EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017716 (Gene tree)
Gene ID: 103023604
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 22282 bases
Position: chr11:11053372-11075653
Accession: 103023604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018309	tRNA-synt_1g	PF09334.11	8.5e-13	1	1
ENSAMXP00000018309	Anticodon_1	PF08264.13	3.3e-36	1	1
ENSAMXP00000018309	tRNA-synt_1	PF00133.22	7.9e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018309	-	3612	XM_022674050	ENSAMXP00000018309	1203 (aa)	XP_022529771	W5LEP7

Gene Model

Click here to download ENSAMXG00000017716's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017716	vars	80	51.626	ENSAMXG00000017773	vars2	95	51.524

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017716	vars	95	65.721	ENSG00000204394	VARS	99	72.393	Homo_sapiens
ENSAMXG00000017716	vars	96	82.237	ENSAPOG00000020921	vars	96	82.152	Acanthochromis_polyacanthus
ENSAMXG00000017716	vars	96	82.237	ENSAPOG00000020691	vars	96	82.152	Acanthochromis_polyacanthus
ENSAMXG00000017716	vars	95	66.333	ENSAMEG00000006417	VARS	94	66.333	Ailuropoda_melanoleuca
ENSAMXG00000017716	vars	96	81.818	ENSACIG00000013752	vars	96	81.750	Amphilophus_citrinellus
ENSAMXG00000017716	vars	96	82.925	ENSAOCG00000002447	vars	96	82.840	Amphiprion_ocellaris
ENSAMXG00000017716	vars	96	80.913	ENSAPEG00000010638	vars	95	80.508	Amphiprion_percula
ENSAMXG00000017716	vars	96	81.192	ENSATEG00000020219	vars	96	81.948	Anabas_testudineus
ENSAMXG00000017716	vars	90	68.348	ENSACAG00000029133	-	99	69.599	Anolis_carolinensis
ENSAMXG00000017716	vars	95	65.721	ENSANAG00000015453	VARS	94	65.721	Aotus_nancymaae
ENSAMXG00000017716	vars	96	80.245	ENSACLG00000025699	vars	93	80.245	Astatotilapia_calliptera
ENSAMXG00000017716	vars	95	66.722	ENSBTAG00000005631	VARS	94	66.722	Bos_taurus
ENSAMXG00000017716	vars	95	65.471	ENSCJAG00000002604	VARS	94	65.471	Callithrix_jacchus
ENSAMXG00000017716	vars	95	66.138	ENSCAFG00000000636	VARS	94	66.138	Canis_familiaris
ENSAMXG00000017716	vars	94	66.163	ENSCAFG00020020790	VARS	96	66.163	Canis_lupus_dingo
ENSAMXG00000017716	vars	95	66.639	ENSCHIG00000011008	VARS	94	66.639	Capra_hircus
ENSAMXG00000017716	vars	95	66.055	ENSTSYG00000001567	VARS	94	66.055	Carlito_syrichta
ENSAMXG00000017716	vars	86	69.691	ENSCAPG00000013736	VARS	92	69.504	Cavia_aperea
ENSAMXG00000017716	vars	95	65.888	ENSCPOG00000000870	VARS	94	65.721	Cavia_porcellus
ENSAMXG00000017716	vars	95	65.638	ENSCCAG00000035656	VARS	94	65.638	Cebus_capucinus
ENSAMXG00000017716	vars	95	66.305	ENSCATG00000022394	VARS	94	66.305	Cercocebus_atys
ENSAMXG00000017716	vars	89	64.905	ENSCLAG00000009470	VARS	93	64.905	Chinchilla_lanigera
ENSAMXG00000017716	vars	95	66.055	ENSCSAG00000008784	VARS	94	66.055	Chlorocebus_sabaeus
ENSAMXG00000017716	vars	75	76.600	ENSCPBG00000007943	VARS	89	76.542	Chrysemys_picta_bellii
ENSAMXG00000017716	vars	95	66.138	ENSCANG00000033570	VARS	94	66.138	Colobus_angolensis_palliatus
ENSAMXG00000017716	vars	95	66.222	ENSCGRG00001005686	Vars	94	66.222	Cricetulus_griseus_chok1gshd
ENSAMXG00000017716	vars	87	64.330	ENSCGRG00000013352	Vars	73	64.330	Cricetulus_griseus_crigri
ENSAMXG00000017716	vars	96	79.275	ENSCSEG00000019652	vars	96	79.275	Cynoglossus_semilaevis
ENSAMXG00000017716	vars	96	80.082	ENSCVAG00000022398	vars	96	80.163	Cyprinodon_variegatus
ENSAMXG00000017716	vars	96	83.828	ENSDARG00000044575	vars	95	83.746	Danio_rerio
ENSAMXG00000017716	vars	79	72.812	ENSDORG00000016433	Vars	86	72.915	Dipodomys_ordii
ENSAMXG00000017716	vars	60	75.182	ENSETEG00000003824	VARS	66	75.182	Echinops_telfairi
ENSAMXG00000017716	vars	56	68.263	ENSEBUG00000004637	vars	92	68.263	Eptatretus_burgeri
ENSAMXG00000017716	vars	95	66.472	ENSEASG00005015673	VARS	94	66.472	Equus_asinus_asinus
ENSAMXG00000017716	vars	95	66.583	ENSECAG00000014620	VARS	94	66.583	Equus_caballus
ENSAMXG00000017716	vars	66	71.930	ENSEEUG00000004116	VARS	67	71.930	Erinaceus_europaeus
ENSAMXG00000017716	vars	95	80.862	ENSELUG00000006550	vars	92	80.862	Esox_lucius
ENSAMXG00000017716	vars	95	66.555	ENSFCAG00000004510	VARS	94	66.555	Felis_catus
ENSAMXG00000017716	vars	78	70.010	ENSFDAG00000011401	VARS	95	70.010	Fukomys_damarensis
ENSAMXG00000017716	vars	96	81.086	ENSFHEG00000010672	vars	96	81.017	Fundulus_heteroclitus
ENSAMXG00000017716	vars	96	76.967	ENSGMOG00000014908	vars	95	76.967	Gadus_morhua
ENSAMXG00000017716	vars	96	80.131	ENSGAFG00000021630	vars	96	80.131	Gambusia_affinis
ENSAMXG00000017716	vars	96	76.986	ENSGACG00000009601	vars	96	77.641	Gasterosteus_aculeatus
ENSAMXG00000017716	vars	95	65.972	ENSGGOG00000011364	VARS	94	65.972	Gorilla_gorilla
ENSAMXG00000017716	vars	96	80.245	ENSHBUG00000017151	vars	93	80.245	Haplochromis_burtoni
ENSAMXG00000017716	vars	95	65.860	ENSHGLG00000011646	VARS	94	65.860	Heterocephalus_glaber_female
ENSAMXG00000017716	vars	88	64.139	ENSHGLG00100018062	VARS	93	63.961	Heterocephalus_glaber_male
ENSAMXG00000017716	vars	95	79.412	ENSHCOG00000012198	vars	94	79.498	Hippocampus_comes
ENSAMXG00000017716	vars	96	86.968	ENSIPUG00000005218	vars	95	86.968	Ictalurus_punctatus
ENSAMXG00000017716	vars	95	66.333	ENSSTOG00000013112	VARS	94	66.333	Ictidomys_tridecemlineatus
ENSAMXG00000017716	vars	95	53.547	ENSJJAG00000015343	-	95	53.463	Jaculus_jaculus
ENSAMXG00000017716	vars	95	64.921	ENSJJAG00000019749	-	94	65.246	Jaculus_jaculus
ENSAMXG00000017716	vars	96	79.883	ENSKMAG00000009455	vars	96	79.900	Kryptolebias_marmoratus
ENSAMXG00000017716	vars	95	86.186	ENSLBEG00000010341	vars	94	82.773	Labrus_bergylta
ENSAMXG00000017716	vars	95	63.696	ENSLACG00000015232	VARS	99	65.004	Latimeria_chalumnae
ENSAMXG00000017716	vars	95	73.975	ENSLOCG00000004240	vars	94	73.975	Lepisosteus_oculatus
ENSAMXG00000017716	vars	95	65.526	ENSLAFG00000023090	VARS	94	65.526	Loxodonta_africana
ENSAMXG00000017716	vars	95	66.138	ENSMFAG00000001032	VARS	94	66.138	Macaca_fascicularis
ENSAMXG00000017716	vars	95	66.138	ENSMMUG00000006828	VARS	94	66.138	Macaca_mulatta
ENSAMXG00000017716	vars	95	66.138	ENSMNEG00000042072	VARS	94	66.138	Macaca_nemestrina
ENSAMXG00000017716	vars	95	66.222	ENSMLEG00000039307	VARS	94	66.222	Mandrillus_leucophaeus
ENSAMXG00000017716	vars	96	82.010	ENSMAMG00000003949	vars	96	81.926	Mastacembelus_armatus
ENSAMXG00000017716	vars	96	81.563	ENSMZEG00005018327	vars	96	80.815	Maylandia_zebra
ENSAMXG00000017716	vars	95	66.305	ENSMAUG00000006715	Vars	94	66.305	Mesocricetus_auratus
ENSAMXG00000017716	vars	95	65.888	ENSMICG00000003548	VARS	94	65.888	Microcebus_murinus
ENSAMXG00000017716	vars	95	65.436	ENSMOCG00000015404	Vars	94	65.688	Microtus_ochrogaster
ENSAMXG00000017716	vars	95	82.605	ENSMMOG00000015801	vars	94	81.919	Mola_mola
ENSAMXG00000017716	vars	95	65.831	ENSMODG00000015204	-	94	66.305	Monodelphis_domestica
ENSAMXG00000017716	vars	96	81.255	ENSMALG00000022532	vars	96	81.172	Monopterus_albus
ENSAMXG00000017716	vars	95	66.694	MGP_CAROLIEiJ_G0021491	Vars	94	66.778	Mus_caroli
ENSAMXG00000017716	vars	95	66.611	ENSMUSG00000007029	Vars	94	66.611	Mus_musculus
ENSAMXG00000017716	vars	95	66.611	MGP_PahariEiJ_G0020486	Vars	94	66.611	Mus_pahari
ENSAMXG00000017716	vars	95	66.694	MGP_SPRETEiJ_G0022396	Vars	94	66.694	Mus_spretus
ENSAMXG00000017716	vars	95	66.138	ENSMPUG00000010821	VARS	94	66.138	Mustela_putorius_furo
ENSAMXG00000017716	vars	77	66.869	ENSMLUG00000013126	VARS	100	67.273	Myotis_lucifugus
ENSAMXG00000017716	vars	95	66.277	ENSNGAG00000012151	Vars	94	66.639	Nannospalax_galili
ENSAMXG00000017716	vars	96	82.797	ENSNBRG00000020520	vars	96	82.797	Neolamprologus_brichardi
ENSAMXG00000017716	vars	95	65.638	ENSNLEG00000006351	VARS	94	65.638	Nomascus_leucogenys
ENSAMXG00000017716	vars	91	74.972	ENSMEUG00000011378	VARS	88	74.972	Notamacropus_eugenii
ENSAMXG00000017716	vars	95	66.305	ENSOPRG00000003607	VARS	94	66.305	Ochotona_princeps
ENSAMXG00000017716	vars	95	65.717	ENSODEG00000017681	VARS	94	65.858	Octodon_degus
ENSAMXG00000017716	vars	96	80.921	ENSONIG00000013064	vars	95	82.224	Oreochromis_niloticus
ENSAMXG00000017716	vars	77	65.865	ENSOANG00000005400	VARS	98	65.742	Ornithorhynchus_anatinus
ENSAMXG00000017716	vars	95	65.159	ENSOCUG00000022463	VARS	94	64.975	Oryctolagus_cuniculus
ENSAMXG00000017716	vars	96	78.994	ENSORLG00000013063	vars	96	78.994	Oryzias_latipes
ENSAMXG00000017716	vars	96	79.462	ENSORLG00020003504	vars	96	79.397	Oryzias_latipes_hni
ENSAMXG00000017716	vars	96	79.690	ENSORLG00015009001	vars	96	79.625	Oryzias_latipes_hsok
ENSAMXG00000017716	vars	96	79.527	ENSOMEG00000015016	vars	96	79.462	Oryzias_melastigma
ENSAMXG00000017716	vars	95	65.138	ENSOGAG00000007515	VARS	94	65.138	Otolemur_garnettii
ENSAMXG00000017716	vars	95	65.805	ENSPPAG00000034012	VARS	94	65.805	Pan_paniscus
ENSAMXG00000017716	vars	95	66.722	ENSPPRG00000014855	VARS	94	66.722	Panthera_pardus
ENSAMXG00000017716	vars	85	69.683	ENSPTIG00000010462	VARS	95	68.824	Panthera_tigris_altaica
ENSAMXG00000017716	vars	95	65.805	ENSPTRG00000017985	VARS	94	65.805	Pan_troglodytes
ENSAMXG00000017716	vars	95	64.921	ENSPANG00000014565	VARS	94	64.838	Papio_anubis
ENSAMXG00000017716	vars	95	79.795	ENSPKIG00000016304	vars	94	79.795	Paramormyrops_kingsleyae
ENSAMXG00000017716	vars	96	82.532	ENSPMGG00000023909	vars	96	82.532	Periophthalmus_magnuspinnatus
ENSAMXG00000017716	vars	95	66.389	ENSPEMG00000006639	Vars	94	66.389	Peromyscus_maniculatus_bairdii
ENSAMXG00000017716	vars	95	64.559	ENSPCIG00000018553	VARS	94	65.221	Phascolarctos_cinereus
ENSAMXG00000017716	vars	96	79.640	ENSPFOG00000015690	vars	96	79.640	Poecilia_formosa
ENSAMXG00000017716	vars	96	80.384	ENSPLAG00000009590	vars	96	80.384	Poecilia_latipinna
ENSAMXG00000017716	vars	96	79.640	ENSPMEG00000004708	vars	96	79.640	Poecilia_mexicana
ENSAMXG00000017716	vars	96	81.009	ENSPREG00000013264	vars	96	80.924	Poecilia_reticulata
ENSAMXG00000017716	vars	95	64.137	ENSPPYG00000016460	VARS	94	64.137	Pongo_abelii
ENSAMXG00000017716	vars	80	71.633	ENSPCAG00000013565	VARS	80	71.633	Procavia_capensis
ENSAMXG00000017716	vars	95	66.000	ENSPCOG00000010942	VARS	94	66.000	Propithecus_coquereli
ENSAMXG00000017716	vars	95	63.636	ENSPVAG00000012403	VARS	94	63.803	Pteropus_vampyrus
ENSAMXG00000017716	vars	96	80.327	ENSPNYG00000022511	vars	96	80.327	Pundamilia_nyererei
ENSAMXG00000017716	vars	95	89.185	ENSPNAG00000020962	vars	94	89.185	Pygocentrus_nattereri
ENSAMXG00000017716	vars	95	66.222	ENSRNOG00000000867	Vars	94	66.305	Rattus_norvegicus
ENSAMXG00000017716	vars	95	66.138	ENSRBIG00000041669	VARS	94	66.138	Rhinopithecus_bieti
ENSAMXG00000017716	vars	95	66.138	ENSRROG00000045490	VARS	94	66.138	Rhinopithecus_roxellana
ENSAMXG00000017716	vars	95	65.721	ENSSBOG00000035402	VARS	94	65.721	Saimiri_boliviensis_boliviensis
ENSAMXG00000017716	vars	86	69.972	ENSSHAG00000006937	VARS	94	65.008	Sarcophilus_harrisii
ENSAMXG00000017716	vars	95	80.191	ENSSFOG00015014272	vars	94	80.191	Scleropages_formosus
ENSAMXG00000017716	vars	96	79.038	ENSSMAG00000009596	vars	96	79.038	Scophthalmus_maximus
ENSAMXG00000017716	vars	96	80.914	ENSSDUG00000014177	vars	96	80.995	Seriola_dumerili
ENSAMXG00000017716	vars	96	80.995	ENSSLDG00000025316	vars	96	81.077	Seriola_lalandi_dorsalis
ENSAMXG00000017716	vars	96	81.444	ENSSPAG00000017068	vars	96	81.429	Stegastes_partitus
ENSAMXG00000017716	vars	95	66.250	ENSSSCG00000038950	VARS	94	66.250	Sus_scrofa
ENSAMXG00000017716	vars	81	78.600	ENSTRUG00000012307	vars	97	78.487	Takifugu_rubripes
ENSAMXG00000017716	vars	96	79.967	ENSTNIG00000008011	vars	95	80.050	Tetraodon_nigroviridis
ENSAMXG00000017716	vars	95	60.801	ENSTTRG00000014128	VARS	94	60.801	Tursiops_truncatus
ENSAMXG00000017716	vars	95	64.398	ENSUAMG00000010424	VARS	94	64.398	Ursus_americanus
ENSAMXG00000017716	vars	95	60.463	ENSUMAG00000013486	VARS	93	62.738	Ursus_maritimus
ENSAMXG00000017716	vars	95	66.751	ENSVVUG00000021323	VARS	94	66.667	Vulpes_vulpes
ENSAMXG00000017716	vars	95	63.803	ENSXETG00000024076	vars	94	63.796	Xenopus_tropicalis
ENSAMXG00000017716	vars	96	80.350	ENSXCOG00000019172	vars	96	80.350	Xiphophorus_couchianus
ENSAMXG00000017716	vars	96	79.967	ENSXMAG00000010927	vars	96	79.967	Xiphophorus_maculatus