EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000017108 (Gene tree)
Gene ID: 103033637
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10099 bases
Position: chr14:15907719-15917817
Accession: 103033637
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040190	TruB_N	PF01509.18	2.9e-21	1	1
ENSAMXP00000017658	TruB_N	PF01509.18	4.2e-20	1	1
ENSAMXP00000040190	PUA	PF01472.20	9.5e-17	1	1
ENSAMXP00000017658	PUA	PF01472.20	2.1e-16	1	1
ENSAMXP00000040190	DKCLD	PF08068.12	9.3e-31	1	1
ENSAMXP00000017658	DKCLD	PF08068.12	9.6e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000017658	-	1702	XM_022676237	ENSAMXP00000017658	517 (aa)	XP_022531958	W5LCU6
ENSAMXT00000051670	-	1515	-	ENSAMXP00000040190	504 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000017108's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017108's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017108	dkc1	87	79.266	ENSG00000130826	DKC1	99	88.293	Homo_sapiens
ENSAMXG00000017108	dkc1	99	81.942	ENSAPOG00000007799	dkc1	89	86.813	Acanthochromis_polyacanthus
ENSAMXG00000017108	dkc1	88	80.180	ENSAMEG00000002776	DKC1	86	81.693	Ailuropoda_melanoleuca
ENSAMXG00000017108	dkc1	85	89.227	ENSACIG00000022614	dkc1	94	85.333	Amphilophus_citrinellus
ENSAMXG00000017108	dkc1	99	82.846	ENSAOCG00000013159	dkc1	87	88.345	Amphiprion_ocellaris
ENSAMXG00000017108	dkc1	99	82.846	ENSAPEG00000002284	dkc1	87	88.837	Amphiprion_percula
ENSAMXG00000017108	dkc1	86	85.068	ENSATEG00000013682	dkc1	86	85.261	Anabas_testudineus
ENSAMXG00000017108	dkc1	87	80.217	ENSACAG00000015600	DKC1	79	80.217	Anolis_carolinensis
ENSAMXG00000017108	dkc1	88	78.755	ENSANAG00000022732	DKC1	85	81.859	Aotus_nancymaae
ENSAMXG00000017108	dkc1	93	82.573	ENSACLG00000015605	dkc1	94	81.779	Astatotilapia_calliptera
ENSAMXG00000017108	dkc1	87	79.221	ENSBTAG00000013045	DKC1	88	80.537	Bos_taurus
ENSAMXG00000017108	dkc1	81	65.111	WBGene00010478	K01G5.5	95	63.443	Caenorhabditis_elegans
ENSAMXG00000017108	dkc1	88	78.326	ENSCJAG00000004210	DKC1	85	80.813	Callithrix_jacchus
ENSAMXG00000017108	dkc1	90	77.632	ENSCAFG00000019620	-	86	79.505	Canis_familiaris
ENSAMXG00000017108	dkc1	79	76.574	ENSCAFG00000009311	-	86	71.789	Canis_familiaris
ENSAMXG00000017108	dkc1	79	75.819	ENSCAFG00020009379	-	82	71.759	Canis_lupus_dingo
ENSAMXG00000017108	dkc1	90	77.632	ENSCAFG00020008918	-	86	79.505	Canis_lupus_dingo
ENSAMXG00000017108	dkc1	87	79.221	ENSCHIG00000017392	DKC1	88	80.537	Capra_hircus
ENSAMXG00000017108	dkc1	93	76.730	ENSTSYG00000007681	DKC1	87	78.947	Carlito_syrichta
ENSAMXG00000017108	dkc1	73	88.011	ENSCAPG00000003342	DKC1	93	81.265	Cavia_aperea
ENSAMXG00000017108	dkc1	87	79.266	ENSCPOG00000008825	DKC1	87	80.580	Cavia_porcellus
ENSAMXG00000017108	dkc1	87	69.828	ENSCCAG00000027418	DKC1	89	69.828	Cebus_capucinus
ENSAMXG00000017108	dkc1	87	79.266	ENSCATG00000033602	DKC1	87	80.580	Cercocebus_atys
ENSAMXG00000017108	dkc1	84	80.952	ENSCLAG00000000720	DKC1	88	80.313	Chinchilla_lanigera
ENSAMXG00000017108	dkc1	87	79.266	ENSCSAG00000006706	DKC1	87	80.580	Chlorocebus_sabaeus
ENSAMXG00000017108	dkc1	88	80.392	ENSCPBG00000005858	DKC1	93	82.380	Chrysemys_picta_bellii
ENSAMXG00000017108	dkc1	86	74.943	ENSCING00000004599	-	83	77.442	Ciona_intestinalis
ENSAMXG00000017108	dkc1	92	69.979	ENSCSAVG00000010047	-	91	78.133	Ciona_savignyi
ENSAMXG00000017108	dkc1	87	79.266	ENSCANG00000027987	DKC1	87	80.580	Colobus_angolensis_palliatus
ENSAMXG00000017108	dkc1	88	79.684	ENSCGRG00001014574	-	85	80.499	Cricetulus_griseus_chok1gshd
ENSAMXG00000017108	dkc1	75	67.196	ENSCGRG00001016789	-	79	67.568	Cricetulus_griseus_chok1gshd
ENSAMXG00000017108	dkc1	88	79.684	ENSCGRG00000016075	-	85	80.499	Cricetulus_griseus_crigri
ENSAMXG00000017108	dkc1	75	67.196	ENSCGRG00000014809	-	77	67.568	Cricetulus_griseus_crigri
ENSAMXG00000017108	dkc1	94	82.241	ENSCSEG00000012633	dkc1	96	81.498	Cynoglossus_semilaevis
ENSAMXG00000017108	dkc1	86	87.615	ENSCVAG00000010155	dkc1	88	86.031	Cyprinodon_variegatus
ENSAMXG00000017108	dkc1	82	93.269	ENSDARG00000016484	dkc1	89	91.228	Danio_rerio
ENSAMXG00000017108	dkc1	88	79.821	ENSDNOG00000004218	DKC1	86	81.124	Dasypus_novemcinctus
ENSAMXG00000017108	dkc1	55	72.760	ENSDORG00000013566	-	92	72.760	Dipodomys_ordii
ENSAMXG00000017108	dkc1	84	71.461	FBgn0259937	Nop60B	89	69.951	Drosophila_melanogaster
ENSAMXG00000017108	dkc1	79	85.176	ENSETEG00000016095	DKC1	81	85.176	Echinops_telfairi
ENSAMXG00000017108	dkc1	66	77.910	ENSEBUG00000015962	dkc1	98	81.787	Eptatretus_burgeri
ENSAMXG00000017108	dkc1	88	78.761	ENSEASG00005007484	DKC1	87	77.802	Equus_asinus_asinus
ENSAMXG00000017108	dkc1	88	78.761	ENSECAG00000023524	DKC1	87	77.802	Equus_caballus
ENSAMXG00000017108	dkc1	77	86.410	ENSEEUG00000003323	DKC1	98	82.974	Erinaceus_europaeus
ENSAMXG00000017108	dkc1	89	87.885	ENSELUG00000014538	dkc1	90	88.671	Esox_lucius
ENSAMXG00000017108	dkc1	79	85.965	ENSFCAG00000006577	DKC1	86	80.876	Felis_catus
ENSAMXG00000017108	dkc1	79	86.881	ENSFALG00000011496	DKC1	85	82.063	Ficedula_albicollis
ENSAMXG00000017108	dkc1	85	80.974	ENSFDAG00000002516	DKC1	87	81.206	Fukomys_damarensis
ENSAMXG00000017108	dkc1	84	88.863	ENSFHEG00000004627	dkc1	90	85.275	Fundulus_heteroclitus
ENSAMXG00000017108	dkc1	78	90.281	ENSGMOG00000017277	dkc1	100	90.281	Gadus_morhua
ENSAMXG00000017108	dkc1	88	80.269	ENSGALG00000005054	DKC1	89	81.562	Gallus_gallus
ENSAMXG00000017108	dkc1	86	86.437	ENSGAFG00000011486	dkc1	77	85.275	Gambusia_affinis
ENSAMXG00000017108	dkc1	81	91.687	ENSGACG00000004373	dkc1	99	91.687	Gasterosteus_aculeatus
ENSAMXG00000017108	dkc1	88	80.610	ENSGAGG00000011330	DKC1	89	80.694	Gopherus_agassizii
ENSAMXG00000017108	dkc1	87	79.266	ENSGGOG00000001045	DKC1	87	80.580	Gorilla_gorilla
ENSAMXG00000017108	dkc1	99	83.041	ENSHBUG00000012436	dkc1	90	85.495	Haplochromis_burtoni
ENSAMXG00000017108	dkc1	79	85.965	ENSHGLG00000000649	DKC1	87	79.823	Heterocephalus_glaber_female
ENSAMXG00000017108	dkc1	79	85.965	ENSHGLG00100001153	DKC1	88	79.823	Heterocephalus_glaber_male
ENSAMXG00000017108	dkc1	87	85.268	ENSHCOG00000021099	dkc1	85	87.007	Hippocampus_comes
ENSAMXG00000017108	dkc1	87	93.013	ENSIPUG00000010309	dkc1	89	93.059	Ictalurus_punctatus
ENSAMXG00000017108	dkc1	87	73.230	ENSSTOG00000020149	-	85	74.769	Ictidomys_tridecemlineatus
ENSAMXG00000017108	dkc1	79	86.216	ENSSTOG00000001074	-	92	79.510	Ictidomys_tridecemlineatus
ENSAMXG00000017108	dkc1	93	66.880	ENSSTOG00000011904	-	83	69.333	Ictidomys_tridecemlineatus
ENSAMXG00000017108	dkc1	55	73.551	ENSJJAG00000010086	-	91	73.551	Jaculus_jaculus
ENSAMXG00000017108	dkc1	85	86.247	ENSKMAG00000008010	dkc1	86	86.175	Kryptolebias_marmoratus
ENSAMXG00000017108	dkc1	84	88.318	ENSLBEG00000019122	dkc1	93	86.593	Labrus_bergylta
ENSAMXG00000017108	dkc1	87	83.260	ENSLACG00000014025	DKC1	94	86.473	Latimeria_chalumnae
ENSAMXG00000017108	dkc1	84	89.401	ENSLOCG00000013713	dkc1	88	90.521	Lepisosteus_oculatus
ENSAMXG00000017108	dkc1	84	80.631	ENSLAFG00000000221	DKC1	86	80.631	Loxodonta_africana
ENSAMXG00000017108	dkc1	88	78.755	ENSMFAG00000032398	DKC1	74	81.222	Macaca_fascicularis
ENSAMXG00000017108	dkc1	87	79.266	ENSMMUG00000005768	DKC1	87	80.580	Macaca_mulatta
ENSAMXG00000017108	dkc1	87	79.266	ENSMNEG00000034503	DKC1	87	80.580	Macaca_nemestrina
ENSAMXG00000017108	dkc1	87	79.266	ENSMLEG00000034422	DKC1	87	80.580	Mandrillus_leucophaeus
ENSAMXG00000017108	dkc1	80	93.548	ENSMAMG00000005427	dkc1	90	93.766	Mastacembelus_armatus
ENSAMXG00000017108	dkc1	99	83.236	ENSMZEG00005014503	dkc1	90	85.714	Maylandia_zebra
ENSAMXG00000017108	dkc1	81	82.108	ENSMGAG00000009238	DKC1	88	84.483	Meleagris_gallopavo
ENSAMXG00000017108	dkc1	58	70.068	ENSMAUG00000016454	-	100	69.667	Mesocricetus_auratus
ENSAMXG00000017108	dkc1	79	85.464	ENSMICG00000038751	-	82	84.352	Microcebus_murinus
ENSAMXG00000017108	dkc1	77	73.039	ENSMICG00000002818	-	99	75.824	Microcebus_murinus
ENSAMXG00000017108	dkc1	55	69.176	ENSMOCG00000001169	-	92	69.176	Microtus_ochrogaster
ENSAMXG00000017108	dkc1	79	92.982	ENSMMOG00000020348	dkc1	87	93.216	Mola_mola
ENSAMXG00000017108	dkc1	88	78.378	ENSMODG00000009243	DKC1	80	75.705	Monodelphis_domestica
ENSAMXG00000017108	dkc1	85	87.500	ENSMALG00000009454	dkc1	85	86.957	Monopterus_albus
ENSAMXG00000017108	dkc1	79	74.815	MGP_CAROLIEiJ_G0033191	Dkc1	86	81.746	Mus_caroli
ENSAMXG00000017108	dkc1	88	78.541	ENSMUSG00000031403	Dkc1	87	80.674	Mus_musculus
ENSAMXG00000017108	dkc1	87	78.448	MGP_PahariEiJ_G0031735	Dkc1	86	80.587	Mus_pahari
ENSAMXG00000017108	dkc1	88	78.541	MGP_SPRETEiJ_G0034351	Dkc1	87	80.674	Mus_spretus
ENSAMXG00000017108	dkc1	88	79.464	ENSMPUG00000016136	DKC1	74	86.216	Mustela_putorius_furo
ENSAMXG00000017108	dkc1	97	71.203	ENSMLUG00000011918	DKC1	93	70.161	Myotis_lucifugus
ENSAMXG00000017108	dkc1	55	72.043	ENSNGAG00000015724	-	92	72.043	Nannospalax_galili
ENSAMXG00000017108	dkc1	79	92.947	ENSNBRG00000005638	dkc1	80	92.714	Neolamprologus_brichardi
ENSAMXG00000017108	dkc1	87	79.482	ENSNLEG00000014323	DKC1	87	80.804	Nomascus_leucogenys
ENSAMXG00000017108	dkc1	80	81.343	ENSMEUG00000001066	DKC1	92	78.810	Notamacropus_eugenii
ENSAMXG00000017108	dkc1	69	80.286	ENSOPRG00000005248	DKC1	70	80.286	Ochotona_princeps
ENSAMXG00000017108	dkc1	55	72.043	ENSODEG00000000549	-	92	72.043	Octodon_degus
ENSAMXG00000017108	dkc1	79	87.719	ENSODEG00000011816	-	86	82.766	Octodon_degus
ENSAMXG00000017108	dkc1	93	83.716	ENSONIG00000013889	dkc1	86	87.643	Oreochromis_niloticus
ENSAMXG00000017108	dkc1	82	84.954	ENSOANG00000008713	-	89	84.368	Ornithorhynchus_anatinus
ENSAMXG00000017108	dkc1	56	63.158	ENSOANG00000022295	-	86	62.541	Ornithorhynchus_anatinus
ENSAMXG00000017108	dkc1	98	73.218	ENSOCUG00000012646	DKC1	98	71.869	Oryctolagus_cuniculus
ENSAMXG00000017108	dkc1	84	88.000	ENSORLG00000018748	dkc1	84	87.383	Oryzias_latipes
ENSAMXG00000017108	dkc1	87	84.513	ENSOMEG00000005786	dkc1	83	88.382	Oryzias_melastigma
ENSAMXG00000017108	dkc1	79	87.218	ENSOGAG00000003399	DKC1	80	84.524	Otolemur_garnettii
ENSAMXG00000017108	dkc1	83	81.633	ENSOARG00000003047	DKC1	88	80.761	Ovis_aries
ENSAMXG00000017108	dkc1	79	86.717	ENSPPAG00000023820	DKC1	87	80.804	Pan_paniscus
ENSAMXG00000017108	dkc1	79	85.965	ENSPPRG00000009104	DKC1	86	80.876	Panthera_pardus
ENSAMXG00000017108	dkc1	83	82.857	ENSPTIG00000017469	DKC1	85	82.857	Panthera_tigris_altaica
ENSAMXG00000017108	dkc1	87	79.266	ENSPTRG00000022449	DKC1	87	80.580	Pan_troglodytes
ENSAMXG00000017108	dkc1	87	79.266	ENSPTRG00000043416	-	75	81.448	Pan_troglodytes
ENSAMXG00000017108	dkc1	87	79.266	ENSPANG00000011978	DKC1	87	80.580	Papio_anubis
ENSAMXG00000017108	dkc1	85	88.356	ENSPKIG00000008443	dkc1	92	88.532	Paramormyrops_kingsleyae
ENSAMXG00000017108	dkc1	71	89.385	ENSPSIG00000013765	DKC1	86	89.385	Pelodiscus_sinensis
ENSAMXG00000017108	dkc1	92	79.012	ENSPMGG00000004097	dkc1	82	80.889	Periophthalmus_magnuspinnatus
ENSAMXG00000017108	dkc1	73	83.978	ENSPEMG00000013348	Dkc1	84	83.978	Peromyscus_maniculatus_bairdii
ENSAMXG00000017108	dkc1	80	85.075	ENSPCIG00000016706	DKC1	76	79.379	Phascolarctos_cinereus
ENSAMXG00000017108	dkc1	85	87.037	ENSPFOG00000018653	dkc1	90	85.275	Poecilia_formosa
ENSAMXG00000017108	dkc1	85	87.037	ENSPLAG00000003272	dkc1	81	85.275	Poecilia_latipinna
ENSAMXG00000017108	dkc1	85	87.037	ENSPMEG00000010413	dkc1	90	85.275	Poecilia_mexicana
ENSAMXG00000017108	dkc1	85	87.500	ENSPREG00000004100	dkc1	85	86.957	Poecilia_reticulata
ENSAMXG00000017108	dkc1	79	86.717	ENSPPYG00000020892	DKC1	88	80.580	Pongo_abelii
ENSAMXG00000017108	dkc1	72	87.879	ENSPCAG00000015034	DKC1	71	87.879	Procavia_capensis
ENSAMXG00000017108	dkc1	87	78.618	ENSPCOG00000026874	DKC1	86	80.631	Propithecus_coquereli
ENSAMXG00000017108	dkc1	84	80.278	ENSPVAG00000009222	DKC1	87	80.734	Pteropus_vampyrus
ENSAMXG00000017108	dkc1	92	80.943	ENSPNYG00000020063	dkc1	89	85.011	Pundamilia_nyererei
ENSAMXG00000017108	dkc1	91	93.291	ENSPNAG00000005780	dkc1	90	92.088	Pygocentrus_nattereri
ENSAMXG00000017108	dkc1	83	77.602	ENSRNOG00000055562	Dkc1	86	77.602	Rattus_norvegicus
ENSAMXG00000017108	dkc1	87	79.266	ENSRBIG00000028457	DKC1	75	80.580	Rhinopithecus_bieti
ENSAMXG00000017108	dkc1	87	79.266	ENSRROG00000044780	DKC1	87	80.580	Rhinopithecus_roxellana
ENSAMXG00000017108	dkc1	76	71.802	YLR175W	-	98	61.635	Saccharomyces_cerevisiae
ENSAMXG00000017108	dkc1	88	78.755	ENSSBOG00000033746	DKC1	86	80.899	Saimiri_boliviensis_boliviensis
ENSAMXG00000017108	dkc1	83	82.217	ENSSHAG00000002463	DKC1	92	81.922	Sarcophilus_harrisii
ENSAMXG00000017108	dkc1	88	88.889	ENSSFOG00015009585	dkc1	90	88.889	Scleropages_formosus
ENSAMXG00000017108	dkc1	88	87.220	ENSSMAG00000002552	dkc1	88	86.784	Scophthalmus_maximus
ENSAMXG00000017108	dkc1	95	83.299	ENSSDUG00000009963	dkc1	89	85.934	Seriola_dumerili
ENSAMXG00000017108	dkc1	94	83.087	ENSSLDG00000019342	dkc1	91	86.270	Seriola_lalandi_dorsalis
ENSAMXG00000017108	dkc1	79	81.454	ENSSARG00000001822	DKC1	88	75.446	Sorex_araneus
ENSAMXG00000017108	dkc1	80	84.826	ENSSPUG00000018907	DKC1	90	77.311	Sphenodon_punctatus
ENSAMXG00000017108	dkc1	93	84.322	ENSSPAG00000002585	dkc1	85	86.444	Stegastes_partitus
ENSAMXG00000017108	dkc1	79	86.216	ENSSSCG00000012823	DKC1	91	81.106	Sus_scrofa
ENSAMXG00000017108	dkc1	72	90.884	ENSTGUG00000006781	DKC1	89	85.572	Taeniopygia_guttata
ENSAMXG00000017108	dkc1	92	81.513	ENSTRUG00000004413	dkc1	86	87.442	Takifugu_rubripes
ENSAMXG00000017108	dkc1	85	69.575	ENSTNIG00000002582	dkc1	87	70.022	Tetraodon_nigroviridis
ENSAMXG00000017108	dkc1	54	87.407	ENSTBEG00000011262	DKC1	85	79.167	Tupaia_belangeri
ENSAMXG00000017108	dkc1	55	88.087	ENSTTRG00000008089	DKC1	55	88.087	Tursiops_truncatus
ENSAMXG00000017108	dkc1	92	77.970	ENSUAMG00000022721	DKC1	88	84.173	Ursus_americanus
ENSAMXG00000017108	dkc1	92	77.538	ENSUMAG00000016899	DKC1	97	84.422	Ursus_maritimus
ENSAMXG00000017108	dkc1	79	84.483	ENSVVUG00000020734	-	78	78.049	Vulpes_vulpes
ENSAMXG00000017108	dkc1	79	71.537	ENSVVUG00000021671	-	81	67.356	Vulpes_vulpes
ENSAMXG00000017108	dkc1	100	76.108	ENSXETG00000032517	DKC1	89	82.119	Xenopus_tropicalis
ENSAMXG00000017108	dkc1	86	86.270	ENSXCOG00000005498	dkc1	93	86.667	Xiphophorus_couchianus
ENSAMXG00000017108	dkc1	85	86.343	ENSXMAG00000004919	dkc1	90	84.735	Xiphophorus_maculatus