EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000016970 (Gene tree)
Gene ID: 103043866
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 17720 bases
Position: chr18:25845499-25863218
Accession: 103043866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000017467	HRDC	PF00570.23	1.2e-13	1	1
ENSAMXP00000017467	BDHCT	PF08072.11	2.9e-19	1	1
ENSAMXP00000017467	DEAD	PF00270.29	2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000017467	-	4862	XM_007235677	ENSAMXP00000017467	1418 (aa)	XP_007235739	W5LCA5

Gene Model

Click here to download ENSAMXG00000016970's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03440	Homologous recombination	KEGG
amex03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000016970's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000016970	blm	75	54.283	ENSG00000197299	BLM	82	51.053	Homo_sapiens
ENSAMXG00000016970	blm	99	58.472	ENSAPOG00000017966	blm	99	57.778	Acanthochromis_polyacanthus
ENSAMXG00000016970	blm	67	62.065	ENSAMEG00000013843	BLM	63	64.834	Ailuropoda_melanoleuca
ENSAMXG00000016970	blm	99	56.757	ENSACIG00000023762	blm	99	55.922	Amphilophus_citrinellus
ENSAMXG00000016970	blm	99	57.668	ENSAOCG00000003318	blm	99	57.074	Amphiprion_ocellaris
ENSAMXG00000016970	blm	99	56.784	ENSAPEG00000018105	blm	99	56.106	Amphiprion_percula
ENSAMXG00000016970	blm	99	59.191	ENSATEG00000006421	blm	100	58.824	Anabas_testudineus
ENSAMXG00000016970	blm	56	65.736	ENSACAG00000014275	BLM	51	69.242	Anolis_carolinensis
ENSAMXG00000016970	blm	59	63.753	ENSANAG00000038415	BLM	56	69.065	Aotus_nancymaae
ENSAMXG00000016970	blm	99	57.357	ENSACLG00000020354	blm	99	57.027	Astatotilapia_calliptera
ENSAMXG00000016970	blm	58	70.312	ENSBTAG00000020301	BLM	54	70.312	Bos_taurus
ENSAMXG00000016970	blm	59	63.605	ENSCJAG00000009803	BLM	56	68.402	Callithrix_jacchus
ENSAMXG00000016970	blm	59	61.520	ENSCAFG00000012385	BLM	52	67.263	Canis_familiaris
ENSAMXG00000016970	blm	59	61.520	ENSCAFG00020016111	BLM	81	70.896	Canis_lupus_dingo
ENSAMXG00000016970	blm	90	62.269	ENSCHIG00000010329	BLM	91	64.286	Capra_hircus
ENSAMXG00000016970	blm	54	68.456	ENSCAPG00000017976	BLM	54	68.456	Cavia_aperea
ENSAMXG00000016970	blm	87	62.266	ENSCPOG00000001761	BLM	84	65.206	Cavia_porcellus
ENSAMXG00000016970	blm	75	54.446	ENSCATG00000040609	BLM	92	68.464	Cercocebus_atys
ENSAMXG00000016970	blm	88	62.617	ENSCLAG00000012111	BLM	67	66.067	Chinchilla_lanigera
ENSAMXG00000016970	blm	75	54.174	ENSCSAG00000017040	BLM	71	62.777	Chlorocebus_sabaeus
ENSAMXG00000016970	blm	53	51.930	ENSCHOG00000006255	BLM	55	51.930	Choloepus_hoffmanni
ENSAMXG00000016970	blm	82	52.600	ENSCPBG00000025000	BLM	80	65.854	Chrysemys_picta_bellii
ENSAMXG00000016970	blm	63	62.587	ENSCGRG00001024897	Blm	58	65.773	Cricetulus_griseus_chok1gshd
ENSAMXG00000016970	blm	95	55.919	ENSCSEG00000013483	blm	89	59.050	Cynoglossus_semilaevis
ENSAMXG00000016970	blm	99	66.943	ENSDARG00000077089	blm	100	66.875	Danio_rerio
ENSAMXG00000016970	blm	59	60.233	ENSDNOG00000010159	BLM	59	60.185	Dasypus_novemcinctus
ENSAMXG00000016970	blm	59	62.225	ENSDORG00000011033	Blm	75	65.725	Dipodomys_ordii
ENSAMXG00000016970	blm	62	57.143	ENSETEG00000015019	BLM	59	45.000	Echinops_telfairi
ENSAMXG00000016970	blm	68	59.281	ENSEASG00005006727	BLM	89	58.789	Equus_asinus_asinus
ENSAMXG00000016970	blm	59	62.297	ENSECAG00000011405	BLM	99	45.642	Equus_caballus
ENSAMXG00000016970	blm	67	61.298	ENSEEUG00000001434	BLM	69	60.627	Erinaceus_europaeus
ENSAMXG00000016970	blm	99	59.250	ENSELUG00000019098	blm	99	58.075	Esox_lucius
ENSAMXG00000016970	blm	59	61.877	ENSFCAG00000006087	BLM	55	64.968	Felis_catus
ENSAMXG00000016970	blm	88	54.831	ENSFDAG00000012658	BLM	86	57.362	Fukomys_damarensis
ENSAMXG00000016970	blm	99	56.546	ENSFHEG00000002553	blm	99	55.997	Fundulus_heteroclitus
ENSAMXG00000016970	blm	99	53.746	ENSGMOG00000016431	blm	99	65.792	Gadus_morhua
ENSAMXG00000016970	blm	80	51.892	ENSGALG00000008256	BLM	83	64.937	Gallus_gallus
ENSAMXG00000016970	blm	87	71.934	ENSGAFG00000001117	blm	99	55.182	Gambusia_affinis
ENSAMXG00000016970	blm	85	70.370	ENSGACG00000010863	blm	100	84.091	Gasterosteus_aculeatus
ENSAMXG00000016970	blm	64	57.540	ENSGAGG00000005383	BLM	83	69.185	Gopherus_agassizii
ENSAMXG00000016970	blm	75	54.283	ENSGGOG00000007710	BLM	92	67.828	Gorilla_gorilla
ENSAMXG00000016970	blm	99	58.236	ENSHBUG00000015943	blm	99	58.029	Haplochromis_burtoni
ENSAMXG00000016970	blm	69	61.467	ENSHGLG00000013231	BLM	66	64.917	Heterocephalus_glaber_female
ENSAMXG00000016970	blm	75	61.575	ENSHCOG00000011455	blm	89	69.014	Hippocampus_comes
ENSAMXG00000016970	blm	83	74.082	ENSIPUG00000000529	blm	98	72.718	Ictalurus_punctatus
ENSAMXG00000016970	blm	63	61.636	ENSSTOG00000005000	BLM	85	65.434	Ictidomys_tridecemlineatus
ENSAMXG00000016970	blm	59	56.199	ENSJJAG00000016322	Blm	74	59.004	Jaculus_jaculus
ENSAMXG00000016970	blm	99	57.056	ENSKMAG00000016608	blm	99	56.038	Kryptolebias_marmoratus
ENSAMXG00000016970	blm	54	76.147	ENSLBEG00000018729	blm	88	76.147	Labrus_bergylta
ENSAMXG00000016970	blm	75	65.618	ENSLACG00000006490	BLM	74	65.501	Latimeria_chalumnae
ENSAMXG00000016970	blm	99	54.601	ENSLOCG00000014302	blm	99	54.303	Lepisosteus_oculatus
ENSAMXG00000016970	blm	75	54.537	ENSMFAG00000042982	BLM	92	68.464	Macaca_fascicularis
ENSAMXG00000016970	blm	75	54.446	ENSMMUG00000019526	BLM	92	68.464	Macaca_mulatta
ENSAMXG00000016970	blm	75	54.265	ENSMNEG00000031251	BLM	92	68.194	Macaca_nemestrina
ENSAMXG00000016970	blm	75	51.589	ENSMLEG00000032934	BLM	99	44.496	Mandrillus_leucophaeus
ENSAMXG00000016970	blm	99	57.192	ENSMAMG00000008726	blm	99	57.123	Mastacembelus_armatus
ENSAMXG00000016970	blm	99	57.075	ENSMZEG00005022323	blm	99	56.921	Maylandia_zebra
ENSAMXG00000016970	blm	80	52.189	ENSMICG00000034442	BLM	99	45.625	Microcebus_murinus
ENSAMXG00000016970	blm	99	57.143	ENSMMOG00000006959	blm	99	55.915	Mola_mola
ENSAMXG00000016970	blm	87	62.398	ENSMODG00000019449	BLM	87	62.005	Monodelphis_domestica
ENSAMXG00000016970	blm	99	56.696	ENSMALG00000007323	blm	99	56.878	Monopterus_albus
ENSAMXG00000016970	blm	88	61.672	MGP_CAROLIEiJ_G0029907	Blm	58	64.706	Mus_caroli
ENSAMXG00000016970	blm	88	61.672	ENSMUSG00000030528	Blm	57	65.718	Mus_musculus
ENSAMXG00000016970	blm	88	62.209	MGP_PahariEiJ_G0013129	Blm	84	65.345	Mus_pahari
ENSAMXG00000016970	blm	88	61.988	MGP_SPRETEiJ_G0031009	Blm	84	65.290	Mus_spretus
ENSAMXG00000016970	blm	67	51.731	ENSMPUG00000015657	BLM	98	45.856	Mustela_putorius_furo
ENSAMXG00000016970	blm	63	62.097	ENSMLUG00000014697	BLM	64	65.267	Myotis_lucifugus
ENSAMXG00000016970	blm	87	61.538	ENSNGAG00000001275	Blm	58	64.368	Nannospalax_galili
ENSAMXG00000016970	blm	99	56.798	ENSNBRG00000019702	blm	99	56.513	Neolamprologus_brichardi
ENSAMXG00000016970	blm	81	50.293	ENSNLEG00000012087	BLM	99	51.226	Nomascus_leucogenys
ENSAMXG00000016970	blm	51	65.395	ENSOPRG00000011667	BLM	80	64.432	Ochotona_princeps
ENSAMXG00000016970	blm	59	58.068	ENSODEG00000015373	BLM	74	60.746	Octodon_degus
ENSAMXG00000016970	blm	99	55.548	ENSONIG00000015193	blm	99	55.526	Oreochromis_niloticus
ENSAMXG00000016970	blm	54	65.301	ENSOANG00000009316	-	91	68.857	Ornithorhynchus_anatinus
ENSAMXG00000016970	blm	87	61.503	ENSOCUG00000013969	BLM	81	67.490	Oryctolagus_cuniculus
ENSAMXG00000016970	blm	99	58.828	ENSORLG00000008110	blm	99	57.509	Oryzias_latipes
ENSAMXG00000016970	blm	99	58.950	ENSORLG00020004812	blm	99	57.282	Oryzias_latipes_hni
ENSAMXG00000016970	blm	99	58.799	ENSORLG00015018640	blm	99	63.104	Oryzias_latipes_hsok
ENSAMXG00000016970	blm	99	56.889	ENSOMEG00000023545	blm	99	56.174	Oryzias_melastigma
ENSAMXG00000016970	blm	68	60.397	ENSOGAG00000005708	BLM	81	67.862	Otolemur_garnettii
ENSAMXG00000016970	blm	90	62.500	ENSOARG00000012875	BLM	91	47.829	Ovis_aries
ENSAMXG00000016970	blm	75	54.054	ENSPPAG00000032173	BLM	83	50.837	Pan_paniscus
ENSAMXG00000016970	blm	59	62.109	ENSPPRG00000002471	BLM	55	64.968	Panthera_pardus
ENSAMXG00000016970	blm	59	61.761	ENSPTIG00000016168	BLM	55	64.586	Panthera_tigris_altaica
ENSAMXG00000016970	blm	75	53.922	ENSPTRG00000007460	BLM	83	50.797	Pan_troglodytes
ENSAMXG00000016970	blm	75	54.356	ENSPANG00000018572	BLM	92	68.464	Papio_anubis
ENSAMXG00000016970	blm	100	57.367	ENSPKIG00000008954	blm	100	57.064	Paramormyrops_kingsleyae
ENSAMXG00000016970	blm	54	75.403	ENSPMGG00000006629	blm	89	75.000	Periophthalmus_magnuspinnatus
ENSAMXG00000016970	blm	88	63.097	ENSPEMG00000017348	Blm	64	65.944	Peromyscus_maniculatus_bairdii
ENSAMXG00000016970	blm	87	72.052	ENSPFOG00000005059	blm	89	71.948	Poecilia_formosa
ENSAMXG00000016970	blm	87	71.897	ENSPLAG00000017344	blm	89	72.183	Poecilia_latipinna
ENSAMXG00000016970	blm	87	72.170	ENSPMEG00000000321	blm	89	72.066	Poecilia_mexicana
ENSAMXG00000016970	blm	87	72.288	ENSPREG00000007715	blm	99	54.739	Poecilia_reticulata
ENSAMXG00000016970	blm	59	62.049	ENSPPYG00000006784	BLM	72	61.833	Pongo_abelii
ENSAMXG00000016970	blm	59	60.093	ENSPCAG00000008960	BLM	60	59.698	Procavia_capensis
ENSAMXG00000016970	blm	80	47.256	ENSPCOG00000000439	BLM	58	54.259	Propithecus_coquereli
ENSAMXG00000016970	blm	72	77.705	ENSPVAG00000011642	BLM	58	77.705	Pteropus_vampyrus
ENSAMXG00000016970	blm	99	50.910	ENSPNYG00000010956	blm	99	50.302	Pundamilia_nyererei
ENSAMXG00000016970	blm	99	78.877	ENSPNAG00000011714	blm	99	78.316	Pygocentrus_nattereri
ENSAMXG00000016970	blm	88	61.977	ENSRNOG00000011213	Blm	89	62.105	Rattus_norvegicus
ENSAMXG00000016970	blm	75	54.174	ENSRBIG00000029656	BLM	92	68.365	Rhinopithecus_bieti
ENSAMXG00000016970	blm	75	54.083	ENSRROG00000037871	BLM	92	68.365	Rhinopithecus_roxellana
ENSAMXG00000016970	blm	86	62.024	ENSSHAG00000007988	BLM	59	61.502	Sarcophilus_harrisii
ENSAMXG00000016970	blm	67	70.692	ENSSFOG00015015462	blm	76	70.187	Scleropages_formosus
ENSAMXG00000016970	blm	99	56.104	ENSSMAG00000001120	blm	99	56.690	Scophthalmus_maximus
ENSAMXG00000016970	blm	99	57.495	ENSSDUG00000010955	blm	99	57.270	Seriola_dumerili
ENSAMXG00000016970	blm	99	57.201	ENSSLDG00000000634	blm	99	57.369	Seriola_lalandi_dorsalis
ENSAMXG00000016970	blm	75	50.414	ENSSARG00000006398	BLM	79	49.218	Sorex_araneus
ENSAMXG00000016970	blm	61	59.954	ENSSPUG00000000013	BLM	71	62.972	Sphenodon_punctatus
ENSAMXG00000016970	blm	99	58.413	ENSSPAG00000013999	blm	99	57.270	Stegastes_partitus
ENSAMXG00000016970	blm	59	59.740	ENSSSCG00000001816	BLM	52	62.549	Sus_scrofa
ENSAMXG00000016970	blm	68	53.846	ENSTGUG00000009959	-	84	54.545	Taeniopygia_guttata
ENSAMXG00000016970	blm	82	60.994	ENSTRUG00000019860	blm	100	54.089	Takifugu_rubripes
ENSAMXG00000016970	blm	99	55.000	ENSTNIG00000019246	blm	100	53.488	Tetraodon_nigroviridis
ENSAMXG00000016970	blm	59	62.153	ENSTTRG00000016386	BLM	56	65.019	Tursiops_truncatus
ENSAMXG00000016970	blm	59	61.833	ENSUMAG00000009105	BLM	94	68.487	Ursus_maritimus
ENSAMXG00000016970	blm	59	59.028	ENSVPAG00000000085	BLM	51	63.961	Vicugna_pacos
ENSAMXG00000016970	blm	52	69.615	ENSVVUG00000006402	BLM	51	67.631	Vulpes_vulpes
ENSAMXG00000016970	blm	88	63.521	ENSXETG00000007847	blm	78	71.248	Xenopus_tropicalis
ENSAMXG00000016970	blm	73	69.693	ENSXCOG00000020227	blm	99	52.525	Xiphophorus_couchianus
ENSAMXG00000016970	blm	87	72.288	ENSXMAG00000002951	blm	89	72.066	Xiphophorus_maculatus