EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017609 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 1197 bases
Position: chrAPWO02001270.1:990-2186
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	1	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	2	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	3	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	4	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	5	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	6	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	7	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	8	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	9	10
ENSAMXP00000018130	zf-C2H2	PF00096.26	3.7e-64	10	10
ENSAMXP00000018130	zf-met	PF12874.7	8.5e-21	1	5
ENSAMXP00000018130	zf-met	PF12874.7	8.5e-21	2	5
ENSAMXP00000018130	zf-met	PF12874.7	8.5e-21	3	5
ENSAMXP00000018130	zf-met	PF12874.7	8.5e-21	4	5
ENSAMXP00000018130	zf-met	PF12874.7	8.5e-21	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018130	-	1197	-	ENSAMXP00000018130	398 (aa)	-	W5LE68

Gene Model

Click here to download ENSAMXG00000017609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017609's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017609	-	77	65.979	ENSAMXG00000039770	-	90	68.182
ENSAMXG00000017609	-	77	36.245	ENSAMXG00000029059	-	65	38.144
ENSAMXG00000017609	-	81	62.847	ENSAMXG00000032237	-	95	62.847
ENSAMXG00000017609	-	83	72.928	ENSAMXG00000041721	-	78	72.928
ENSAMXG00000017609	-	73	76.056	ENSAMXG00000041725	-	88	76.056
ENSAMXG00000017609	-	74	81.597	ENSAMXG00000043251	-	95	81.597
ENSAMXG00000017609	-	77	70.391	ENSAMXG00000041650	-	93	70.391
ENSAMXG00000017609	-	85	74.502	ENSAMXG00000038156	-	97	74.502
ENSAMXG00000017609	-	83	79.930	ENSAMXG00000011804	-	92	79.930
ENSAMXG00000017609	-	72	77.941	ENSAMXG00000031646	-	94	77.941
ENSAMXG00000017609	-	80	75.593	ENSAMXG00000039432	-	99	75.593
ENSAMXG00000017609	-	76	71.103	ENSAMXG00000031489	-	93	72.297
ENSAMXG00000017609	-	75	71.660	ENSAMXG00000030530	-	97	74.597
ENSAMXG00000017609	-	77	42.857	ENSAMXG00000041864	prdm5	86	42.857
ENSAMXG00000017609	-	88	75.258	ENSAMXG00000041865	-	97	75.258
ENSAMXG00000017609	-	73	46.491	ENSAMXG00000041862	-	95	45.148
ENSAMXG00000017609	-	81	76.684	ENSAMXG00000041861	-	92	76.684
ENSAMXG00000017609	-	75	73.239	ENSAMXG00000037326	-	92	73.239
ENSAMXG00000017609	-	88	47.440	ENSAMXG00000012589	-	88	47.440
ENSAMXG00000017609	-	78	78.523	ENSAMXG00000018161	-	94	78.523
ENSAMXG00000017609	-	78	62.116	ENSAMXG00000038536	-	93	62.116
ENSAMXG00000017609	-	85	72.472	ENSAMXG00000039977	-	95	72.472
ENSAMXG00000017609	-	75	73.898	ENSAMXG00000032619	-	99	73.898
ENSAMXG00000017609	-	72	53.448	ENSAMXG00000038122	-	94	53.448
ENSAMXG00000017609	-	78	39.755	ENSAMXG00000024907	znf319b	85	38.782
ENSAMXG00000017609	-	78	61.092	ENSAMXG00000042746	-	93	61.092
ENSAMXG00000017609	-	80	75.427	ENSAMXG00000031794	-	99	75.427
ENSAMXG00000017609	-	74	80.208	ENSAMXG00000038636	-	98	80.208
ENSAMXG00000017609	-	85	70.440	ENSAMXG00000030963	-	97	70.440
ENSAMXG00000017609	-	83	68.468	ENSAMXG00000040677	-	91	68.468
ENSAMXG00000017609	-	77	39.286	ENSAMXG00000038085	scrt1a	51	39.286
ENSAMXG00000017609	-	74	61.888	ENSAMXG00000038325	-	92	61.888
ENSAMXG00000017609	-	77	72.085	ENSAMXG00000038324	-	76	72.085
ENSAMXG00000017609	-	93	72.460	ENSAMXG00000035690	-	87	72.460
ENSAMXG00000017609	-	93	66.667	ENSAMXG00000037717	-	97	66.667
ENSAMXG00000017609	-	76	41.250	ENSAMXG00000001155	si:dkey-89b17.4	82	41.250
ENSAMXG00000017609	-	82	70.358	ENSAMXG00000039004	-	91	70.358
ENSAMXG00000017609	-	74	69.417	ENSAMXG00000033013	-	81	69.417
ENSAMXG00000017609	-	77	77.320	ENSAMXG00000009558	-	93	77.320
ENSAMXG00000017609	-	89	65.306	ENSAMXG00000036915	-	97	65.306
ENSAMXG00000017609	-	90	43.158	ENSAMXG00000035246	-	83	43.158
ENSAMXG00000017609	-	76	37.288	ENSAMXG00000039622	zbtb41	52	37.288
ENSAMXG00000017609	-	78	75.000	ENSAMXG00000003002	-	92	75.000
ENSAMXG00000017609	-	75	47.458	ENSAMXG00000034934	-	79	47.458
ENSAMXG00000017609	-	84	78.644	ENSAMXG00000040212	-	95	78.644
ENSAMXG00000017609	-	85	70.779	ENSAMXG00000031496	-	95	70.779
ENSAMXG00000017609	-	74	75.618	ENSAMXG00000038453	-	82	75.618
ENSAMXG00000017609	-	83	54.419	ENSAMXG00000029660	-	58	54.419
ENSAMXG00000017609	-	81	66.887	ENSAMXG00000042593	-	100	66.887
ENSAMXG00000017609	-	87	58.675	ENSAMXG00000043541	-	90	63.485
ENSAMXG00000017609	-	82	65.116	ENSAMXG00000035875	-	99	68.826
ENSAMXG00000017609	-	77	64.744	ENSAMXG00000042167	-	94	64.744
ENSAMXG00000017609	-	91	74.434	ENSAMXG00000036567	-	89	74.434
ENSAMXG00000017609	-	75	80.405	ENSAMXG00000039162	-	98	80.405
ENSAMXG00000017609	-	84	42.857	ENSAMXG00000006669	GFI1	64	42.857
ENSAMXG00000017609	-	79	81.597	ENSAMXG00000025965	-	94	81.597
ENSAMXG00000017609	-	81	78.445	ENSAMXG00000036762	-	96	78.445
ENSAMXG00000017609	-	84	66.535	ENSAMXG00000036241	-	95	61.224
ENSAMXG00000017609	-	75	68.379	ENSAMXG00000029109	-	85	68.379
ENSAMXG00000017609	-	82	75.648	ENSAMXG00000035683	-	99	75.648
ENSAMXG00000017609	-	73	61.404	ENSAMXG00000042784	-	91	61.404
ENSAMXG00000017609	-	73	67.213	ENSAMXG00000036633	-	69	66.929
ENSAMXG00000017609	-	76	82.292	ENSAMXG00000039879	-	97	82.292
ENSAMXG00000017609	-	74	75.254	ENSAMXG00000000353	-	93	75.254
ENSAMXG00000017609	-	77	53.846	ENSAMXG00000034857	-	64	53.846
ENSAMXG00000017609	-	91	69.708	ENSAMXG00000037760	-	99	69.708
ENSAMXG00000017609	-	75	37.000	ENSAMXG00000032845	-	52	36.816
ENSAMXG00000017609	-	80	67.925	ENSAMXG00000032841	-	84	67.391
ENSAMXG00000017609	-	80	67.148	ENSAMXG00000042633	-	97	67.148
ENSAMXG00000017609	-	74	70.946	ENSAMXG00000009776	-	86	70.946
ENSAMXG00000017609	-	73	39.286	ENSAMXG00000033001	-	53	37.857
ENSAMXG00000017609	-	76	64.398	ENSAMXG00000037143	-	95	64.621
ENSAMXG00000017609	-	89	75.641	ENSAMXG00000039881	-	89	75.641
ENSAMXG00000017609	-	97	67.254	ENSAMXG00000029960	-	94	67.254
ENSAMXG00000017609	-	76	73.256	ENSAMXG00000035949	-	78	73.256
ENSAMXG00000017609	-	81	75.486	ENSAMXG00000040630	-	96	75.000
ENSAMXG00000017609	-	82	61.871	ENSAMXG00000026144	-	96	61.871
ENSAMXG00000017609	-	77	71.747	ENSAMXG00000026142	-	92	71.747
ENSAMXG00000017609	-	80	58.413	ENSAMXG00000026143	-	98	60.208
ENSAMXG00000017609	-	76	54.737	ENSAMXG00000034333	-	83	54.737
ENSAMXG00000017609	-	85	74.194	ENSAMXG00000043423	-	85	74.368
ENSAMXG00000017609	-	78	63.889	ENSAMXG00000038280	-	88	63.889
ENSAMXG00000017609	-	89	67.300	ENSAMXG00000010805	-	94	67.300
ENSAMXG00000017609	-	78	77.076	ENSAMXG00000031900	-	95	77.076
ENSAMXG00000017609	-	87	79.585	ENSAMXG00000039744	-	99	79.585
ENSAMXG00000017609	-	90	40.299	ENSAMXG00000017178	GZF1	51	40.299
ENSAMXG00000017609	-	78	65.789	ENSAMXG00000019489	-	93	65.789
ENSAMXG00000017609	-	79	72.535	ENSAMXG00000010930	-	81	72.535
ENSAMXG00000017609	-	79	48.951	ENSAMXG00000035127	-	91	49.004
ENSAMXG00000017609	-	87	72.281	ENSAMXG00000035437	-	99	72.281
ENSAMXG00000017609	-	95	52.976	ENSAMXG00000042174	-	95	61.034
ENSAMXG00000017609	-	77	51.765	ENSAMXG00000014745	-	82	51.765
ENSAMXG00000017609	-	78	80.969	ENSAMXG00000041404	-	97	80.969
ENSAMXG00000017609	-	84	52.419	ENSAMXG00000013492	-	98	52.612
ENSAMXG00000017609	-	84	36.066	ENSAMXG00000035525	znf646	83	47.561
ENSAMXG00000017609	-	74	75.694	ENSAMXG00000041128	-	87	75.694
ENSAMXG00000017609	-	84	77.860	ENSAMXG00000007092	-	98	77.860
ENSAMXG00000017609	-	83	65.888	ENSAMXG00000043019	-	95	65.888
ENSAMXG00000017609	-	74	63.889	ENSAMXG00000030659	-	75	63.889
ENSAMXG00000017609	-	66	36.889	ENSAMXG00000044034	-	68	37.423
ENSAMXG00000017609	-	77	47.674	ENSAMXG00000007441	-	58	47.674
ENSAMXG00000017609	-	77	61.053	ENSAMXG00000038284	-	94	61.053
ENSAMXG00000017609	-	74	77.477	ENSAMXG00000004610	-	96	77.477
ENSAMXG00000017609	-	73	75.000	ENSAMXG00000010078	-	86	75.000
ENSAMXG00000017609	-	84	49.500	ENSAMXG00000007973	-	99	47.907
ENSAMXG00000017609	-	75	72.894	ENSAMXG00000029828	-	97	72.894
ENSAMXG00000017609	-	73	66.522	ENSAMXG00000044107	-	89	67.647
ENSAMXG00000017609	-	93	61.905	ENSAMXG00000040806	-	94	62.963
ENSAMXG00000017609	-	81	45.217	ENSAMXG00000017199	-	51	45.217
ENSAMXG00000017609	-	86	73.835	ENSAMXG00000035145	-	94	73.835
ENSAMXG00000017609	-	83	67.752	ENSAMXG00000001626	-	96	68.259
ENSAMXG00000017609	-	85	77.778	ENSAMXG00000029518	-	70	77.778
ENSAMXG00000017609	-	87	76.689	ENSAMXG00000032457	-	95	76.689
ENSAMXG00000017609	-	80	76.471	ENSAMXG00000036233	-	83	76.712
ENSAMXG00000017609	-	76	63.732	ENSAMXG00000034402	-	94	63.732
ENSAMXG00000017609	-	79	80.623	ENSAMXG00000037885	-	98	80.623
ENSAMXG00000017609	-	73	77.928	ENSAMXG00000035920	-	90	77.928
ENSAMXG00000017609	-	75	64.220	ENSAMXG00000043178	-	71	64.220
ENSAMXG00000017609	-	75	67.596	ENSAMXG00000039752	-	93	67.596
ENSAMXG00000017609	-	80	60.504	ENSAMXG00000038905	-	96	60.504
ENSAMXG00000017609	-	96	56.787	ENSAMXG00000032212	-	95	65.052
ENSAMXG00000017609	-	77	37.255	ENSAMXG00000038507	-	77	37.255
ENSAMXG00000017609	-	82	68.990	ENSAMXG00000037923	-	99	69.231
ENSAMXG00000017609	-	74	62.389	ENSAMXG00000043302	-	72	62.389
ENSAMXG00000017609	-	80	62.329	ENSAMXG00000012604	-	96	62.329
ENSAMXG00000017609	-	84	66.552	ENSAMXG00000017959	-	98	66.552
ENSAMXG00000017609	-	73	81.272	ENSAMXG00000025455	-	99	81.272
ENSAMXG00000017609	-	81	78.467	ENSAMXG00000025452	-	99	78.467
ENSAMXG00000017609	-	79	69.024	ENSAMXG00000030742	-	98	69.024
ENSAMXG00000017609	-	89	67.254	ENSAMXG00000033201	-	94	67.254
ENSAMXG00000017609	-	85	78.521	ENSAMXG00000031501	-	97	78.521
ENSAMXG00000017609	-	85	72.297	ENSAMXG00000042275	-	99	72.297
ENSAMXG00000017609	-	84	45.833	ENSAMXG00000044096	-	79	45.833
ENSAMXG00000017609	-	81	66.667	ENSAMXG00000039700	-	97	66.667
ENSAMXG00000017609	-	74	71.377	ENSAMXG00000036849	-	81	71.377
ENSAMXG00000017609	-	82	36.888	ENSAMXG00000025761	-	88	38.141
ENSAMXG00000017609	-	75	43.357	ENSAMXG00000034873	-	80	43.357
ENSAMXG00000017609	-	79	76.415	ENSAMXG00000041609	-	99	76.415
ENSAMXG00000017609	-	90	61.751	ENSAMXG00000034096	-	92	61.751
ENSAMXG00000017609	-	83	69.444	ENSAMXG00000044110	-	92	69.444
ENSAMXG00000017609	-	73	44.000	ENSAMXG00000038235	snai2	53	44.000
ENSAMXG00000017609	-	72	53.846	ENSAMXG00000033252	-	89	53.846
ENSAMXG00000017609	-	88	62.207	ENSAMXG00000043291	-	91	62.207
ENSAMXG00000017609	-	80	64.931	ENSAMXG00000013274	-	99	64.931
ENSAMXG00000017609	-	77	85.473	ENSAMXG00000029178	-	97	85.473
ENSAMXG00000017609	-	77	71.489	ENSAMXG00000037981	-	76	71.489
ENSAMXG00000017609	-	81	74.194	ENSAMXG00000044028	-	99	74.194
ENSAMXG00000017609	-	77	65.161	ENSAMXG00000043978	-	86	64.045
ENSAMXG00000017609	-	87	76.369	ENSAMXG00000030911	-	97	76.369
ENSAMXG00000017609	-	82	75.781	ENSAMXG00000042938	-	95	75.781
ENSAMXG00000017609	-	78	80.165	ENSAMXG00000035809	-	99	80.165
ENSAMXG00000017609	-	74	41.667	ENSAMXG00000042191	zbtb47a	70	41.667
ENSAMXG00000017609	-	82	65.318	ENSAMXG00000031307	-	70	65.318
ENSAMXG00000017609	-	86	69.286	ENSAMXG00000039016	-	86	69.286
ENSAMXG00000017609	-	81	77.888	ENSAMXG00000008613	-	96	77.888
ENSAMXG00000017609	-	80	69.048	ENSAMXG00000039408	-	96	69.048
ENSAMXG00000017609	-	83	60.156	ENSAMXG00000012873	-	94	60.156
ENSAMXG00000017609	-	81	66.667	ENSAMXG00000031844	-	95	66.667
ENSAMXG00000017609	-	73	81.169	ENSAMXG00000029878	-	90	81.169
ENSAMXG00000017609	-	85	61.111	ENSAMXG00000033124	-	73	61.111
ENSAMXG00000017609	-	77	34.872	ENSAMXG00000016921	znf341	53	34.872
ENSAMXG00000017609	-	85	66.391	ENSAMXG00000039182	-	82	66.391
ENSAMXG00000017609	-	72	51.163	ENSAMXG00000037382	-	52	51.163
ENSAMXG00000017609	-	75	54.762	ENSAMXG00000035286	si:ch1073-224n8.1	98	42.162
ENSAMXG00000017609	-	74	80.565	ENSAMXG00000024978	-	96	80.565
ENSAMXG00000017609	-	67	70.811	ENSAMXG00000042774	-	90	70.811
ENSAMXG00000017609	-	74	66.667	ENSAMXG00000029161	-	80	66.667
ENSAMXG00000017609	-	80	82.373	ENSAMXG00000034958	-	96	82.373
ENSAMXG00000017609	-	73	62.385	ENSAMXG00000034344	-	73	62.385
ENSAMXG00000017609	-	82	62.551	ENSAMXG00000037709	-	94	62.551
ENSAMXG00000017609	-	73	78.903	ENSAMXG00000037703	-	86	78.903
ENSAMXG00000017609	-	76	79.422	ENSAMXG00000041975	-	85	79.422
ENSAMXG00000017609	-	73	64.192	ENSAMXG00000036257	-	88	64.192
ENSAMXG00000017609	-	83	75.172	ENSAMXG00000034847	-	90	75.172
ENSAMXG00000017609	-	77	39.130	ENSAMXG00000034158	scrt2	50	39.130
ENSAMXG00000017609	-	82	42.000	ENSAMXG00000033299	-	72	42.088
ENSAMXG00000017609	-	85	59.707	ENSAMXG00000029783	-	95	59.707
ENSAMXG00000017609	-	73	76.042	ENSAMXG00000033500	-	92	77.397
ENSAMXG00000017609	-	83	61.240	ENSAMXG00000009563	-	98	65.636
ENSAMXG00000017609	-	85	77.778	ENSAMXG00000031009	-	92	77.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017609	-	82	55.696	ENSACLG00000020975	-	90	55.696	Astatotilapia_calliptera
ENSAMXG00000017609	-	84	50.883	ENSEBUG00000005258	-	93	50.883	Eptatretus_burgeri
ENSAMXG00000017609	-	85	59.206	ENSEBUG00000010952	-	78	58.803	Eptatretus_burgeri
ENSAMXG00000017609	-	97	52.366	ENSEBUG00000009208	-	72	55.517	Eptatretus_burgeri
ENSAMXG00000017609	-	73	60.573	ENSGAGG00000001387	-	59	60.573	Gopherus_agassizii
ENSAMXG00000017609	-	77	61.149	ENSPCIG00000018955	-	75	61.149	Phascolarctos_cinereus
ENSAMXG00000017609	-	79	62.278	ENSSHAG00000014216	-	79	62.278	Sarcophilus_harrisii
ENSAMXG00000017609	-	83	59.565	ENSTGUG00000014292	-	99	59.565	Taeniopygia_guttata
ENSAMXG00000017609	-	73	60.963	ENSTGUG00000018385	-	100	60.963	Taeniopygia_guttata
ENSAMXG00000017609	-	75	54.667	ENSTGUG00000016220	-	100	54.667	Taeniopygia_guttata
ENSAMXG00000017609	-	73	56.318	ENSUMAG00000019336	-	99	56.318	Ursus_maritimus