EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000017837 (Gene tree)
Gene ID: 103042292
Gene Symbol: ddx39b
Alias: bat1|zgc:63773
Full Name: spliceosome RNA helicase DDX39B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 23316 bases
Position: chr23:16232202-16255517
Accession: 103042292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018374	ResIII	PF04851.15	2e-07	1	1
ENSAMXP00000018374	DEAD	PF00270.29	1.2e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018374	-	3287	XM_007231723	ENSAMXP00000018374	436 (aa)	XP_007231785	W5LEW2

Gene Model

Click here to download ENSAMXG00000017837's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000017837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000017837	ddx39b	84	30.376	ENSAMXG00000004457	ddx43	51	30.319
ENSAMXG00000017837	ddx39b	100	86.697	ENSAMXG00000018631	DDX39A	100	86.468
ENSAMXG00000017837	ddx39b	88	30.693	ENSAMXG00000013396	ddx3xb	65	30.693
ENSAMXG00000017837	ddx39b	95	34.856	ENSAMXG00000032542	ddx61	85	34.856
ENSAMXG00000017837	ddx39b	87	36.579	ENSAMXG00000033980	-	76	36.579
ENSAMXG00000017837	ddx39b	80	30.000	ENSAMXG00000015550	DDX5	57	30.000
ENSAMXG00000017837	ddx39b	84	30.423	ENSAMXG00000015325	zgc:193690	82	30.423
ENSAMXG00000017837	ddx39b	86	30.670	ENSAMXG00000035102	ddx59	57	30.670
ENSAMXG00000017837	ddx39b	90	36.132	ENSAMXG00000040730	eif4a1b	95	36.132
ENSAMXG00000017837	ddx39b	84	31.217	ENSAMXG00000043100	ddx19	76	31.135
ENSAMXG00000017837	ddx39b	85	32.546	ENSAMXG00000000911	ddx27	56	31.050
ENSAMXG00000017837	ddx39b	83	38.398	ENSAMXG00000020882	eif4a3	91	38.398
ENSAMXG00000017837	ddx39b	89	37.852	ENSAMXG00000019126	eif4a2	94	37.755
ENSAMXG00000017837	ddx39b	64	30.526	ENSAMXG00000042015	-	87	30.526
ENSAMXG00000017837	ddx39b	90	37.817	ENSAMXG00000030251	eif4a1a	96	37.817
ENSAMXG00000017837	ddx39b	85	32.283	ENSAMXG00000016919	ddx49	79	32.283
ENSAMXG00000017837	ddx39b	85	30.052	ENSAMXG00000002956	DDX41	62	30.052
ENSAMXG00000017837	ddx39b	87	36.579	ENSAMXG00000019553	ddx6	77	36.579
ENSAMXG00000017837	ddx39b	100	86.468	ENSAMXG00000015256	-	100	86.697
ENSAMXG00000017837	ddx39b	79	35.159	ENSAMXG00000010727	ddx47	73	35.159

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000017837	ddx39b	100	92.431	ENSG00000198563	DDX39B	100	92.431	Homo_sapiens
ENSAMXG00000017837	ddx39b	100	92.661	ENSAMEG00000009508	DDX39B	99	92.661	Ailuropoda_melanoleuca
ENSAMXG00000017837	ddx39b	99	92.807	ENSACIG00000004534	ddx39b	98	93.735	Amphilophus_citrinellus
ENSAMXG00000017837	ddx39b	100	93.349	ENSATEG00000012366	ddx39b	100	93.349	Anabas_testudineus
ENSAMXG00000017837	ddx39b	100	91.533	ENSACAG00000012240	DDX39B	100	91.533	Anolis_carolinensis
ENSAMXG00000017837	ddx39b	100	92.431	ENSANAG00000030372	DDX39B	100	92.431	Aotus_nancymaae
ENSAMXG00000017837	ddx39b	99	91.724	ENSACLG00000018759	ddx39b	99	92.184	Astatotilapia_calliptera
ENSAMXG00000017837	ddx39b	100	92.431	ENSBTAG00000014490	DDX39B	100	92.431	Bos_taurus
ENSAMXG00000017837	ddx39b	100	92.431	ENSCJAG00000003152	DDX39B	100	92.431	Callithrix_jacchus
ENSAMXG00000017837	ddx39b	100	92.890	ENSCAFG00000000509	DDX39B	100	96.129	Canis_familiaris
ENSAMXG00000017837	ddx39b	100	92.890	ENSCAFG00020020530	DDX39B	100	92.890	Canis_lupus_dingo
ENSAMXG00000017837	ddx39b	100	92.431	ENSCHIG00000004579	DDX39B	100	92.431	Capra_hircus
ENSAMXG00000017837	ddx39b	100	79.817	ENSTSYG00000029741	-	94	76.883	Carlito_syrichta
ENSAMXG00000017837	ddx39b	100	92.431	ENSTSYG00000010226	-	100	92.431	Carlito_syrichta
ENSAMXG00000017837	ddx39b	100	92.202	ENSCAPG00000010066	DDX39B	100	92.202	Cavia_aperea
ENSAMXG00000017837	ddx39b	100	92.202	ENSCPOG00000002335	DDX39B	100	92.202	Cavia_porcellus
ENSAMXG00000017837	ddx39b	100	92.431	ENSCCAG00000027897	DDX39B	100	92.431	Cebus_capucinus
ENSAMXG00000017837	ddx39b	99	83.141	ENSCATG00000043709	DDX39B	99	83.141	Cercocebus_atys
ENSAMXG00000017837	ddx39b	100	92.202	ENSCLAG00000014555	DDX39B	100	92.202	Chinchilla_lanigera
ENSAMXG00000017837	ddx39b	99	92.148	ENSCSAG00000008517	DDX39B	100	92.148	Chlorocebus_sabaeus
ENSAMXG00000017837	ddx39b	63	95.971	ENSCPBG00000014671	-	100	95.971	Chrysemys_picta_bellii
ENSAMXG00000017837	ddx39b	100	92.431	ENSCANG00000041217	DDX39B	100	92.431	Colobus_angolensis_palliatus
ENSAMXG00000017837	ddx39b	82	81.285	ENSCGRG00001021916	-	89	81.285	Cricetulus_griseus_chok1gshd
ENSAMXG00000017837	ddx39b	58	89.328	ENSCGRG00001017315	-	95	87.383	Cricetulus_griseus_chok1gshd
ENSAMXG00000017837	ddx39b	58	89.328	ENSCGRG00000012479	-	76	89.328	Cricetulus_griseus_crigri
ENSAMXG00000017837	ddx39b	100	96.560	ENSDARG00000036069	ddx39b	100	96.560	Danio_rerio
ENSAMXG00000017837	ddx39b	100	92.431	ENSDNOG00000010215	DDX39B	100	92.431	Dasypus_novemcinctus
ENSAMXG00000017837	ddx39b	88	92.408	ENSDORG00000004985	Ddx39b	100	92.408	Dipodomys_ordii
ENSAMXG00000017837	ddx39b	88	80.105	ENSETEG00000009649	DDX39B	87	80.105	Echinops_telfairi
ENSAMXG00000017837	ddx39b	100	92.431	ENSEASG00005017156	DDX39B	100	92.431	Equus_asinus_asinus
ENSAMXG00000017837	ddx39b	100	92.431	ENSECAG00000007750	DDX39B	100	92.431	Equus_caballus
ENSAMXG00000017837	ddx39b	100	92.202	ENSELUG00000017904	ddx39b	100	92.202	Esox_lucius
ENSAMXG00000017837	ddx39b	100	92.661	ENSFCAG00000004497	DDX39B	100	92.661	Felis_catus
ENSAMXG00000017837	ddx39b	100	92.202	ENSFDAG00000011074	DDX39B	100	92.202	Fukomys_damarensis
ENSAMXG00000017837	ddx39b	72	96.203	ENSGAGG00000001300	-	80	96.203	Gopherus_agassizii
ENSAMXG00000017837	ddx39b	100	92.431	ENSGGOG00000005989	DDX39B	100	92.431	Gorilla_gorilla
ENSAMXG00000017837	ddx39b	100	92.202	ENSHGLG00000019248	DDX39B	100	92.202	Heterocephalus_glaber_female
ENSAMXG00000017837	ddx39b	100	92.202	ENSHGLG00100011850	DDX39B	100	92.202	Heterocephalus_glaber_male
ENSAMXG00000017837	ddx39b	100	96.560	ENSIPUG00000015733	DDX39B	94	96.560	Ictalurus_punctatus
ENSAMXG00000017837	ddx39b	100	91.972	ENSSTOG00000012838	DDX39B	100	91.972	Ictidomys_tridecemlineatus
ENSAMXG00000017837	ddx39b	100	91.743	ENSJJAG00000005660	-	100	91.743	Jaculus_jaculus
ENSAMXG00000017837	ddx39b	64	80.427	ENSLBEG00000017177	-	81	80.427	Labrus_bergylta
ENSAMXG00000017837	ddx39b	99	77.494	ENSLBEG00000012254	ddx39b	99	78.654	Labrus_bergylta
ENSAMXG00000017837	ddx39b	100	83.710	ENSLACG00000002110	DDX39B	100	83.710	Latimeria_chalumnae
ENSAMXG00000017837	ddx39b	100	92.202	ENSLAFG00000014202	DDX39B	100	92.202	Loxodonta_africana
ENSAMXG00000017837	ddx39b	100	92.431	ENSMFAG00000034233	DDX39B	100	92.431	Macaca_fascicularis
ENSAMXG00000017837	ddx39b	100	92.431	ENSMMUG00000008839	DDX39B	100	92.431	Macaca_mulatta
ENSAMXG00000017837	ddx39b	100	92.431	ENSMNEG00000041059	DDX39B	100	92.431	Macaca_nemestrina
ENSAMXG00000017837	ddx39b	100	92.431	ENSMLEG00000043791	DDX39B	100	92.431	Mandrillus_leucophaeus
ENSAMXG00000017837	ddx39b	99	91.954	ENSMZEG00005017654	ddx39b	99	92.414	Maylandia_zebra
ENSAMXG00000017837	ddx39b	100	92.431	ENSMAUG00000008059	Ddx39b	100	92.431	Mesocricetus_auratus
ENSAMXG00000017837	ddx39b	100	92.431	ENSMICG00000017349	DDX39B	100	92.431	Microcebus_murinus
ENSAMXG00000017837	ddx39b	100	92.661	ENSMOCG00000011169	Ddx39b	100	92.661	Microtus_ochrogaster
ENSAMXG00000017837	ddx39b	88	91.927	ENSMODG00000015791	DDX39B	88	92.188	Monodelphis_domestica
ENSAMXG00000017837	ddx39b	100	92.661	ENSMUSG00000019432	Ddx39b	100	95.270	Mus_musculus
ENSAMXG00000017837	ddx39b	100	92.661	MGP_PahariEiJ_G0020513	Ddx39b	100	95.270	Mus_pahari
ENSAMXG00000017837	ddx39b	100	92.661	MGP_SPRETEiJ_G0022424	Ddx39b	100	92.661	Mus_spretus
ENSAMXG00000017837	ddx39b	100	92.661	ENSMPUG00000011407	DDX39B	100	92.661	Mustela_putorius_furo
ENSAMXG00000017837	ddx39b	71	96.141	ENSMLUG00000001681	DDX39B	100	96.141	Myotis_lucifugus
ENSAMXG00000017837	ddx39b	100	92.431	ENSNGAG00000022948	Ddx39b	100	92.431	Nannospalax_galili
ENSAMXG00000017837	ddx39b	83	95.789	ENSNLEG00000006094	DDX39B	100	95.789	Nomascus_leucogenys
ENSAMXG00000017837	ddx39b	86	97.748	ENSMEUG00000008264	DDX39B	86	97.748	Notamacropus_eugenii
ENSAMXG00000017837	ddx39b	100	92.661	ENSOPRG00000011923	DDX39B	100	92.661	Ochotona_princeps
ENSAMXG00000017837	ddx39b	100	92.431	ENSODEG00000018083	DDX39B	100	92.431	Octodon_degus
ENSAMXG00000017837	ddx39b	100	91.743	ENSONIG00000004740	ddx39b	100	92.431	Oreochromis_niloticus
ENSAMXG00000017837	ddx39b	56	87.755	ENSOANG00000008361	DDX39B	95	87.755	Ornithorhynchus_anatinus
ENSAMXG00000017837	ddx39b	100	89.357	ENSOCUG00000024126	DDX39B	100	89.357	Oryctolagus_cuniculus
ENSAMXG00000017837	ddx39b	82	88.503	ENSOGAG00000009067	-	100	94.753	Otolemur_garnettii
ENSAMXG00000017837	ddx39b	100	91.533	ENSOGAG00000028850	-	100	91.533	Otolemur_garnettii
ENSAMXG00000017837	ddx39b	100	92.431	ENSOARG00000008787	DDX39B	98	92.431	Ovis_aries
ENSAMXG00000017837	ddx39b	100	92.431	ENSPPAG00000043072	DDX39B	100	92.431	Pan_paniscus
ENSAMXG00000017837	ddx39b	100	92.661	ENSPPRG00000001913	DDX39B	100	92.661	Panthera_pardus
ENSAMXG00000017837	ddx39b	100	91.972	ENSPTIG00000017669	DDX39B	100	91.972	Panthera_tigris_altaica
ENSAMXG00000017837	ddx39b	100	92.431	ENSPTRG00000032509	DDX39B	100	92.431	Pan_troglodytes
ENSAMXG00000017837	ddx39b	100	92.431	ENSPANG00000018609	DDX39B	100	92.431	Papio_anubis
ENSAMXG00000017837	ddx39b	100	96.339	ENSPKIG00000011324	ddx39b	100	96.339	Paramormyrops_kingsleyae
ENSAMXG00000017837	ddx39b	100	92.431	ENSPEMG00000016905	Ddx39b	100	92.431	Peromyscus_maniculatus_bairdii
ENSAMXG00000017837	ddx39b	100	92.431	ENSPCIG00000017572	DDX39B	100	92.431	Phascolarctos_cinereus
ENSAMXG00000017837	ddx39b	100	92.431	ENSPPYG00000016433	DDX39B	100	92.431	Pongo_abelii
ENSAMXG00000017837	ddx39b	65	95.775	ENSPCAG00000003484	DDX39B	100	95.775	Procavia_capensis
ENSAMXG00000017837	ddx39b	100	92.431	ENSPCOG00000018656	DDX39B	100	92.431	Propithecus_coquereli
ENSAMXG00000017837	ddx39b	100	92.890	ENSPVAG00000004653	DDX39B	100	92.890	Pteropus_vampyrus
ENSAMXG00000017837	ddx39b	98	82.710	ENSPNYG00000010382	ddx39b	98	83.991	Pundamilia_nyererei
ENSAMXG00000017837	ddx39b	100	98.853	ENSPNAG00000026926	ddx39b	100	98.853	Pygocentrus_nattereri
ENSAMXG00000017837	ddx39b	100	92.661	ENSRNOG00000000841	Ddx39b	100	92.661	Rattus_norvegicus
ENSAMXG00000017837	ddx39b	100	82.339	ENSRBIG00000031309	DDX39B	100	82.339	Rhinopithecus_bieti
ENSAMXG00000017837	ddx39b	100	92.431	ENSRROG00000039517	DDX39B	100	92.431	Rhinopithecus_roxellana
ENSAMXG00000017837	ddx39b	100	82.339	ENSSBOG00000035513	-	100	82.339	Saimiri_boliviensis_boliviensis
ENSAMXG00000017837	ddx39b	100	92.431	ENSSHAG00000003209	DDX39B	100	92.431	Sarcophilus_harrisii
ENSAMXG00000017837	ddx39b	100	96.110	ENSSFOG00015016107	ddx39b	100	96.110	Scleropages_formosus
ENSAMXG00000017837	ddx39b	100	93.349	ENSSDUG00000011557	ddx39b	100	94.037	Seriola_dumerili
ENSAMXG00000017837	ddx39b	100	93.578	ENSSLDG00000015763	ddx39b	100	94.266	Seriola_lalandi_dorsalis
ENSAMXG00000017837	ddx39b	88	81.414	ENSSARG00000005245	DDX39B	100	81.414	Sorex_araneus
ENSAMXG00000017837	ddx39b	100	91.972	ENSSPUG00000012805	DDX39B	100	91.972	Sphenodon_punctatus
ENSAMXG00000017837	ddx39b	100	92.431	ENSSSCG00000001400	DDX39B	100	96.532	Sus_scrofa
ENSAMXG00000017837	ddx39b	100	69.954	ENSTBEG00000003721	DDX39B	100	69.954	Tupaia_belangeri
ENSAMXG00000017837	ddx39b	100	85.261	ENSTTRG00000014074	DDX39B	100	85.261	Tursiops_truncatus
ENSAMXG00000017837	ddx39b	100	80.594	ENSUAMG00000027335	DDX39B	100	80.594	Ursus_americanus
ENSAMXG00000017837	ddx39b	100	83.945	ENSUMAG00000015124	DDX39B	100	83.945	Ursus_maritimus
ENSAMXG00000017837	ddx39b	62	82.645	ENSVPAG00000009167	-	74	82.645	Vicugna_pacos
ENSAMXG00000017837	ddx39b	100	92.890	ENSVVUG00000019518	DDX39B	99	92.890	Vulpes_vulpes
ENSAMXG00000017837	ddx39b	100	81.279	ENSXETG00000002498	ddx39b	99	81.279	Xenopus_tropicalis