EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000018154 (Gene tree)
Gene ID: 103042131
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 13816 bases
Position: chr5:14333804-14347619
Accession: 103042131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000052709	RRM_5	PF13893.6	3e-06	1	1
ENSAMXP00000018697	RRM_5	PF13893.6	3e-06	1	1
ENSAMXP00000018697	RRM_1	PF00076.22	1.6e-13	1	1
ENSAMXP00000052709	RRM_1	PF00076.22	1.6e-13	1	1
ENSAMXP00000018697	SAP	PF02037.27	4.9e-08	1	1
ENSAMXP00000052709	SAP	PF02037.27	4.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018697	-	2583	-	ENSAMXP00000018697	860 (aa)	-	W5LFT5
ENSAMXT00000036884	-	5769	XM_007240122	ENSAMXP00000052709	854 (aa)	XP_007240184	UPI000BBDC8DC

Gene Model

Click here to download ENSAMXG00000018154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018154	safb	94	44.382	ENSG00000160633	SAFB	85	57.447	Homo_sapiens
ENSAMXG00000018154	safb	98	64.937	ENSAPOG00000022508	safb	97	64.916	Acanthochromis_polyacanthus
ENSAMXG00000018154	safb	66	42.695	ENSAMEG00000012254	SAFB	91	44.759	Ailuropoda_melanoleuca
ENSAMXG00000018154	safb	100	59.200	ENSACIG00000006247	safb	98	58.499	Amphilophus_citrinellus
ENSAMXG00000018154	safb	100	59.701	ENSAOCG00000006308	safb	99	63.703	Amphiprion_ocellaris
ENSAMXG00000018154	safb	100	64.846	ENSAPEG00000023342	safb	98	64.512	Amphiprion_percula
ENSAMXG00000018154	safb	100	63.009	ENSATEG00000004998	safb	98	63.795	Anabas_testudineus
ENSAMXG00000018154	safb	58	47.874	ENSAPLG00000006355	-	96	51.241	Anas_platyrhynchos
ENSAMXG00000018154	safb	58	43.088	ENSAPLG00000005780	-	93	46.446	Anas_platyrhynchos
ENSAMXG00000018154	safb	94	44.557	ENSANAG00000028821	SAFB	91	44.470	Aotus_nancymaae
ENSAMXG00000018154	safb	100	63.103	ENSACLG00000001926	safb	98	62.604	Astatotilapia_calliptera
ENSAMXG00000018154	safb	98	43.668	ENSBTAG00000007875	SAFB	95	43.192	Bos_taurus
ENSAMXG00000018154	safb	66	61.538	ENSCJAG00000017081	SAFB	84	53.684	Callithrix_jacchus
ENSAMXG00000018154	safb	65	42.763	ENSCAFG00000018803	SAFB	79	44.767	Canis_familiaris
ENSAMXG00000018154	safb	65	42.693	ENSCAFG00020018943	SAFB	91	44.767	Canis_lupus_dingo
ENSAMXG00000018154	safb	98	44.530	ENSCHIG00000007262	SAFB	95	43.736	Capra_hircus
ENSAMXG00000018154	safb	94	44.781	ENSCCAG00000020193	SAFB	91	44.585	Cebus_capucinus
ENSAMXG00000018154	safb	94	43.503	ENSCATG00000029994	SAFB	91	44.457	Cercocebus_atys
ENSAMXG00000018154	safb	63	42.504	ENSCLAG00000007734	SAFB	91	44.710	Chinchilla_lanigera
ENSAMXG00000018154	safb	64	43.760	ENSCSAG00000009949	SAFB	91	44.111	Chlorocebus_sabaeus
ENSAMXG00000018154	safb	90	46.840	ENSCPBG00000010936	-	97	48.216	Chrysemys_picta_bellii
ENSAMXG00000018154	safb	92	43.991	ENSCPBG00000010928	-	92	45.714	Chrysemys_picta_bellii
ENSAMXG00000018154	safb	68	41.654	ENSCANG00000004774	-	85	57.447	Colobus_angolensis_palliatus
ENSAMXG00000018154	safb	97	43.348	ENSCANG00000019754	-	90	40.909	Colobus_angolensis_palliatus
ENSAMXG00000018154	safb	98	56.757	ENSCSEG00000019870	safb	97	56.348	Cynoglossus_semilaevis
ENSAMXG00000018154	safb	99	55.336	ENSCVAG00000002226	safb	66	63.720	Cyprinodon_variegatus
ENSAMXG00000018154	safb	97	68.772	ENSDARG00000020467	safb	97	68.816	Danio_rerio
ENSAMXG00000018154	safb	64	42.788	ENSDNOG00000015746	SAFB	95	37.662	Dasypus_novemcinctus
ENSAMXG00000018154	safb	62	42.810	ENSDORG00000016200	Safb	91	42.334	Dipodomys_ordii
ENSAMXG00000018154	safb	62	44.202	ENSEASG00005023019	SAFB	92	42.232	Equus_asinus_asinus
ENSAMXG00000018154	safb	62	44.260	ENSECAG00000018659	SAFB	84	45.161	Equus_caballus
ENSAMXG00000018154	safb	100	63.158	ENSELUG00000022327	safb	99	62.007	Esox_lucius
ENSAMXG00000018154	safb	65	42.693	ENSFCAG00000011835	SAFB	91	45.012	Felis_catus
ENSAMXG00000018154	safb	55	44.964	ENSFALG00000013881	-	92	49.204	Ficedula_albicollis
ENSAMXG00000018154	safb	63	44.370	ENSFALG00000013882	-	89	45.645	Ficedula_albicollis
ENSAMXG00000018154	safb	67	42.508	ENSFDAG00000020306	SAFB	77	43.087	Fukomys_damarensis
ENSAMXG00000018154	safb	66	66.608	ENSFHEG00000004219	safb	66	66.789	Fundulus_heteroclitus
ENSAMXG00000018154	safb	100	56.689	ENSGMOG00000014280	safb	98	59.165	Gadus_morhua
ENSAMXG00000018154	safb	62	46.080	ENSGALG00000001948	-	90	50.000	Gallus_gallus
ENSAMXG00000018154	safb	65	43.942	ENSGALG00000013365	-	97	45.683	Gallus_gallus
ENSAMXG00000018154	safb	99	54.402	ENSGAFG00000016162	safb	97	54.057	Gambusia_affinis
ENSAMXG00000018154	safb	98	61.477	ENSGACG00000011385	safb	97	59.133	Gasterosteus_aculeatus
ENSAMXG00000018154	safb	64	52.971	ENSGAGG00000017702	-	80	56.030	Gopherus_agassizii
ENSAMXG00000018154	safb	92	49.724	ENSGAGG00000008424	-	98	50.108	Gopherus_agassizii
ENSAMXG00000018154	safb	94	43.771	ENSGGOG00000015109	SAFB	85	57.447	Gorilla_gorilla
ENSAMXG00000018154	safb	100	57.865	ENSHBUG00000009218	safb	98	56.450	Haplochromis_burtoni
ENSAMXG00000018154	safb	63	42.810	ENSHGLG00000015883	SAFB	91	44.255	Heterocephalus_glaber_female
ENSAMXG00000018154	safb	63	42.810	ENSHGLG00100004228	SAFB	73	42.080	Heterocephalus_glaber_male
ENSAMXG00000018154	safb	94	54.192	ENSHCOG00000001705	safb	98	55.177	Hippocampus_comes
ENSAMXG00000018154	safb	97	76.576	ENSIPUG00000024869	safb2	98	75.801	Ictalurus_punctatus
ENSAMXG00000018154	safb	58	41.197	ENSSTOG00000002783	SAFB	91	43.207	Ictidomys_tridecemlineatus
ENSAMXG00000018154	safb	64	39.315	ENSJJAG00000009021	Safb	91	44.470	Jaculus_jaculus
ENSAMXG00000018154	safb	100	61.416	ENSKMAG00000022308	safb	98	62.000	Kryptolebias_marmoratus
ENSAMXG00000018154	safb	100	60.738	ENSLBEG00000006015	safb	98	60.000	Labrus_bergylta
ENSAMXG00000018154	safb	63	47.848	ENSLACG00000018090	SAFB	96	52.285	Latimeria_chalumnae
ENSAMXG00000018154	safb	98	64.343	ENSLOCG00000003613	safb	98	65.607	Lepisosteus_oculatus
ENSAMXG00000018154	safb	96	44.009	ENSLAFG00000003840	SAFB	93	44.114	Loxodonta_africana
ENSAMXG00000018154	safb	94	44.469	ENSMFAG00000003885	SAFB	85	57.447	Macaca_fascicularis
ENSAMXG00000018154	safb	94	45.209	ENSMMUG00000017970	SAFB	85	57.447	Macaca_mulatta
ENSAMXG00000018154	safb	64	42.464	ENSMNEG00000035637	SAFB	85	57.447	Macaca_nemestrina
ENSAMXG00000018154	safb	94	43.225	ENSMLEG00000038637	SAFB	85	57.447	Mandrillus_leucophaeus
ENSAMXG00000018154	safb	99	62.642	ENSMAMG00000003357	safb	89	63.015	Mastacembelus_armatus
ENSAMXG00000018154	safb	100	63.103	ENSMZEG00005009120	safb	98	62.645	Maylandia_zebra
ENSAMXG00000018154	safb	62	42.953	ENSMGAG00000001101	-	94	45.751	Meleagris_gallopavo
ENSAMXG00000018154	safb	62	48.316	ENSMGAG00000001051	-	97	50.182	Meleagris_gallopavo
ENSAMXG00000018154	safb	66	43.799	ENSMICG00000008739	-	91	44.637	Microcebus_murinus
ENSAMXG00000018154	safb	85	39.268	ENSMICG00000046795	-	89	62.791	Microcebus_murinus
ENSAMXG00000018154	safb	95	43.833	ENSMODG00000001236	SAFB	92	44.710	Monodelphis_domestica
ENSAMXG00000018154	safb	100	62.695	ENSMALG00000020330	safb	98	62.485	Monopterus_albus
ENSAMXG00000018154	safb	67	42.587	ENSMPUG00000006123	SAFB	86	45.000	Mustela_putorius_furo
ENSAMXG00000018154	safb	98	43.629	ENSMLUG00000001081	SAFB	91	45.202	Myotis_lucifugus
ENSAMXG00000018154	safb	96	44.543	ENSNLEG00000013551	SAFB	95	44.264	Nomascus_leucogenys
ENSAMXG00000018154	safb	58	41.530	ENSOPRG00000011561	-	96	41.884	Ochotona_princeps
ENSAMXG00000018154	safb	63	42.434	ENSODEG00000014838	SAFB	91	44.596	Octodon_degus
ENSAMXG00000018154	safb	100	62.514	ENSONIG00000002318	safb	98	62.194	Oreochromis_niloticus
ENSAMXG00000018154	safb	86	39.183	ENSOCUG00000014628	SAFB	91	39.313	Oryctolagus_cuniculus
ENSAMXG00000018154	safb	96	59.386	ENSORLG00000016989	safb	96	58.502	Oryzias_latipes
ENSAMXG00000018154	safb	96	56.695	ENSORLG00020000404	safb	96	54.885	Oryzias_latipes_hni
ENSAMXG00000018154	safb	96	59.788	ENSORLG00015010733	safb	97	58.907	Oryzias_latipes_hsok
ENSAMXG00000018154	safb	99	58.971	ENSOMEG00000009066	safb	97	57.558	Oryzias_melastigma
ENSAMXG00000018154	safb	65	43.393	ENSOGAG00000027769	SAFB	57	51.009	Otolemur_garnettii
ENSAMXG00000018154	safb	78	41.553	ENSOARG00000007856	-	99	39.532	Ovis_aries
ENSAMXG00000018154	safb	98	40.874	ENSOARG00000007662	-	95	40.000	Ovis_aries
ENSAMXG00000018154	safb	94	44.382	ENSPPAG00000035129	SAFB	85	57.447	Pan_paniscus
ENSAMXG00000018154	safb	65	42.693	ENSPPRG00000017197	SAFB	91	45.012	Panthera_pardus
ENSAMXG00000018154	safb	94	44.382	ENSPTRG00000010335	SAFB	85	57.447	Pan_troglodytes
ENSAMXG00000018154	safb	94	44.581	ENSPANG00000007770	SAFB	85	57.447	Papio_anubis
ENSAMXG00000018154	safb	100	65.889	ENSPKIG00000009902	safb	98	65.904	Paramormyrops_kingsleyae
ENSAMXG00000018154	safb	97	47.198	ENSPSIG00000011679	-	96	49.592	Pelodiscus_sinensis
ENSAMXG00000018154	safb	98	46.838	ENSPSIG00000009367	-	92	47.086	Pelodiscus_sinensis
ENSAMXG00000018154	safb	57	49.620	ENSPCIG00000009504	-	96	52.953	Phascolarctos_cinereus
ENSAMXG00000018154	safb	99	55.388	ENSPFOG00000007745	safb	100	52.701	Poecilia_formosa
ENSAMXG00000018154	safb	99	55.401	ENSPLAG00000001614	safb	97	53.211	Poecilia_latipinna
ENSAMXG00000018154	safb	99	55.220	ENSPMEG00000021023	safb	99	54.332	Poecilia_mexicana
ENSAMXG00000018154	safb	99	55.906	ENSPREG00000012496	safb	97	54.706	Poecilia_reticulata
ENSAMXG00000018154	safb	64	43.648	ENSPPYG00000009428	SAFB	91	44.264	Pongo_abelii
ENSAMXG00000018154	safb	95	41.694	ENSPCOG00000014090	SAFB	91	41.319	Propithecus_coquereli
ENSAMXG00000018154	safb	94	41.903	ENSPVAG00000004913	SAFB	71	55.118	Pteropus_vampyrus
ENSAMXG00000018154	safb	100	83.834	ENSPNAG00000021838	safb	98	84.167	Pygocentrus_nattereri
ENSAMXG00000018154	safb	86	52.542	ENSRBIG00000042509	SAFB	85	57.447	Rhinopithecus_bieti
ENSAMXG00000018154	safb	94	44.283	ENSRROG00000029278	SAFB	85	57.447	Rhinopithecus_roxellana
ENSAMXG00000018154	safb	94	44.383	ENSSBOG00000026291	SAFB	91	44.700	Saimiri_boliviensis_boliviensis
ENSAMXG00000018154	safb	100	65.775	ENSSFOG00015008156	safb	98	65.557	Scleropages_formosus
ENSAMXG00000018154	safb	100	59.910	ENSSMAG00000009316	safb	98	62.427	Scophthalmus_maximus
ENSAMXG00000018154	safb	100	62.025	ENSSDUG00000009652	safb	98	62.118	Seriola_dumerili
ENSAMXG00000018154	safb	100	60.811	ENSSLDG00000001670	safb	98	62.920	Seriola_lalandi_dorsalis
ENSAMXG00000018154	safb	58	40.215	ENSSARG00000010475	SAFB	94	39.430	Sorex_araneus
ENSAMXG00000018154	safb	50	43.411	ENSSPUG00000009820	-	71	56.143	Sphenodon_punctatus
ENSAMXG00000018154	safb	56	40.344	ENSSPUG00000009747	-	95	41.972	Sphenodon_punctatus
ENSAMXG00000018154	safb	98	61.313	ENSSPAG00000015682	safb	96	60.838	Stegastes_partitus
ENSAMXG00000018154	safb	94	44.235	ENSSSCG00000013522	SAFB	98	45.833	Sus_scrofa
ENSAMXG00000018154	safb	63	43.770	ENSTGUG00000000502	-	97	44.395	Taeniopygia_guttata
ENSAMXG00000018154	safb	63	47.240	ENSTGUG00000000489	-	99	50.344	Taeniopygia_guttata
ENSAMXG00000018154	safb	100	59.701	ENSTRUG00000003567	safb	98	61.893	Takifugu_rubripes
ENSAMXG00000018154	safb	90	54.293	ENSTNIG00000015470	safb	100	54.177	Tetraodon_nigroviridis
ENSAMXG00000018154	safb	83	76.316	ENSTTRG00000013588	SAFB	63	60.714	Tursiops_truncatus
ENSAMXG00000018154	safb	73	44.054	ENSUMAG00000009734	SAFB	73	60.674	Ursus_maritimus
ENSAMXG00000018154	safb	65	42.599	ENSVVUG00000013720	SAFB	79	44.767	Vulpes_vulpes
ENSAMXG00000018154	safb	87	45.050	ENSXETG00000008755	safb	83	54.783	Xenopus_tropicalis
ENSAMXG00000018154	safb	99	55.309	ENSXMAG00000003458	safb	92	65.688	Xiphophorus_maculatus