EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017817 (Gene tree)
Gene ID: 103040063
Gene Symbol: si:ch211-11k18.4
Alias: -
Full Name: uncharacterized LOC103040063
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 8884 bases
Position: chr2:5967717-5976600
Accession: 103040063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000046779	MMR_HSR1	PF01926.23	3.1e-07	1	1
ENSAMXP00000018350	MMR_HSR1	PF01926.23	3.5e-07	1	1
ENSAMXP00000044629	MMR_HSR1	PF01926.23	3.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018350	-	2814	XM_007234471	ENSAMXP00000018350	449 (aa)	XP_007234533	W5LET8
ENSAMXT00000042443	-	2715	-	ENSAMXP00000046779	416 (aa)	-	-
ENSAMXT00000050696	-	1293	-	ENSAMXP00000044629	430 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000017817's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017817	si:ch211-11k18.4	99	60.000	ENSAMXG00000001190	si:dkey-98f17.5	100	60.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017817	si:ch211-11k18.4	99	83.519	ENSAPOG00000018833	si:ch211-11k18.4	99	83.519	Acanthochromis_polyacanthus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.352	ENSAPOG00000010378	si:dkey-98f17.5	100	60.352	Acanthochromis_polyacanthus
ENSAMXG00000017817	si:ch211-11k18.4	99	79.556	ENSACIG00000006696	si:ch211-11k18.4	99	79.556	Amphilophus_citrinellus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.692	ENSACIG00000017719	si:dkey-98f17.5	100	59.692	Amphilophus_citrinellus
ENSAMXG00000017817	si:ch211-11k18.4	100	83.556	ENSAOCG00000014284	si:ch211-11k18.4	99	83.556	Amphiprion_ocellaris
ENSAMXG00000017817	si:ch211-11k18.4	99	60.573	ENSAOCG00000008661	si:dkey-98f17.5	100	60.573	Amphiprion_ocellaris
ENSAMXG00000017817	si:ch211-11k18.4	99	60.573	ENSAPEG00000022447	si:dkey-98f17.5	100	60.573	Amphiprion_percula
ENSAMXG00000017817	si:ch211-11k18.4	100	83.333	ENSAPEG00000014910	si:ch211-11k18.4	99	83.333	Amphiprion_percula
ENSAMXG00000017817	si:ch211-11k18.4	100	82.000	ENSATEG00000004775	si:ch211-11k18.4	99	82.000	Anabas_testudineus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.307	ENSATEG00000007188	si:dkey-98f17.5	100	60.307	Anabas_testudineus
ENSAMXG00000017817	si:ch211-11k18.4	99	65.471	ENSACAG00000028632	-	98	65.471	Anolis_carolinensis
ENSAMXG00000017817	si:ch211-11k18.4	99	59.912	ENSACLG00000001308	si:dkey-98f17.5	100	59.912	Astatotilapia_calliptera
ENSAMXG00000017817	si:ch211-11k18.4	99	82.183	ENSACLG00000007907	si:ch211-11k18.4	99	82.183	Astatotilapia_calliptera
ENSAMXG00000017817	si:ch211-11k18.4	88	61.579	ENSCING00000020807	-	99	61.968	Ciona_intestinalis
ENSAMXG00000017817	si:ch211-11k18.4	99	59.778	ENSCSAVG00000009987	-	100	59.778	Ciona_savignyi
ENSAMXG00000017817	si:ch211-11k18.4	99	60.175	ENSCSEG00000017512	si:dkey-98f17.5	95	62.228	Cynoglossus_semilaevis
ENSAMXG00000017817	si:ch211-11k18.4	100	78.222	ENSCSEG00000017661	si:ch211-11k18.4	99	78.222	Cynoglossus_semilaevis
ENSAMXG00000017817	si:ch211-11k18.4	99	60.793	ENSCVAG00000011351	si:dkey-98f17.5	100	60.793	Cyprinodon_variegatus
ENSAMXG00000017817	si:ch211-11k18.4	100	83.556	ENSCVAG00000015346	si:ch211-11k18.4	99	83.556	Cyprinodon_variegatus
ENSAMXG00000017817	si:ch211-11k18.4	100	85.556	ENSDARG00000087869	si:ch211-11k18.4	100	92.857	Danio_rerio
ENSAMXG00000017817	si:ch211-11k18.4	98	59.910	ENSDARG00000068863	si:dkey-98f17.5	100	59.910	Danio_rerio
ENSAMXG00000017817	si:ch211-11k18.4	86	60.326	ENSEBUG00000007620	si:dkey-98f17.5	98	60.326	Eptatretus_burgeri
ENSAMXG00000017817	si:ch211-11k18.4	99	60.310	ENSELUG00000003365	si:dkey-98f17.5	100	60.310	Esox_lucius
ENSAMXG00000017817	si:ch211-11k18.4	99	60.132	ENSFHEG00000012744	si:dkey-98f17.5	100	60.132	Fundulus_heteroclitus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSFHEG00000019820	si:ch211-11k18.4	99	82.222	Fundulus_heteroclitus
ENSAMXG00000017817	si:ch211-11k18.4	90	76.485	ENSGMOG00000003492	si:ch211-11k18.4	100	76.485	Gadus_morhua
ENSAMXG00000017817	si:ch211-11k18.4	99	59.471	ENSGAFG00000012362	si:dkey-98f17.5	89	59.471	Gambusia_affinis
ENSAMXG00000017817	si:ch211-11k18.4	100	81.333	ENSGAFG00000005677	si:ch211-11k18.4	99	81.333	Gambusia_affinis
ENSAMXG00000017817	si:ch211-11k18.4	90	82.921	ENSGACG00000013134	si:ch211-11k18.4	100	82.921	Gasterosteus_aculeatus
ENSAMXG00000017817	si:ch211-11k18.4	60	73.485	ENSGACG00000009399	si:dkey-98f17.5	100	73.485	Gasterosteus_aculeatus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.132	ENSHBUG00000008331	si:dkey-98f17.5	100	60.132	Haplochromis_burtoni
ENSAMXG00000017817	si:ch211-11k18.4	99	82.405	ENSHBUG00000020638	si:ch211-11k18.4	99	82.405	Haplochromis_burtoni
ENSAMXG00000017817	si:ch211-11k18.4	99	58.333	ENSHCOG00000016505	si:dkey-98f17.5	98	58.333	Hippocampus_comes
ENSAMXG00000017817	si:ch211-11k18.4	100	82.667	ENSHCOG00000014773	si:ch211-11k18.4	100	82.667	Hippocampus_comes
ENSAMXG00000017817	si:ch211-11k18.4	96	80.556	ENSIPUG00000016678	si:ch211-11k18.4	99	80.556	Ictalurus_punctatus
ENSAMXG00000017817	si:ch211-11k18.4	100	57.111	ENSIPUG00000019981	si:dkey-98f17.5	100	57.556	Ictalurus_punctatus
ENSAMXG00000017817	si:ch211-11k18.4	89	70.927	ENSIPUG00000016694	si:ch211-11k18.4	88	70.927	Ictalurus_punctatus
ENSAMXG00000017817	si:ch211-11k18.4	100	81.111	ENSKMAG00000009327	si:ch211-11k18.4	99	81.111	Kryptolebias_marmoratus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.912	ENSKMAG00000014997	si:dkey-98f17.5	100	59.912	Kryptolebias_marmoratus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.307	ENSLBEG00000012756	si:dkey-98f17.5	100	60.307	Labrus_bergylta
ENSAMXG00000017817	si:ch211-11k18.4	100	63.111	ENSLACG00000004899	-	100	63.111	Latimeria_chalumnae
ENSAMXG00000017817	si:ch211-11k18.4	99	60.360	ENSLACG00000017433	si:dkey-98f17.5	98	60.360	Latimeria_chalumnae
ENSAMXG00000017817	si:ch211-11k18.4	100	70.288	ENSLACG00000006280	si:ch211-11k18.4	100	70.288	Latimeria_chalumnae
ENSAMXG00000017817	si:ch211-11k18.4	99	59.121	ENSLOCG00000003824	si:dkey-98f17.5	99	59.121	Lepisosteus_oculatus
ENSAMXG00000017817	si:ch211-11k18.4	96	83.565	ENSMAMG00000002536	si:ch211-11k18.4	99	83.565	Mastacembelus_armatus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.089	ENSMAMG00000014528	si:dkey-98f17.5	100	60.089	Mastacembelus_armatus
ENSAMXG00000017817	si:ch211-11k18.4	99	81.960	ENSMZEG00005008941	si:ch211-11k18.4	99	81.960	Maylandia_zebra
ENSAMXG00000017817	si:ch211-11k18.4	99	60.132	ENSMZEG00005016572	si:dkey-98f17.5	100	60.132	Maylandia_zebra
ENSAMXG00000017817	si:ch211-11k18.4	99	77.951	ENSMMOG00000012485	si:ch211-11k18.4	99	77.951	Mola_mola
ENSAMXG00000017817	si:ch211-11k18.4	98	60.586	ENSMALG00000012761	si:dkey-98f17.5	100	61.036	Monopterus_albus
ENSAMXG00000017817	si:ch211-11k18.4	100	80.667	ENSMALG00000019735	si:ch211-11k18.4	99	80.667	Monopterus_albus
ENSAMXG00000017817	si:ch211-11k18.4	96	81.713	ENSNBRG00000002220	si:ch211-11k18.4	98	81.713	Neolamprologus_brichardi
ENSAMXG00000017817	si:ch211-11k18.4	99	60.044	ENSNBRG00000006068	si:dkey-98f17.5	100	60.044	Neolamprologus_brichardi
ENSAMXG00000017817	si:ch211-11k18.4	99	60.352	ENSONIG00000013568	si:dkey-98f17.5	100	60.352	Oreochromis_niloticus
ENSAMXG00000017817	si:ch211-11k18.4	99	82.183	ENSONIG00000019412	si:ch211-11k18.4	99	82.183	Oreochromis_niloticus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSORLG00000012015	si:ch211-11k18.4	99	82.222	Oryzias_latipes
ENSAMXG00000017817	si:ch211-11k18.4	91	61.314	ENSORLG00000007958	si:dkey-98f17.5	95	61.314	Oryzias_latipes
ENSAMXG00000017817	si:ch211-11k18.4	100	81.778	ENSORLG00020012386	si:ch211-11k18.4	99	81.778	Oryzias_latipes_hni
ENSAMXG00000017817	si:ch211-11k18.4	99	59.692	ENSORLG00020013350	si:dkey-98f17.5	100	59.692	Oryzias_latipes_hni
ENSAMXG00000017817	si:ch211-11k18.4	99	59.471	ENSORLG00015002000	si:dkey-98f17.5	100	59.471	Oryzias_latipes_hsok
ENSAMXG00000017817	si:ch211-11k18.4	100	82.444	ENSORLG00015022862	si:ch211-11k18.4	99	82.444	Oryzias_latipes_hsok
ENSAMXG00000017817	si:ch211-11k18.4	99	59.471	ENSOMEG00000003154	si:dkey-98f17.5	100	59.471	Oryzias_melastigma
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSOMEG00000018686	si:ch211-11k18.4	99	82.222	Oryzias_melastigma
ENSAMXG00000017817	si:ch211-11k18.4	100	76.667	ENSPKIG00000023918	-	98	76.667	Paramormyrops_kingsleyae
ENSAMXG00000017817	si:ch211-11k18.4	99	59.645	ENSPKIG00000024621	si:dkey-98f17.5	100	59.645	Paramormyrops_kingsleyae
ENSAMXG00000017817	si:ch211-11k18.4	100	80.222	ENSPKIG00000018807	si:ch211-11k18.4	100	80.222	Paramormyrops_kingsleyae
ENSAMXG00000017817	si:ch211-11k18.4	99	59.912	ENSPMGG00000019065	si:dkey-98f17.5	100	59.912	Periophthalmus_magnuspinnatus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.000	ENSPMGG00000016507	si:ch211-11k18.4	99	82.000	Periophthalmus_magnuspinnatus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.444	ENSPFOG00000007976	si:ch211-11k18.4	99	82.444	Poecilia_formosa
ENSAMXG00000017817	si:ch211-11k18.4	99	59.737	ENSPFOG00000015142	si:dkey-98f17.5	100	59.737	Poecilia_formosa
ENSAMXG00000017817	si:ch211-11k18.4	100	82.444	ENSPLAG00000019794	si:ch211-11k18.4	99	82.444	Poecilia_latipinna
ENSAMXG00000017817	si:ch211-11k18.4	99	59.692	ENSPLAG00000003709	si:dkey-98f17.5	100	59.692	Poecilia_latipinna
ENSAMXG00000017817	si:ch211-11k18.4	99	59.912	ENSPMEG00000018709	si:dkey-98f17.5	94	59.912	Poecilia_mexicana
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSPMEG00000024198	si:ch211-11k18.4	99	82.407	Poecilia_mexicana
ENSAMXG00000017817	si:ch211-11k18.4	94	78.140	ENSPREG00000015319	si:ch211-11k18.4	98	78.140	Poecilia_reticulata
ENSAMXG00000017817	si:ch211-11k18.4	98	59.910	ENSPREG00000000708	si:dkey-98f17.5	100	59.910	Poecilia_reticulata
ENSAMXG00000017817	si:ch211-11k18.4	99	82.405	ENSPNYG00000017099	si:ch211-11k18.4	99	82.405	Pundamilia_nyererei
ENSAMXG00000017817	si:ch211-11k18.4	99	60.132	ENSPNYG00000017266	si:dkey-98f17.5	100	60.132	Pundamilia_nyererei
ENSAMXG00000017817	si:ch211-11k18.4	99	59.823	ENSPNAG00000021352	si:dkey-98f17.5	100	59.823	Pygocentrus_nattereri
ENSAMXG00000017817	si:ch211-11k18.4	100	93.111	ENSPNAG00000022138	si:ch211-11k18.4	100	93.111	Pygocentrus_nattereri
ENSAMXG00000017817	si:ch211-11k18.4	99	78.396	ENSSFOG00015000985	si:ch211-11k18.4	94	78.396	Scleropages_formosus
ENSAMXG00000017817	si:ch211-11k18.4	99	58.940	ENSSFOG00015017965	si:dkey-98f17.5	100	58.940	Scleropages_formosus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.000	ENSSMAG00000009651	si:ch211-11k18.4	99	82.000	Scophthalmus_maximus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.778	ENSSMAG00000011905	si:dkey-98f17.5	100	59.778	Scophthalmus_maximus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.889	ENSSDUG00000016411	si:ch211-11k18.4	99	82.889	Seriola_dumerili
ENSAMXG00000017817	si:ch211-11k18.4	99	59.465	ENSSDUG00000013457	si:dkey-98f17.5	99	59.465	Seriola_dumerili
ENSAMXG00000017817	si:ch211-11k18.4	99	59.243	ENSSLDG00000025395	si:dkey-98f17.5	99	59.243	Seriola_lalandi_dorsalis
ENSAMXG00000017817	si:ch211-11k18.4	100	82.667	ENSSLDG00000019145	si:ch211-11k18.4	99	82.667	Seriola_lalandi_dorsalis
ENSAMXG00000017817	si:ch211-11k18.4	87	66.244	ENSSPUG00000010096	-	99	66.244	Sphenodon_punctatus
ENSAMXG00000017817	si:ch211-11k18.4	99	60.793	ENSSPAG00000018800	si:dkey-98f17.5	100	60.793	Stegastes_partitus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSSPAG00000010697	si:ch211-11k18.4	99	82.222	Stegastes_partitus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.251	ENSTRUG00000021287	si:dkey-98f17.5	100	59.251	Takifugu_rubripes
ENSAMXG00000017817	si:ch211-11k18.4	100	81.778	ENSTRUG00000020291	si:ch211-11k18.4	99	81.778	Takifugu_rubripes
ENSAMXG00000017817	si:ch211-11k18.4	100	66.667	ENSXETG00000031783	-	100	66.667	Xenopus_tropicalis
ENSAMXG00000017817	si:ch211-11k18.4	100	78.000	ENSXCOG00000018094	si:ch211-11k18.4	99	78.000	Xiphophorus_couchianus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.823	ENSXCOG00000017002	si:dkey-98f17.5	100	59.823	Xiphophorus_couchianus
ENSAMXG00000017817	si:ch211-11k18.4	100	82.222	ENSXMAG00000021235	si:ch211-11k18.4	99	82.222	Xiphophorus_maculatus
ENSAMXG00000017817	si:ch211-11k18.4	99	59.692	ENSXMAG00000007688	si:dkey-98f17.5	95	59.692	Xiphophorus_maculatus