.602	Octodon_degus
ENSAMXG00000016745	CPSF6	75	89.157	ENSODEG00000018399	-	63	89.222	Octodon_degus
ENSAMXG00000016745	CPSF6	70	89.697	ENSODEG00000004418	-	87	89.820	Octodon_degus
ENSAMXG00000016745	CPSF6	81	62.252	ENSODEG00000007109	-	74	61.635	Octodon_degus
ENSAMXG00000016745	CPSF6	75	91.566	ENSONIG00000011702	cpsf6	76	91.667	Oreochromis_niloticus
ENSAMXG00000016745	CPSF6	77	79.355	ENSOANG00000005944	CPSF6	52	94.309	Ornithorhynchus_anatinus
ENSAMXG00000016745	CPSF6	89	47.872	ENSOCUG00000024726	CPSF7	65	59.064	Oryctolagus_cuniculus
ENSAMXG00000016745	CPSF6	75	89.091	ENSOCUG00000013505	CPSF6	58	90.419	Oryctolagus_cuniculus
ENSAMXG00000016745	CPSF6	75	92.121	ENSORLG00000013893	cpsf6	62	92.814	Oryzias_latipes
ENSAMXG00000016745	CPSF6	69	35.417	ENSORLG00000006495	CPSF7	62	39.645	Oryzias_latipes
ENSAMXG00000016745	CPSF6	69	35.417	ENSORLG00020012657	CPSF7	62	39.645	Oryzias_latipes_hni
ENSAMXG00000016745	CPSF6	75	92.121	ENSORLG00020016593	cpsf6	62	92.814	Oryzias_latipes_hni
ENSAMXG00000016745	CPSF6	69	35.417	ENSORLG00015011091	CPSF7	62	39.645	Oryzias_latipes_hsok
ENSAMXG00000016745	CPSF6	75	92.121	ENSORLG00015015558	cpsf6	62	92.814	Oryzias_latipes_hsok
ENSAMXG00000016745	CPSF6	75	91.515	ENSOMEG00000009425	cpsf6	62	92.216	Oryzias_melastigma
ENSAMXG00000016745	CPSF6	61	39.881	ENSOMEG00000000539	CPSF7	67	41.584	Oryzias_melastigma
ENSAMXG00000016745	CPSF6	70	83.636	ENSOGAG00000031988	CPSF6	60	83.832	Otolemur_garnettii
ENSAMXG00000016745	CPSF6	94	39.499	ENSOARG00000012937	CPSF7	65	59.064	Ovis_aries
ENSAMXG00000016745	CPSF6	71	90.303	ENSOARG00000020532	CPSF6	57	90.419	Ovis_aries
ENSAMXG00000016745	CPSF6	71	90.303	ENSPPAG00000005301	CPSF6	57	90.419	Pan_paniscus
ENSAMXG00000016745	CPSF6	80	51.323	ENSPPRG00000008538	CPSF7	73	59.649	Panthera_pardus
ENSAMXG00000016745	CPSF6	75	89.091	ENSPPRG00000021620	CPSF6	62	90.419	Panthera_pardus
ENSAMXG00000016745	CPSF6	63	89.091	ENSPTIG00000004079	CPSF6	58	90.419	Panthera_tigris_altaica
ENSAMXG00000016745	CPSF6	75	90.303	ENSPTRG00000005205	CPSF6	62	90.419	Pan_troglodytes
ENSAMXG00000016745	CPSF6	75	89.091	ENSPANG00000011641	CPSF6	62	90.419	Papio_anubis
ENSAMXG00000016745	CPSF6	87	93.976	ENSPKIG00000022613	CPSF6	95	61.877	Paramormyrops_kingsleyae
ENSAMXG00000016745	CPSF6	75	91.566	ENSPKIG00000003081	-	95	56.298	Paramormyrops_kingsleyae
ENSAMXG00000016745	CPSF6	70	90.303	ENSPEMG00000007973	Cpsf6	61	90.419	Peromyscus_maniculatus_bairdii
ENSAMXG00000016745	CPSF6	82	70.833	ENSPMAG00000000657	cpsf6	60	83.465	Petromyzon_marinus
ENSAMXG00000016745	CPSF6	75	89.697	ENSPCIG00000019063	CPSF6	62	91.018	Phascolarctos_cinereus
ENSAMXG00000016745	CPSF6	71	49.162	ENSPCIG00000002551	CPSF7	73	66.154	Phascolarctos_cinereus
ENSAMXG00000016745	CPSF6	51	73.077	ENSPFOG00000006990	cpsf6	50	89.316	Poecilia_formosa
ENSAMXG00000016745	CPSF6	87	90.361	ENSPLAG00000005715	cpsf6	95	79.846	Poecilia_latipinna
ENSAMXG00000016745	CPSF6	87	90.361	ENSPMEG00000001353	cpsf6	95	79.846	Poecilia_mexicana
ENSAMXG00000016745	CPSF6	87	90.361	ENSPREG00000004417	cpsf6	94	77.351	Poecilia_reticulata
ENSAMXG00000016745	CPSF6	75	89.091	ENSPPYG00000004756	CPSF6	62	90.419	Pongo_abelii
ENSAMXG00000016745	CPSF6	75	89.091	ENSPCAG00000011574	CPSF6	58	90.419	Procavia_capensis
ENSAMXG00000016745	CPSF6	75	90.303	ENSPCOG00000024384	CPSF6	62	90.419	Propithecus_coquereli
ENSAMXG00000016745	CPSF6	75	88.415	ENSPVAG00000015753	CPSF6	58	89.759	Pteropus_vampyrus
ENSAMXG00000016745	CPSF6	75	91.566	ENSPNYG00000020315	cpsf6	59	92.262	Pundamilia_nyererei
ENSAMXG00000016745	CPSF6	100	74.818	ENSPNAG00000024098	CPSF6	100	72.628	Pygocentrus_nattereri
ENSAMXG00000016745	CPSF6	75	89.091	ENSRNOG00000005927	Cpsf6	62	90.419	Rattus_norvegicus
ENSAMXG00000016745	CPSF6	75	90.303	ENSRBIG00000042827	CPSF6	62	90.419	Rhinopithecus_bieti
ENSAMXG00000016745	CPSF6	94	43.319	ENSRBIG00000031429	CPSF7	87	60.265	Rhinopithecus_bieti
ENSAMXG00000016745	CPSF6	75	89.091	ENSRROG00000042758	CPSF6	62	90.419	Rhinopithecus_roxellana
ENSAMXG00000016745	CPSF6	71	90.303	ENSSBOG00000010652	CPSF6	58	90.419	Saimiri_boliviensis_boliviensis
ENSAMXG00000016745	CPSF6	70	81.065	ENSSHAG00000006635	CPSF6	61	80.702	Sarcophilus_harrisii
ENSAMXG00000016745	CPSF6	75	93.373	ENSSFOG00015015803	CPSF6	63	93.413	Scleropages_formosus
ENSAMXG00000016745	CPSF6	75	92.308	ENSSFOG00015001688	CPSF6	54	93.413	Scleropages_formosus
ENSAMXG00000016745	CPSF6	95	36.111	ENSSFOG00015010288	cpsf7	78	40.000	Scleropages_formosus
ENSAMXG00000016745	CPSF6	75	90.361	ENSSMAG00000000471	cpsf6	59	91.667	Scophthalmus_maximus
ENSAMXG00000016745	CPSF6	75	91.566	ENSSDUG00000005024	cpsf6	95	81.154	Seriola_dumerili
ENSAMXG00000016745	CPSF6	75	91.566	ENSSLDG00000009042	cpsf6	95	81.154	Seriola_lalandi_dorsalis
ENSAMXG00000016745	CPSF6	75	89.091	ENSSARG00000006743	CPSF6	68	90.419	Sorex_araneus
ENSAMXG00000016745	CPSF6	75	79.545	ENSSPUG00000001238	CPSF6	64	79.545	Sphenodon_punctatus
ENSAMXG00000016745	CPSF6	75	93.333	ENSSPAG00000013906	cpsf6	95	81.538	Stegastes_partitus
ENSAMXG00000016745	CPSF6	94	41.501	ENSSSCG00000013083	CPSF7	82	60.927	Sus_scrofa
ENSAMXG00000016745	CPSF6	75	89.091	ENSSSCG00000038031	CPSF6	62	90.419	Sus_scrofa
ENSAMXG00000016745	CPSF6	75	92.121	ENSTRUG00000016461	cpsf6	63	92.814	Takifugu_rubripes
ENSAMXG00000016745	CPSF6	75	91.515	ENSTNIG00000007576	cpsf6	95	56.647	Tetraodon_nigroviridis
ENSAMXG00000016745	CPSF6	63	89.091	ENSUAMG00000023492	CPSF6	58	90.419	Ursus_americanus
ENSAMXG00000016745	CPSF6	63	89.091	ENSUMAG00000020779	CPSF6	63	90.419	Ursus_maritimus
ENSAMXG00000016745	CPSF6	70	89.091	ENSVPAG00000008469	CPSF6	57	90.419	Vicugna_pacos
ENSAMXG00000016745	CPSF6	63	89.091	ENSVVUG00000010156	-	54	90.419	Vulpes_vulpes
ENSAMXG00000016745	CPSF6	94	41.501	ENSVVUG00000004939	CPSF7	82	60.927	Vulpes_vulpes
ENSAMXG00000016745	CPSF6	96	42.495	ENSXETG00000006715	cpsf7	67	51.445	Xenopus_tropicalis
ENSAMXG00000016745	CPSF6	87	90.361	ENSXMAG00000003459	cpsf6	65	91.071	Xiphophorus_maculatus