EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000016932 (Gene tree)
Gene ID: 103043545
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 2887 bases
Position: chr5:17306881-17309767
Accession: 103043545
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000047689	LSM	PF01423.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045373	-	1328	XM_007233141	ENSAMXP00000047689	142 (aa)	XP_007233203	UPI0003CD2262
ENSAMXT00000017430	-	375	-	ENSAMXP00000017430	124 (aa)	-	W5LC68

Gene Model

Click here to download ENSAMXG00000016932's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016932's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000016932	lsm4	68	33.000	ENSAMXG00000036868	si:ch73-14h10.2	100	33.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016932	lsm4	62	97.727	ENSG00000130520	LSM4	99	84.058	Homo_sapiens
ENSAMXG00000016932	lsm4	100	84.868	ENSAPOG00000005643	lsm4	100	85.526	Acanthochromis_polyacanthus
ENSAMXG00000016932	lsm4	61	97.701	ENSAMEG00000011162	LSM4	93	83.942	Ailuropoda_melanoleuca
ENSAMXG00000016932	lsm4	100	78.378	ENSAOCG00000006414	lsm4	100	87.248	Amphiprion_ocellaris
ENSAMXG00000016932	lsm4	100	86.000	ENSAPEG00000006238	lsm4	100	86.667	Amphiprion_percula
ENSAMXG00000016932	lsm4	100	84.314	ENSATEG00000016559	lsm4	100	85.621	Anabas_testudineus
ENSAMXG00000016932	lsm4	62	97.727	ENSANAG00000034659	LSM4	99	84.058	Aotus_nancymaae
ENSAMXG00000016932	lsm4	100	85.811	ENSACLG00000022738	lsm4	100	86.486	Astatotilapia_calliptera
ENSAMXG00000016932	lsm4	62	97.727	ENSBTAG00000008578	LSM4	99	84.058	Bos_taurus
ENSAMXG00000016932	lsm4	58	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSAMXG00000016932	lsm4	62	97.727	ENSCJAG00000014171	LSM4	99	84.058	Callithrix_jacchus
ENSAMXG00000016932	lsm4	62	97.727	ENSCAFG00000014900	LSM4	90	81.159	Canis_familiaris
ENSAMXG00000016932	lsm4	62	97.727	ENSCAFG00020012137	LSM4	99	84.058	Canis_lupus_dingo
ENSAMXG00000016932	lsm4	61	97.701	ENSCHIG00000010928	LSM4	90	81.022	Capra_hircus
ENSAMXG00000016932	lsm4	62	96.591	ENSTSYG00000030906	LSM4	99	83.333	Carlito_syrichta
ENSAMXG00000016932	lsm4	62	96.591	ENSCAPG00000014140	LSM4	99	80.714	Cavia_aperea
ENSAMXG00000016932	lsm4	62	96.591	ENSCPOG00000024117	LSM4	99	80.714	Cavia_porcellus
ENSAMXG00000016932	lsm4	62	97.727	ENSCCAG00000036308	LSM4	99	84.058	Cebus_capucinus
ENSAMXG00000016932	lsm4	62	97.727	ENSCATG00000029311	LSM4	99	84.058	Cercocebus_atys
ENSAMXG00000016932	lsm4	96	83.212	ENSCLAG00000010828	LSM4	99	78.986	Chinchilla_lanigera
ENSAMXG00000016932	lsm4	62	97.727	ENSCSAG00000005370	LSM4	99	84.058	Chlorocebus_sabaeus
ENSAMXG00000016932	lsm4	94	91.791	ENSCPBG00000012925	LSM4	96	91.791	Chrysemys_picta_bellii
ENSAMXG00000016932	lsm4	61	93.023	ENSCING00000007519	-	72	92.391	Ciona_intestinalis
ENSAMXG00000016932	lsm4	61	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSAMXG00000016932	lsm4	62	97.727	ENSCANG00000043686	LSM4	99	84.058	Colobus_angolensis_palliatus
ENSAMXG00000016932	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	81.884	Cricetulus_griseus_chok1gshd
ENSAMXG00000016932	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	96	81.159	Cricetulus_griseus_crigri
ENSAMXG00000016932	lsm4	100	85.211	ENSCSEG00000016127	lsm4	100	92.308	Cynoglossus_semilaevis
ENSAMXG00000016932	lsm4	100	90.278	ENSCVAG00000010601	lsm4	100	90.972	Cyprinodon_variegatus
ENSAMXG00000016932	lsm4	89	89.147	ENSCVAG00000021828	lsm4	98	89.922	Cyprinodon_variegatus
ENSAMXG00000016932	lsm4	96	90.845	ENSDARG00000023852	lsm4	99	90.141	Danio_rerio
ENSAMXG00000016932	lsm4	96	83.212	ENSDORG00000024225	Lsm4	99	79.710	Dipodomys_ordii
ENSAMXG00000016932	lsm4	68	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSAMXG00000016932	lsm4	86	81.967	ENSETEG00000007762	-	98	78.049	Echinops_telfairi
ENSAMXG00000016932	lsm4	53	93.333	ENSEBUG00000003639	-	63	80.000	Eptatretus_burgeri
ENSAMXG00000016932	lsm4	62	97.727	ENSECAG00000010141	LSM4	56	81.159	Equus_caballus
ENSAMXG00000016932	lsm4	93	96.241	ENSELUG00000012821	lsm4	100	96.241	Esox_lucius
ENSAMXG00000016932	lsm4	62	97.727	ENSFCAG00000040580	LSM4	99	84.058	Felis_catus
ENSAMXG00000016932	lsm4	94	90.977	ENSFALG00000009478	LSM4	96	90.977	Ficedula_albicollis
ENSAMXG00000016932	lsm4	61	97.701	ENSFDAG00000010124	LSM4	99	80.292	Fukomys_damarensis
ENSAMXG00000016932	lsm4	99	84.354	ENSGMOG00000007729	lsm4	99	85.034	Gadus_morhua
ENSAMXG00000016932	lsm4	94	91.045	ENSGALG00000003385	LSM4	96	91.045	Gallus_gallus
ENSAMXG00000016932	lsm4	100	91.667	ENSGAFG00000004903	lsm4	97	86.822	Gambusia_affinis
ENSAMXG00000016932	lsm4	100	74.667	ENSGACG00000008140	lsm4	100	85.333	Gasterosteus_aculeatus
ENSAMXG00000016932	lsm4	94	91.791	ENSGAGG00000017812	LSM4	96	91.791	Gopherus_agassizii
ENSAMXG00000016932	lsm4	62	97.727	ENSGGOG00000012914	-	99	84.058	Gorilla_gorilla
ENSAMXG00000016932	lsm4	100	86.395	ENSHBUG00000008858	lsm4	80	87.075	Haplochromis_burtoni
ENSAMXG00000016932	lsm4	96	78.986	ENSHGLG00000006568	LSM4	99	78.986	Heterocephalus_glaber_female
ENSAMXG00000016932	lsm4	65	96.774	ENSHGLG00100007894	LSM4	100	96.774	Heterocephalus_glaber_male
ENSAMXG00000016932	lsm4	100	90.210	ENSHCOG00000008819	lsm4	100	90.210	Hippocampus_comes
ENSAMXG00000016932	lsm4	100	97.183	ENSIPUG00000005368	Lsm4	100	97.183	Ictalurus_punctatus
ENSAMXG00000016932	lsm4	62	97.727	ENSSTOG00000016494	LSM4	99	84.058	Ictidomys_tridecemlineatus
ENSAMXG00000016932	lsm4	62	95.455	ENSJJAG00000017420	Lsm4	99	81.884	Jaculus_jaculus
ENSAMXG00000016932	lsm4	100	87.586	ENSKMAG00000005073	lsm4	100	88.966	Kryptolebias_marmoratus
ENSAMXG00000016932	lsm4	100	86.000	ENSLBEG00000027930	lsm4	100	86.667	Labrus_bergylta
ENSAMXG00000016932	lsm4	96	85.507	ENSLACG00000015861	LSM4	99	89.286	Latimeria_chalumnae
ENSAMXG00000016932	lsm4	90	96.094	ENSLOCG00000002025	lsm4	100	94.366	Lepisosteus_oculatus
ENSAMXG00000016932	lsm4	96	83.824	ENSLAFG00000017459	LSM4	98	83.942	Loxodonta_africana
ENSAMXG00000016932	lsm4	62	97.727	ENSMFAG00000031194	LSM4	99	84.058	Macaca_fascicularis
ENSAMXG00000016932	lsm4	62	97.727	ENSMMUG00000004405	LSM4	99	84.058	Macaca_mulatta
ENSAMXG00000016932	lsm4	62	97.727	ENSMNEG00000042899	LSM4	99	84.058	Macaca_nemestrina
ENSAMXG00000016932	lsm4	62	97.727	ENSMLEG00000027948	LSM4	99	84.058	Mandrillus_leucophaeus
ENSAMXG00000016932	lsm4	100	90.210	ENSMAMG00000006190	lsm4	100	90.210	Mastacembelus_armatus
ENSAMXG00000016932	lsm4	100	86.395	ENSMZEG00005016420	lsm4	100	87.075	Maylandia_zebra
ENSAMXG00000016932	lsm4	94	84.328	ENSMGAG00000004976	LSM4	96	88.060	Meleagris_gallopavo
ENSAMXG00000016932	lsm4	96	83.212	ENSMICG00000000222	LSM4	99	83.333	Microcebus_murinus
ENSAMXG00000016932	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	81.884	Microtus_ochrogaster
ENSAMXG00000016932	lsm4	86	83.607	ENSMODG00000015044	-	98	82.927	Monodelphis_domestica
ENSAMXG00000016932	lsm4	100	89.583	ENSMALG00000018159	lsm4	100	90.278	Monopterus_albus
ENSAMXG00000016932	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	81.884	Mus_caroli
ENSAMXG00000016932	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSAMXG00000016932	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	81.884	Mus_pahari
ENSAMXG00000016932	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	81.884	Mus_spretus
ENSAMXG00000016932	lsm4	62	97.727	ENSMPUG00000015589	LSM4	99	84.058	Mustela_putorius_furo
ENSAMXG00000016932	lsm4	61	97.701	ENSMLUG00000004010	LSM4	98	83.942	Myotis_lucifugus
ENSAMXG00000016932	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	81.884	Nannospalax_galili
ENSAMXG00000016932	lsm4	77	96.330	ENSNBRG00000022150	lsm4	67	96.330	Neolamprologus_brichardi
ENSAMXG00000016932	lsm4	86	80.328	ENSMEUG00000013229	LSM4	98	78.049	Notamacropus_eugenii
ENSAMXG00000016932	lsm4	86	78.689	ENSOPRG00000005575	LSM4	98	77.869	Ochotona_princeps
ENSAMXG00000016932	lsm4	96	83.212	ENSODEG00000020549	-	99	79.710	Octodon_degus
ENSAMXG00000016932	lsm4	62	87.500	ENSODEG00000004519	-	99	71.014	Octodon_degus
ENSAMXG00000016932	lsm4	96	64.748	ENSODEG00000011712	-	98	64.748	Octodon_degus
ENSAMXG00000016932	lsm4	100	85.811	ENSONIG00000012724	lsm4	100	86.486	Oreochromis_niloticus
ENSAMXG00000016932	lsm4	61	93.407	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSAMXG00000016932	lsm4	100	87.586	ENSORLG00000008391	lsm4	100	87.586	Oryzias_latipes
ENSAMXG00000016932	lsm4	100	88.276	ENSORLG00020014829	lsm4	100	88.276	Oryzias_latipes_hni
ENSAMXG00000016932	lsm4	100	87.586	ENSORLG00015010205	lsm4	100	87.586	Oryzias_latipes_hsok
ENSAMXG00000016932	lsm4	100	86.897	ENSOMEG00000003606	lsm4	100	86.897	Oryzias_melastigma
ENSAMXG00000016932	lsm4	69	94.898	ENSOGAG00000027992	LSM4	91	79.699	Otolemur_garnettii
ENSAMXG00000016932	lsm4	85	83.471	ENSOARG00000012553	LSM4	94	83.212	Ovis_aries
ENSAMXG00000016932	lsm4	62	97.727	ENSPPAG00000044045	-	99	84.058	Pan_paniscus
ENSAMXG00000016932	lsm4	62	97.727	ENSPPRG00000018264	LSM4	99	84.058	Panthera_pardus
ENSAMXG00000016932	lsm4	61	97.701	ENSPTIG00000006306	LSM4	99	83.942	Panthera_tigris_altaica
ENSAMXG00000016932	lsm4	62	97.727	ENSPTRG00000031470	LSM4	99	84.058	Pan_troglodytes
ENSAMXG00000016932	lsm4	62	97.727	ENSPANG00000014399	LSM4	99	84.058	Papio_anubis
ENSAMXG00000016932	lsm4	100	95.775	ENSPKIG00000006154	lsm4	100	95.775	Paramormyrops_kingsleyae
ENSAMXG00000016932	lsm4	94	90.977	ENSPSIG00000012358	LSM4	96	90.977	Pelodiscus_sinensis
ENSAMXG00000016932	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	81.884	Peromyscus_maniculatus_bairdii
ENSAMXG00000016932	lsm4	100	90.278	ENSPFOG00000000570	lsm4	76	88.194	Poecilia_formosa
ENSAMXG00000016932	lsm4	100	90.972	ENSPLAG00000016267	lsm4	100	88.194	Poecilia_latipinna
ENSAMXG00000016932	lsm4	100	88.194	ENSPMEG00000016378	lsm4	100	88.194	Poecilia_mexicana
ENSAMXG00000016932	lsm4	100	88.889	ENSPREG00000011290	lsm4	76	88.889	Poecilia_reticulata
ENSAMXG00000016932	lsm4	62	97.727	ENSPPYG00000009736	LSM4	99	84.058	Pongo_abelii
ENSAMXG00000016932	lsm4	86	81.967	ENSPCAG00000008513	LSM4	98	78.049	Procavia_capensis
ENSAMXG00000016932	lsm4	96	83.212	ENSPCOG00000019837	LSM4	99	83.333	Propithecus_coquereli
ENSAMXG00000016932	lsm4	62	97.727	ENSPVAG00000015383	LSM4	99	84.058	Pteropus_vampyrus
ENSAMXG00000016932	lsm4	100	86.395	ENSPNYG00000016794	lsm4	100	87.075	Pundamilia_nyererei
ENSAMXG00000016932	lsm4	95	97.778	ENSPNAG00000016598	lsm4	100	97.778	Pygocentrus_nattereri
ENSAMXG00000016932	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	81.884	Rattus_norvegicus
ENSAMXG00000016932	lsm4	62	97.727	ENSRBIG00000024717	LSM4	99	84.058	Rhinopithecus_bieti
ENSAMXG00000016932	lsm4	62	97.727	ENSRROG00000045706	LSM4	99	84.058	Rhinopithecus_roxellana
ENSAMXG00000016932	lsm4	58	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSAMXG00000016932	lsm4	52	97.297	ENSSBOG00000022455	LSM4	98	78.226	Saimiri_boliviensis_boliviensis
ENSAMXG00000016932	lsm4	96	85.401	ENSSHAG00000011559	LSM4	99	84.783	Sarcophilus_harrisii
ENSAMXG00000016932	lsm4	100	94.366	ENSSFOG00015021067	lsm4	100	94.366	Scleropages_formosus
ENSAMXG00000016932	lsm4	100	76.667	ENSSMAG00000021020	lsm4	100	82.000	Scophthalmus_maximus
ENSAMXG00000016932	lsm4	100	77.381	ENSSDUG00000009588	lsm4	100	74.405	Seriola_dumerili
ENSAMXG00000016932	lsm4	100	76.923	ENSSLDG00000006827	lsm4	100	73.964	Seriola_lalandi_dorsalis
ENSAMXG00000016932	lsm4	61	98.851	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSAMXG00000016932	lsm4	100	84.868	ENSSPAG00000011615	lsm4	100	85.526	Stegastes_partitus
ENSAMXG00000016932	lsm4	62	97.727	ENSSSCG00000034314	LSM4	99	84.058	Sus_scrofa
ENSAMXG00000016932	lsm4	100	89.583	ENSTRUG00000021737	lsm4	100	89.583	Takifugu_rubripes
ENSAMXG00000016932	lsm4	100	90.972	ENSTNIG00000010191	lsm4	100	90.972	Tetraodon_nigroviridis
ENSAMXG00000016932	lsm4	62	97.727	ENSUAMG00000000665	LSM4	98	83.942	Ursus_americanus
ENSAMXG00000016932	lsm4	62	97.727	ENSUMAG00000009013	LSM4	99	84.058	Ursus_maritimus
ENSAMXG00000016932	lsm4	61	97.701	ENSVVUG00000008136	LSM4	70	83.942	Vulpes_vulpes
ENSAMXG00000016932	lsm4	96	81.022	ENSXETG00000024933	lsm4	99	89.781	Xenopus_tropicalis
ENSAMXG00000016932	lsm4	100	91.667	ENSXMAG00000026672	lsm4	76	89.583	Xiphophorus_maculatus