EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000017326 (Gene tree)
Gene ID: 103045565
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 23804 bases
Position: chr20:35848119-35871922
Accession: 103045565
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000017937	EST1	PF10374.9	2.8e-14	1	1
ENSAMXP00000017937	EST1_DNA_bind	PF10373.9	1.2e-61	1	1
ENSAMXP00000017937	PIN_4	PF13638.6	2.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000017937	-	4080	XM_007229772	ENSAMXP00000017937	1359 (aa)	XP_007229834	W5LDM5

Gene Model

Click here to download ENSAMXG00000017326's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017326's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017326	smg6	99	50.448	ENSG00000070366	SMG6	100	62.405	Homo_sapiens
ENSAMXG00000017326	smg6	96	68.633	ENSAPOG00000019448	smg6	75	67.615	Acanthochromis_polyacanthus
ENSAMXG00000017326	smg6	98	51.059	ENSAMEG00000007632	SMG6	69	63.169	Ailuropoda_melanoleuca
ENSAMXG00000017326	smg6	83	70.000	ENSACIG00000012997	smg6	70	70.097	Amphilophus_citrinellus
ENSAMXG00000017326	smg6	98	68.258	ENSAOCG00000002630	smg6	72	69.350	Amphiprion_ocellaris
ENSAMXG00000017326	smg6	98	68.071	ENSAPEG00000019101	smg6	72	69.156	Amphiprion_percula
ENSAMXG00000017326	smg6	90	67.573	ENSATEG00000006483	smg6	79	68.835	Anabas_testudineus
ENSAMXG00000017326	smg6	99	50.312	ENSANAG00000035760	SMG6	68	62.866	Aotus_nancymaae
ENSAMXG00000017326	smg6	93	67.891	ENSACLG00000005288	smg6	77	65.740	Astatotilapia_calliptera
ENSAMXG00000017326	smg6	98	51.049	ENSBTAG00000000267	SMG6	69	63.370	Bos_taurus
ENSAMXG00000017326	smg6	99	50.446	ENSCJAG00000001820	SMG6	68	62.866	Callithrix_jacchus
ENSAMXG00000017326	smg6	98	51.291	ENSCAFG00000019260	SMG6	72	62.368	Canis_familiaris
ENSAMXG00000017326	smg6	98	51.291	ENSCAFG00020009770	SMG6	72	62.368	Canis_lupus_dingo
ENSAMXG00000017326	smg6	98	50.840	ENSCHIG00000021998	SMG6	69	63.269	Capra_hircus
ENSAMXG00000017326	smg6	99	49.931	ENSTSYG00000003406	SMG6	100	61.641	Carlito_syrichta
ENSAMXG00000017326	smg6	90	56.968	ENSCAPG00000016197	SMG6	63	57.045	Cavia_aperea
ENSAMXG00000017326	smg6	99	49.483	ENSCPOG00000014878	SMG6	90	58.636	Cavia_porcellus
ENSAMXG00000017326	smg6	99	50.342	ENSCCAG00000035801	SMG6	68	63.068	Cebus_capucinus
ENSAMXG00000017326	smg6	99	50.450	ENSCATG00000031956	SMG6	68	63.068	Cercocebus_atys
ENSAMXG00000017326	smg6	99	49.620	ENSCLAG00000006748	SMG6	90	56.828	Chinchilla_lanigera
ENSAMXG00000017326	smg6	99	50.587	ENSCSAG00000013800	SMG6	73	61.349	Chlorocebus_sabaeus
ENSAMXG00000017326	smg6	98	50.561	ENSCPBG00000020369	SMG6	68	62.146	Chrysemys_picta_bellii
ENSAMXG00000017326	smg6	98	51.262	ENSCANG00000031764	SMG6	100	62.786	Colobus_angolensis_palliatus
ENSAMXG00000017326	smg6	98	46.723	ENSCGRG00000007782	Smg6	73	56.196	Cricetulus_griseus_crigri
ENSAMXG00000017326	smg6	88	66.760	ENSCSEG00000012757	smg6	71	67.670	Cynoglossus_semilaevis
ENSAMXG00000017326	smg6	88	65.088	ENSCVAG00000012789	smg6	84	65.492	Cyprinodon_variegatus
ENSAMXG00000017326	smg6	98	74.810	ENSDARG00000100481	smg6	89	75.524	Danio_rerio
ENSAMXG00000017326	smg6	72	61.576	ENSDNOG00000048283	SMG6	68	62.866	Dasypus_novemcinctus
ENSAMXG00000017326	smg6	99	46.953	ENSDORG00000016614	Smg6	85	60.096	Dipodomys_ordii
ENSAMXG00000017326	smg6	92	90.244	ENSETEG00000016790	SMG6	61	90.244	Echinops_telfairi
ENSAMXG00000017326	smg6	66	50.463	ENSEBUG00000005059	smg6	65	48.594	Eptatretus_burgeri
ENSAMXG00000017326	smg6	98	51.370	ENSEASG00005009318	SMG6	68	63.296	Equus_asinus_asinus
ENSAMXG00000017326	smg6	98	51.406	ENSECAG00000006519	SMG6	68	63.498	Equus_caballus
ENSAMXG00000017326	smg6	98	43.693	ENSEEUG00000003493	SMG6	69	53.125	Erinaceus_europaeus
ENSAMXG00000017326	smg6	81	69.783	ENSELUG00000005934	smg6	58	70.971	Esox_lucius
ENSAMXG00000017326	smg6	98	51.615	ENSFCAG00000028817	SMG6	69	63.471	Felis_catus
ENSAMXG00000017326	smg6	98	50.736	ENSFALG00000006538	SMG6	74	61.597	Ficedula_albicollis
ENSAMXG00000017326	smg6	99	50.174	ENSFDAG00000015106	SMG6	84	60.577	Fukomys_damarensis
ENSAMXG00000017326	smg6	88	66.047	ENSFHEG00000013282	smg6	75	66.605	Fundulus_heteroclitus
ENSAMXG00000017326	smg6	53	76.077	ENSGMOG00000019077	smg6	58	76.077	Gadus_morhua
ENSAMXG00000017326	smg6	91	53.425	ENSGALG00000003108	SMG6	71	61.524	Gallus_gallus
ENSAMXG00000017326	smg6	93	66.231	ENSGAFG00000000379	smg6	75	66.418	Gambusia_affinis
ENSAMXG00000017326	smg6	91	58.810	ENSGACG00000020521	smg6	81	66.886	Gasterosteus_aculeatus
ENSAMXG00000017326	smg6	98	49.930	ENSGAGG00000025617	SMG6	69	61.780	Gopherus_agassizii
ENSAMXG00000017326	smg6	99	50.309	ENSGGOG00000017156	SMG6	73	61.254	Gorilla_gorilla
ENSAMXG00000017326	smg6	88	67.985	ENSHBUG00000021311	smg6	77	65.978	Haplochromis_burtoni
ENSAMXG00000017326	smg6	99	50.208	ENSHGLG00000012882	SMG6	84	61.058	Heterocephalus_glaber_female
ENSAMXG00000017326	smg6	99	50.173	ENSHGLG00100017815	SMG6	84	61.058	Heterocephalus_glaber_male
ENSAMXG00000017326	smg6	78	62.254	ENSHCOG00000008761	smg6	80	67.206	Hippocampus_comes
ENSAMXG00000017326	smg6	99	59.744	ENSIPUG00000012493	smg6	88	74.672	Ictalurus_punctatus
ENSAMXG00000017326	smg6	99	50.587	ENSSTOG00000028127	SMG6	85	60.577	Ictidomys_tridecemlineatus
ENSAMXG00000017326	smg6	78	45.965	ENSJJAG00000015367	Smg6	63	57.124	Jaculus_jaculus
ENSAMXG00000017326	smg6	88	68.362	ENSKMAG00000000279	smg6	71	69.561	Kryptolebias_marmoratus
ENSAMXG00000017326	smg6	88	68.195	ENSLBEG00000002184	smg6	78	68.999	Labrus_bergylta
ENSAMXG00000017326	smg6	80	66.765	ENSLOCG00000006448	smg6	85	66.983	Lepisosteus_oculatus
ENSAMXG00000017326	smg6	99	49.653	ENSLAFG00000001261	SMG6	68	62.664	Loxodonta_africana
ENSAMXG00000017326	smg6	99	50.794	ENSMFAG00000003394	SMG6	73	61.349	Macaca_fascicularis
ENSAMXG00000017326	smg6	99	50.863	ENSMMUG00000023161	SMG6	73	61.443	Macaca_mulatta
ENSAMXG00000017326	smg6	99	48.789	ENSMNEG00000044592	SMG6	68	60.263	Macaca_nemestrina
ENSAMXG00000017326	smg6	93	62.569	ENSMLEG00000029353	SMG6	73	63.670	Mandrillus_leucophaeus
ENSAMXG00000017326	smg6	90	67.311	ENSMAMG00000020119	smg6	71	69.786	Mastacembelus_armatus
ENSAMXG00000017326	smg6	88	67.985	ENSMZEG00005024736	smg6	77	65.830	Maylandia_zebra
ENSAMXG00000017326	smg6	99	50.414	ENSMICG00000012913	SMG6	68	63.232	Microcebus_murinus
ENSAMXG00000017326	smg6	98	51.190	ENSMODG00000010622	SMG6	69	63.015	Monodelphis_domestica
ENSAMXG00000017326	smg6	89	68.007	ENSMALG00000001106	smg6	80	68.510	Monopterus_albus
ENSAMXG00000017326	smg6	99	50.173	MGP_CAROLIEiJ_G0016729	Smg6	97	66.000	Mus_caroli
ENSAMXG00000017326	smg6	99	50.554	ENSMUSG00000038290	Smg6	96	66.282	Mus_musculus
ENSAMXG00000017326	smg6	99	50.243	MGP_PahariEiJ_G0017866	Smg6	98	65.625	Mus_pahari
ENSAMXG00000017326	smg6	99	50.346	MGP_SPRETEiJ_G0017572	Smg6	96	65.994	Mus_spretus
ENSAMXG00000017326	smg6	99	50.383	ENSMPUG00000013046	SMG6	69	63.333	Mustela_putorius_furo
ENSAMXG00000017326	smg6	98	51.681	ENSMLUG00000005739	SMG6	72	62.175	Myotis_lucifugus
ENSAMXG00000017326	smg6	98	50.387	ENSNGAG00000007287	Smg6	90	58.371	Nannospalax_galili
ENSAMXG00000017326	smg6	90	68.391	ENSNBRG00000009511	smg6	78	68.857	Neolamprologus_brichardi
ENSAMXG00000017326	smg6	98	50.980	ENSNLEG00000017171	SMG6	100	62.405	Nomascus_leucogenys
ENSAMXG00000017326	smg6	91	52.608	ENSMEUG00000015804	SMG6	70	61.717	Notamacropus_eugenii
ENSAMXG00000017326	smg6	57	63.934	ENSOPRG00000000579	SMG6	81	63.077	Ochotona_princeps
ENSAMXG00000017326	smg6	99	44.213	ENSODEG00000008038	SMG6	82	53.571	Octodon_degus
ENSAMXG00000017326	smg6	88	68.173	ENSONIG00000005594	smg6	74	68.293	Oreochromis_niloticus
ENSAMXG00000017326	smg6	99	50.069	ENSOCUG00000013018	SMG6	68	63.105	Oryctolagus_cuniculus
ENSAMXG00000017326	smg6	97	65.392	ENSORLG00000003317	smg6	75	65.269	Oryzias_latipes
ENSAMXG00000017326	smg6	97	65.571	ENSORLG00020015343	smg6	66	65.571	Oryzias_latipes_hni
ENSAMXG00000017326	smg6	97	64.973	ENSORLG00015020454	smg6	76	64.850	Oryzias_latipes_hsok
ENSAMXG00000017326	smg6	88	66.729	ENSOMEG00000010838	smg6	75	66.729	Oryzias_melastigma
ENSAMXG00000017326	smg6	99	50.725	ENSOGAG00000004483	SMG6	72	62.019	Otolemur_garnettii
ENSAMXG00000017326	smg6	98	51.119	ENSOARG00000015076	SMG6	70	63.370	Ovis_aries
ENSAMXG00000017326	smg6	99	50.275	ENSPPAG00000043296	SMG6	68	63.169	Pan_paniscus
ENSAMXG00000017326	smg6	98	51.615	ENSPPRG00000014581	SMG6	69	63.471	Panthera_pardus
ENSAMXG00000017326	smg6	98	51.654	ENSPTIG00000008925	SMG6	100	62.595	Panthera_tigris_altaica
ENSAMXG00000017326	smg6	99	50.446	ENSPTRG00000008544	SMG6	100	62.405	Pan_troglodytes
ENSAMXG00000017326	smg6	99	50.656	ENSPANG00000024588	SMG6	73	61.254	Papio_anubis
ENSAMXG00000017326	smg6	90	48.137	ENSPSIG00000006660	SMG6	64	61.203	Pelodiscus_sinensis
ENSAMXG00000017326	smg6	72	68.360	ENSPMGG00000000844	smg6	74	73.773	Periophthalmus_magnuspinnatus
ENSAMXG00000017326	smg6	99	50.487	ENSPEMG00000020707	Smg6	86	60.577	Peromyscus_maniculatus_bairdii
ENSAMXG00000017326	smg6	93	66.884	ENSPFOG00000012035	smg6	74	68.637	Poecilia_formosa
ENSAMXG00000017326	smg6	93	66.604	ENSPLAG00000017660	smg6	75	66.791	Poecilia_latipinna
ENSAMXG00000017326	smg6	93	66.791	ENSPMEG00000000258	smg6	75	66.915	Poecilia_mexicana
ENSAMXG00000017326	smg6	88	66.698	ENSPREG00000010066	smg6	82	66.884	Poecilia_reticulata
ENSAMXG00000017326	smg6	99	46.909	ENSPPYG00000007790	SMG6	73	56.345	Pongo_abelii
ENSAMXG00000017326	smg6	99	48.309	ENSPCAG00000000552	SMG6	72	57.835	Procavia_capensis
ENSAMXG00000017326	smg6	99	50.415	ENSPCOG00000020925	SMG6	68	63.169	Propithecus_coquereli
ENSAMXG00000017326	smg6	81	53.978	ENSPVAG00000002159	SMG6	68	59.536	Pteropus_vampyrus
ENSAMXG00000017326	smg6	94	60.553	ENSPNYG00000024151	smg6	70	68.810	Pundamilia_nyererei
ENSAMXG00000017326	smg6	89	72.342	ENSPNAG00000015480	smg6	98	60.502	Pygocentrus_nattereri
ENSAMXG00000017326	smg6	99	50.069	ENSRNOG00000003041	Smg6	97	65.429	Rattus_norvegicus
ENSAMXG00000017326	smg6	99	50.933	ENSRBIG00000024746	SMG6	73	61.349	Rhinopithecus_bieti
ENSAMXG00000017326	smg6	99	50.864	ENSRROG00000030423	SMG6	100	62.786	Rhinopithecus_roxellana
ENSAMXG00000017326	smg6	99	50.481	ENSSBOG00000022518	SMG6	68	60.747	Saimiri_boliviensis_boliviensis
ENSAMXG00000017326	smg6	99	50.799	ENSSHAG00000010045	SMG6	68	63.269	Sarcophilus_harrisii
ENSAMXG00000017326	smg6	84	69.021	ENSSFOG00015005436	smg6	70	69.397	Scleropages_formosus
ENSAMXG00000017326	smg6	92	67.573	ENSSMAG00000019777	smg6	71	68.835	Scophthalmus_maximus
ENSAMXG00000017326	smg6	95	69.202	ENSSDUG00000016412	smg6	73	69.325	Seriola_dumerili
ENSAMXG00000017326	smg6	84	68.102	ENSSLDG00000020747	smg6	66	68.231	Seriola_lalandi_dorsalis
ENSAMXG00000017326	smg6	98	50.990	ENSSPUG00000007152	SMG6	73	60.571	Sphenodon_punctatus
ENSAMXG00000017326	smg6	94	68.885	ENSSPAG00000015633	smg6	81	70.000	Stegastes_partitus
ENSAMXG00000017326	smg6	98	50.878	ENSSSCG00000017826	SMG6	69	63.572	Sus_scrofa
ENSAMXG00000017326	smg6	72	61.822	ENSTGUG00000005836	SMG6	69	62.323	Taeniopygia_guttata
ENSAMXG00000017326	smg6	89	70.757	ENSTRUG00000000358	smg6	68	70.191	Takifugu_rubripes
ENSAMXG00000017326	smg6	99	48.340	ENSTBEG00000011424	SMG6	68	60.162	Tupaia_belangeri
ENSAMXG00000017326	smg6	89	59.259	ENSTTRG00000001175	SMG6	59	59.823	Tursiops_truncatus
ENSAMXG00000017326	smg6	99	50.938	ENSUAMG00000025152	SMG6	70	63.078	Ursus_americanus
ENSAMXG00000017326	smg6	98	51.059	ENSUMAG00000009306	SMG6	70	63.269	Ursus_maritimus
ENSAMXG00000017326	smg6	82	88.889	ENSVPAG00000000225	SMG6	55	88.889	Vicugna_pacos
ENSAMXG00000017326	smg6	98	51.714	ENSVVUG00000021727	SMG6	74	62.415	Vulpes_vulpes
ENSAMXG00000017326	smg6	69	58.485	ENSXETG00000023799	SMG6	70	58.534	Xenopus_tropicalis
ENSAMXG00000017326	smg6	82	68.182	ENSXCOG00000009867	smg6	77	68.375	Xiphophorus_couchianus
ENSAMXG00000017326	smg6	93	66.418	ENSXMAG00000010321	smg6	75	66.604	Xiphophorus_maculatus