EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017773 (Gene tree)
Gene ID: 103044052
Gene Symbol: vars2
Alias: si:ch211-152p11.2
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 33914 bases
Position: chr23:16286239-16320152
Accession: 103044052
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000043001	tRNA-synt_1g	PF09334.11	4.7e-15	1	1
ENSAMXP00000018358	tRNA-synt_1g	PF09334.11	5.9e-15	1	1
ENSAMXP00000043001	Anticodon_1	PF08264.13	1.6e-37	1	1
ENSAMXP00000018358	Anticodon_1	PF08264.13	1.7e-37	1	1
ENSAMXP00000043001	tRNA-synt_1	PF00133.22	3.6e-197	1	1
ENSAMXP00000018358	tRNA-synt_1	PF00133.22	4.2e-197	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018358	-	4547	XM_022683113	ENSAMXP00000018358	1088 (aa)	XP_022538834	W5LEU6
ENSAMXT00000040701	-	6068	-	ENSAMXP00000043001	1023 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000017773's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017773	vars2	95	51.524	ENSAMXG00000017716	vars	80	51.626

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017773	vars2	94	73.738	ENSAPOG00000007396	vars2	96	71.319	Acanthochromis_polyacanthus
ENSAMXG00000017773	vars2	95	52.576	ENSAMEG00000012997	VARS2	92	52.576	Ailuropoda_melanoleuca
ENSAMXG00000017773	vars2	97	71.689	ENSACIG00000004344	vars2	97	70.878	Amphilophus_citrinellus
ENSAMXG00000017773	vars2	94	74.124	ENSAOCG00000000476	vars2	96	71.675	Amphiprion_ocellaris
ENSAMXG00000017773	vars2	94	74.021	ENSAPEG00000008646	vars2	94	71.675	Amphiprion_percula
ENSAMXG00000017773	vars2	94	76.112	ENSATEG00000012291	vars2	96	73.821	Anabas_testudineus
ENSAMXG00000017773	vars2	95	54.441	ENSACAG00000022093	VARS2	95	54.441	Anolis_carolinensis
ENSAMXG00000017773	vars2	96	53.654	ENSANAG00000038018	VARS2	97	51.789	Aotus_nancymaae
ENSAMXG00000017773	vars2	96	72.105	ENSACLG00000018673	vars2	97	71.073	Astatotilapia_calliptera
ENSAMXG00000017773	vars2	98	52.182	ENSBTAG00000010698	VARS2	95	52.567	Bos_taurus
ENSAMXG00000017773	vars2	98	51.445	ENSCJAG00000019826	VARS2	97	51.981	Callithrix_jacchus
ENSAMXG00000017773	vars2	96	55.255	ENSCAFG00000000454	VARS2	97	53.102	Canis_familiaris
ENSAMXG00000017773	vars2	88	58.306	ENSCAFG00020019387	VARS2	92	58.624	Canis_lupus_dingo
ENSAMXG00000017773	vars2	98	51.673	ENSCHIG00000007847	VARS2	95	52.385	Capra_hircus
ENSAMXG00000017773	vars2	95	55.030	ENSTSYG00000009904	VARS2	96	52.765	Carlito_syrichta
ENSAMXG00000017773	vars2	88	53.661	ENSCAPG00000017770	VARS2	99	53.661	Cavia_aperea
ENSAMXG00000017773	vars2	96	52.264	ENSCPOG00000021834	VARS2	95	52.431	Cavia_porcellus
ENSAMXG00000017773	vars2	96	51.921	ENSCCAG00000037907	VARS2	97	52.264	Cebus_capucinus
ENSAMXG00000017773	vars2	93	55.233	ENSCATG00000032554	VARS2	95	52.647	Cercocebus_atys
ENSAMXG00000017773	vars2	96	53.854	ENSCLAG00000002889	VARS2	95	52.290	Chinchilla_lanigera
ENSAMXG00000017773	vars2	93	55.648	ENSCSAG00000008327	VARS2	92	54.175	Chlorocebus_sabaeus
ENSAMXG00000017773	vars2	92	58.342	ENSCPBG00000021502	VARS2	96	56.623	Chrysemys_picta_bellii
ENSAMXG00000017773	vars2	93	54.922	ENSCANG00000014991	VARS2	94	52.354	Colobus_angolensis_palliatus
ENSAMXG00000017773	vars2	96	53.970	ENSCGRG00001021535	Vars2	96	52.327	Cricetulus_griseus_chok1gshd
ENSAMXG00000017773	vars2	96	53.970	ENSCGRG00000014112	Vars2	96	52.327	Cricetulus_griseus_crigri
ENSAMXG00000017773	vars2	99	62.810	ENSCSEG00000015432	vars2	91	85.235	Cynoglossus_semilaevis
ENSAMXG00000017773	vars2	70	71.688	ENSCVAG00000017765	vars2	99	71.688	Cyprinodon_variegatus
ENSAMXG00000017773	vars2	97	75.678	ENSDARG00000056717	vars2	97	75.673	Danio_rerio
ENSAMXG00000017773	vars2	79	51.270	ENSDORG00000008516	Vars2	94	50.682	Dipodomys_ordii
ENSAMXG00000017773	vars2	95	48.053	ENSETEG00000014844	VARS2	95	46.139	Echinops_telfairi
ENSAMXG00000017773	vars2	97	53.938	ENSEASG00005019997	VARS2	95	56.975	Equus_asinus_asinus
ENSAMXG00000017773	vars2	97	54.337	ENSECAG00000018202	VARS2	96	53.092	Equus_caballus
ENSAMXG00000017773	vars2	63	57.282	ENSEEUG00000012591	-	62	57.282	Erinaceus_europaeus
ENSAMXG00000017773	vars2	99	74.634	ENSELUG00000017824	vars2	99	72.884	Esox_lucius
ENSAMXG00000017773	vars2	97	54.636	ENSFCAG00000010531	VARS2	95	53.053	Felis_catus
ENSAMXG00000017773	vars2	97	53.838	ENSFDAG00000017216	VARS2	95	52.376	Fukomys_damarensis
ENSAMXG00000017773	vars2	96	67.644	ENSFHEG00000013932	vars2	95	68.172	Fundulus_heteroclitus
ENSAMXG00000017773	vars2	91	70.394	ENSGMOG00000018960	vars2	99	69.388	Gadus_morhua
ENSAMXG00000017773	vars2	84	70.649	ENSGAFG00000004737	vars2	95	67.672	Gambusia_affinis
ENSAMXG00000017773	vars2	91	73.825	ENSGACG00000001464	vars2	99	71.188	Gasterosteus_aculeatus
ENSAMXG00000017773	vars2	91	58.654	ENSGAGG00000011652	VARS2	99	56.231	Gopherus_agassizii
ENSAMXG00000017773	vars2	97	51.498	ENSGGOG00000014587	VARS2	95	51.996	Gorilla_gorilla
ENSAMXG00000017773	vars2	97	69.031	ENSHBUG00000002448	vars2	97	68.816	Haplochromis_burtoni
ENSAMXG00000017773	vars2	98	54.105	ENSHGLG00000012886	VARS2	92	52.567	Heterocephalus_glaber_female
ENSAMXG00000017773	vars2	98	54.006	ENSHGLG00100016535	VARS2	95	52.471	Heterocephalus_glaber_male
ENSAMXG00000017773	vars2	67	72.182	ENSHCOG00000017907	vars2	97	69.074	Hippocampus_comes
ENSAMXG00000017773	vars2	99	82.196	ENSIPUG00000015573	Vars2	100	81.509	Ictalurus_punctatus
ENSAMXG00000017773	vars2	97	53.984	ENSSTOG00000009924	VARS2	95	52.536	Ictidomys_tridecemlineatus
ENSAMXG00000017773	vars2	94	54.415	ENSJJAG00000011144	Vars2	93	52.860	Jaculus_jaculus
ENSAMXG00000017773	vars2	95	70.517	ENSKMAG00000001393	vars2	96	69.187	Kryptolebias_marmoratus
ENSAMXG00000017773	vars2	54	81.273	ENSLBEG00000005480	-	81	80.909	Labrus_bergylta
ENSAMXG00000017773	vars2	99	69.450	ENSLBEG00000011949	vars2	99	68.085	Labrus_bergylta
ENSAMXG00000017773	vars2	95	54.702	ENSLACG00000001576	-	98	53.308	Latimeria_chalumnae
ENSAMXG00000017773	vars2	98	51.301	ENSLAFG00000015183	VARS2	95	51.901	Loxodonta_africana
ENSAMXG00000017773	vars2	96	52.026	ENSMFAG00000042367	VARS2	95	52.591	Macaca_fascicularis
ENSAMXG00000017773	vars2	96	52.121	ENSMMUG00000018609	VARS2	95	52.687	Macaca_mulatta
ENSAMXG00000017773	vars2	97	53.946	ENSMNEG00000043163	VARS2	95	52.687	Macaca_nemestrina
ENSAMXG00000017773	vars2	93	55.337	ENSMLEG00000041728	VARS2	92	52.743	Mandrillus_leucophaeus
ENSAMXG00000017773	vars2	95	71.138	ENSMAMG00000020339	vars2	96	69.885	Mastacembelus_armatus
ENSAMXG00000017773	vars2	96	72.004	ENSMZEG00005017669	vars2	97	70.977	Maylandia_zebra
ENSAMXG00000017773	vars2	94	54.256	ENSMAUG00000018946	Vars2	96	52.145	Mesocricetus_auratus
ENSAMXG00000017773	vars2	86	57.399	ENSMICG00000005365	VARS2	97	57.955	Microcebus_murinus
ENSAMXG00000017773	vars2	88	59.442	ENSMOCG00000014607	Vars2	96	59.442	Microtus_ochrogaster
ENSAMXG00000017773	vars2	94	72.066	ENSMMOG00000012122	vars2	96	69.894	Mola_mola
ENSAMXG00000017773	vars2	94	53.799	ENSMODG00000015848	VARS2	97	50.975	Monodelphis_domestica
ENSAMXG00000017773	vars2	92	73.561	ENSMALG00000009217	vars2	99	71.245	Monopterus_albus
ENSAMXG00000017773	vars2	98	51.948	MGP_CAROLIEiJ_G0021529	Vars2	93	58.123	Mus_caroli
ENSAMXG00000017773	vars2	98	51.670	ENSMUSG00000038838	Vars2	93	58.123	Mus_musculus
ENSAMXG00000017773	vars2	98	51.903	MGP_PahariEiJ_G0020523	Vars2	96	56.894	Mus_pahari
ENSAMXG00000017773	vars2	98	51.763	MGP_SPRETEiJ_G0022436	Vars2	93	57.942	Mus_spretus
ENSAMXG00000017773	vars2	91	56.990	ENSMPUG00000011643	VARS2	92	54.437	Mustela_putorius_furo
ENSAMXG00000017773	vars2	97	53.294	ENSMLUG00000002356	VARS2	89	53.885	Myotis_lucifugus
ENSAMXG00000017773	vars2	95	50.153	ENSNGAG00000020607	Vars2	95	48.375	Nannospalax_galili
ENSAMXG00000017773	vars2	67	65.374	ENSNBRG00000001624	vars2	57	65.374	Neolamprologus_brichardi
ENSAMXG00000017773	vars2	93	53.472	ENSNLEG00000005625	VARS2	91	52.020	Nomascus_leucogenys
ENSAMXG00000017773	vars2	79	57.143	ENSMEUG00000014475	VARS2	89	57.475	Notamacropus_eugenii
ENSAMXG00000017773	vars2	86	53.500	ENSOPRG00000000682	VARS2	85	54.255	Ochotona_princeps
ENSAMXG00000017773	vars2	96	53.434	ENSODEG00000017965	VARS2	94	52.335	Octodon_degus
ENSAMXG00000017773	vars2	93	52.153	ENSONIG00000004734	vars2	100	52.153	Oreochromis_niloticus
ENSAMXG00000017773	vars2	69	46.164	ENSOANG00000000398	-	89	46.693	Ornithorhynchus_anatinus
ENSAMXG00000017773	vars2	97	48.231	ENSOCUG00000021496	VARS2	62	48.327	Oryctolagus_cuniculus
ENSAMXG00000017773	vars2	92	70.276	ENSORLG00000010632	vars2	96	67.081	Oryzias_latipes
ENSAMXG00000017773	vars2	92	70.594	ENSORLG00020018584	vars2	95	67.466	Oryzias_latipes_hni
ENSAMXG00000017773	vars2	92	70.382	ENSORLG00015010408	vars2	96	67.049	Oryzias_latipes_hsok
ENSAMXG00000017773	vars2	94	68.930	ENSOMEG00000008360	vars2	95	67.051	Oryzias_melastigma
ENSAMXG00000017773	vars2	97	53.579	ENSOGAG00000006087	VARS2	94	51.828	Otolemur_garnettii
ENSAMXG00000017773	vars2	98	51.346	ENSOARG00000010844	VARS2	94	51.954	Ovis_aries
ENSAMXG00000017773	vars2	98	51.634	ENSPPAG00000041141	VARS2	95	51.996	Pan_paniscus
ENSAMXG00000017773	vars2	97	54.536	ENSPPRG00000006751	VARS2	92	53.333	Panthera_pardus
ENSAMXG00000017773	vars2	97	54.437	ENSPTIG00000017799	VARS2	95	54.246	Panthera_tigris_altaica
ENSAMXG00000017773	vars2	98	51.634	ENSPTRG00000034497	VARS2	95	51.996	Pan_troglodytes
ENSAMXG00000017773	vars2	93	55.233	ENSPANG00000018481	VARS2	95	53.777	Papio_anubis
ENSAMXG00000017773	vars2	99	70.370	ENSPKIG00000011372	vars2	99	69.513	Paramormyrops_kingsleyae
ENSAMXG00000017773	vars2	62	64.623	ENSPSIG00000006206	VARS2	92	64.253	Pelodiscus_sinensis
ENSAMXG00000017773	vars2	98	69.544	ENSPMGG00000000465	vars2	97	69.164	Periophthalmus_magnuspinnatus
ENSAMXG00000017773	vars2	97	53.579	ENSPEMG00000014691	Vars2	96	52.178	Peromyscus_maniculatus_bairdii
ENSAMXG00000017773	vars2	96	54.317	ENSPCIG00000015040	VARS2	95	52.987	Phascolarctos_cinereus
ENSAMXG00000017773	vars2	96	68.934	ENSPFOG00000017616	vars2	95	68.015	Poecilia_formosa
ENSAMXG00000017773	vars2	93	70.514	ENSPLAG00000019778	vars2	96	67.885	Poecilia_latipinna
ENSAMXG00000017773	vars2	93	70.304	ENSPMEG00000011123	vars2	96	67.692	Poecilia_mexicana
ENSAMXG00000017773	vars2	93	63.285	ENSPREG00000014998	vars2	95	62.055	Poecilia_reticulata
ENSAMXG00000017773	vars2	93	54.922	ENSPPYG00000016424	VARS2	95	52.450	Pongo_abelii
ENSAMXG00000017773	vars2	66	55.907	ENSPCAG00000006946	VARS2	79	55.907	Procavia_capensis
ENSAMXG00000017773	vars2	98	50.741	ENSPCOG00000014839	VARS2	94	51.124	Propithecus_coquereli
ENSAMXG00000017773	vars2	98	50.694	ENSPVAG00000004197	VARS2	96	51.277	Pteropus_vampyrus
ENSAMXG00000017773	vars2	86	77.358	ENSPNYG00000010314	vars2	99	77.358	Pundamilia_nyererei
ENSAMXG00000017773	vars2	99	87.278	ENSPNAG00000026793	vars2	99	86.648	Pygocentrus_nattereri
ENSAMXG00000017773	vars2	97	53.586	ENSRNOG00000000833	Vars2	95	52.395	Rattus_norvegicus
ENSAMXG00000017773	vars2	93	54.762	ENSRBIG00000032725	VARS2	95	52.207	Rhinopithecus_bieti
ENSAMXG00000017773	vars2	93	54.819	ENSRROG00000043847	VARS2	95	52.257	Rhinopithecus_roxellana
ENSAMXG00000017773	vars2	92	53.925	ENSSBOG00000033240	VARS2	94	50.832	Saimiri_boliviensis_boliviensis
ENSAMXG00000017773	vars2	98	51.158	ENSSHAG00000009307	VARS2	96	51.951	Sarcophilus_harrisii
ENSAMXG00000017773	vars2	99	71.288	ENSSFOG00015016187	vars2	99	69.478	Scleropages_formosus
ENSAMXG00000017773	vars2	99	72.293	ENSSMAG00000020842	vars2	99	70.748	Scophthalmus_maximus
ENSAMXG00000017773	vars2	94	74.306	ENSSDUG00000011598	vars2	96	72.222	Seriola_dumerili
ENSAMXG00000017773	vars2	90	74.783	ENSSLDG00000015492	vars2	95	70.946	Seriola_lalandi_dorsalis
ENSAMXG00000017773	vars2	53	60.000	ENSSARG00000003786	-	61	60.000	Sorex_araneus
ENSAMXG00000017773	vars2	83	62.000	ENSSPUG00000014700	VARS2	87	62.000	Sphenodon_punctatus
ENSAMXG00000017773	vars2	96	70.172	ENSSPAG00000004654	vars2	96	69.691	Stegastes_partitus
ENSAMXG00000017773	vars2	93	55.959	ENSSSCG00000001384	VARS2	94	56.448	Sus_scrofa
ENSAMXG00000017773	vars2	92	71.835	ENSTRUG00000005264	vars2	96	69.404	Takifugu_rubripes
ENSAMXG00000017773	vars2	96	67.947	ENSTNIG00000005916	vars2	96	66.763	Tetraodon_nigroviridis
ENSAMXG00000017773	vars2	80	57.426	ENSTTRG00000012243	VARS2	82	53.552	Tursiops_truncatus
ENSAMXG00000017773	vars2	97	52.726	ENSUAMG00000026124	VARS2	99	54.162	Ursus_americanus
ENSAMXG00000017773	vars2	97	52.869	ENSUMAG00000019894	VARS2	95	53.149	Ursus_maritimus
ENSAMXG00000017773	vars2	97	55.224	ENSVVUG00000010754	VARS2	91	53.102	Vulpes_vulpes
ENSAMXG00000017773	vars2	88	55.470	ENSXETG00000003036	vars2	94	55.470	Xenopus_tropicalis
ENSAMXG00000017773	vars2	95	70.276	ENSXCOG00000003455	vars2	96	69.940	Xiphophorus_couchianus
ENSAMXG00000017773	vars2	92	71.609	ENSXMAG00000013523	vars2	96	68.876	Xiphophorus_maculatus