EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017167 (Gene tree)
Gene ID: 103039934
Gene Symbol: bicc2
Alias: bicc1a
Full Name: protein bicaudal C homolog 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 39986 bases
Position: chrAPWO02000055.1:440641-480626
Accession: 103039934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000017664	KH_1	PF00013.29	1.3e-25	1	1
ENSAMXP00000028866	KH_1	PF00013.29	2.2e-25	1	1
ENSAMXP00000047410	KH_1	PF00013.29	2.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000017664	-	2463	-	ENSAMXP00000017664	820 (aa)	-	W5LCV2
ENSAMXT00000033370	-	3608	XM_022665578	ENSAMXP00000047410	904 (aa)	XP_022521299	UPI000BBD9697
ENSAMXT00000034744	-	3458	XM_022665577	ENSAMXP00000028866	904 (aa)	XP_022521298	UPI000BBD9697

Gene Model

Click here to download ENSAMXG00000017167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017167	bicc2	75	56.086	ENSAMXG00000030961	bicc1b	68	57.072
ENSAMXG00000017167	bicc2	60	66.154	ENSAMXG00000011396	bicc1a	58	66.154

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017167	bicc2	85	80.808	ENSAPOG00000019115	bicc2	96	60.606	Acanthochromis_polyacanthus
ENSAMXG00000017167	bicc2	91	61.874	ENSAOCG00000021728	bicc2	96	61.230	Amphiprion_ocellaris
ENSAMXG00000017167	bicc2	85	78.788	ENSAPEG00000015354	bicc2	93	60.979	Amphiprion_percula
ENSAMXG00000017167	bicc2	82	68.583	ENSATEG00000009479	bicc2	94	60.433	Anabas_testudineus
ENSAMXG00000017167	bicc2	84	75.758	ENSACLG00000010291	bicc2	100	60.702	Astatotilapia_calliptera
ENSAMXG00000017167	bicc2	81	84.375	ENSCSEG00000006475	bicc2	92	60.914	Cynoglossus_semilaevis
ENSAMXG00000017167	bicc2	86	74.747	ENSCVAG00000011501	bicc2	94	59.696	Cyprinodon_variegatus
ENSAMXG00000017167	bicc2	92	70.248	ENSDARG00000076557	bicc2	96	69.765	Danio_rerio
ENSAMXG00000017167	bicc2	85	72.289	ENSELUG00000018740	bicc2	91	60.089	Esox_lucius
ENSAMXG00000017167	bicc2	92	51.348	ENSFHEG00000022640	bicc2	88	60.748	Fundulus_heteroclitus
ENSAMXG00000017167	bicc2	80	71.071	ENSGMOG00000009682	bicc2	90	71.071	Gadus_morhua
ENSAMXG00000017167	bicc2	91	59.312	ENSGAFG00000009167	bicc2	95	59.193	Gambusia_affinis
ENSAMXG00000017167	bicc2	91	60.226	ENSGACG00000017939	bicc2	93	60.327	Gasterosteus_aculeatus
ENSAMXG00000017167	bicc2	85	75.758	ENSHBUG00000009003	bicc2	84	69.753	Haplochromis_burtoni
ENSAMXG00000017167	bicc2	91	61.438	ENSHCOG00000014603	bicc2	88	74.528	Hippocampus_comes
ENSAMXG00000017167	bicc2	99	74.834	ENSIPUG00000008968	bicc2	100	74.559	Ictalurus_punctatus
ENSAMXG00000017167	bicc2	58	67.216	ENSKMAG00000009505	bicc2	74	64.394	Kryptolebias_marmoratus
ENSAMXG00000017167	bicc2	91	61.175	ENSLBEG00000001155	bicc2	94	61.061	Labrus_bergylta
ENSAMXG00000017167	bicc2	63	69.048	ENSLACG00000013687	-	63	69.048	Latimeria_chalumnae
ENSAMXG00000017167	bicc2	83	71.429	ENSLOCG00000011365	bicc2	96	58.207	Lepisosteus_oculatus
ENSAMXG00000017167	bicc2	91	61.270	ENSMAMG00000006344	bicc2	92	61.728	Mastacembelus_armatus
ENSAMXG00000017167	bicc2	91	59.064	ENSMZEG00005000357	bicc2	91	59.613	Maylandia_zebra
ENSAMXG00000017167	bicc2	91	69.037	ENSMMOG00000002840	bicc2	100	64.301	Mola_mola
ENSAMXG00000017167	bicc2	93	61.491	ENSMALG00000011735	bicc2	91	60.427	Monopterus_albus
ENSAMXG00000017167	bicc2	85	69.355	ENSONIG00000004936	bicc2	98	60.782	Oreochromis_niloticus
ENSAMXG00000017167	bicc2	86	74.561	ENSORLG00000004346	bicc2	93	61.182	Oryzias_latipes
ENSAMXG00000017167	bicc2	94	58.593	ENSORLG00020014233	bicc2	94	60.127	Oryzias_latipes_hni
ENSAMXG00000017167	bicc2	90	74.561	ENSORLG00015021684	bicc2	92	61.827	Oryzias_latipes_hsok
ENSAMXG00000017167	bicc2	91	71.930	ENSOMEG00000004070	bicc2	92	60.233	Oryzias_melastigma
ENSAMXG00000017167	bicc2	91	59.976	ENSPKIG00000015555	bicc2	92	59.857	Paramormyrops_kingsleyae
ENSAMXG00000017167	bicc2	96	59.774	ENSPMGG00000021752	bicc2	96	59.665	Periophthalmus_magnuspinnatus
ENSAMXG00000017167	bicc2	91	60.331	ENSPFOG00000000640	bicc2	94	59.302	Poecilia_formosa
ENSAMXG00000017167	bicc2	82	67.081	ENSPLAG00000011230	bicc2	91	67.081	Poecilia_latipinna
ENSAMXG00000017167	bicc2	78	66.886	ENSPMEG00000003438	bicc2	98	66.886	Poecilia_mexicana
ENSAMXG00000017167	bicc2	81	74.528	ENSPREG00000001918	bicc2	93	60.279	Poecilia_reticulata
ENSAMXG00000017167	bicc2	85	75.758	ENSPNYG00000001673	bicc2	91	59.613	Pundamilia_nyererei
ENSAMXG00000017167	bicc2	89	85.171	ENSPNAG00000011311	bicc2	99	84.411	Pygocentrus_nattereri
ENSAMXG00000017167	bicc2	95	53.366	ENSSFOG00015003080	bicc2	96	53.308	Scleropages_formosus
ENSAMXG00000017167	bicc2	94	63.636	ENSSMAG00000001751	bicc2	96	59.530	Scophthalmus_maximus
ENSAMXG00000017167	bicc2	91	62.013	ENSSDUG00000002631	bicc2	93	61.242	Seriola_dumerili
ENSAMXG00000017167	bicc2	89	67.407	ENSSLDG00000001984	bicc2	92	62.890	Seriola_lalandi_dorsalis
ENSAMXG00000017167	bicc2	91	61.558	ENSSPAG00000016923	bicc2	93	60.510	Stegastes_partitus
ENSAMXG00000017167	bicc2	82	65.010	ENSTRUG00000010821	bicc2	90	64.431	Takifugu_rubripes
ENSAMXG00000017167	bicc2	92	60.047	ENSTNIG00000014205	bicc2	95	58.810	Tetraodon_nigroviridis
ENSAMXG00000017167	bicc2	59	66.935	ENSXCOG00000002192	bicc2	88	67.695	Xiphophorus_couchianus
ENSAMXG00000017167	bicc2	86	74.528	ENSXMAG00000013618	bicc2	93	59.631	Xiphophorus_maculatus