EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018180 (Gene tree)
Gene ID: 103023011
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 18542 bases
Position: chr4:22013889-22032430
Accession: 103023011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018723	DND1_DSRM	PF14709.7	2.9e-25	1	1
ENSAMXP00000018723	RRM_1	PF00076.22	3.3e-33	1	3
ENSAMXP00000018723	RRM_1	PF00076.22	3.3e-33	2	3
ENSAMXP00000018723	RRM_1	PF00076.22	3.3e-33	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018723	-	1755	XM_022669447	ENSAMXP00000018723	584 (aa)	XP_022525168	W5LFW1

Gene Model

Click here to download ENSAMXG00000018180's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018180's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018180	a1cf	85	55.096	ENSAMXG00000009397	rbm46	98	55.096
ENSAMXG00000018180	a1cf	92	45.534	ENSAMXG00000021794	rbm47	77	46.981
ENSAMXG00000018180	a1cf	82	44.650	ENSAMXG00000020892	-	75	46.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018180	a1cf	100	75.041	ENSG00000148584	A1CF	100	74.876	Homo_sapiens
ENSAMXG00000018180	a1cf	100	72.459	ENSAPOG00000008259	a1cf	100	72.381	Acanthochromis_polyacanthus
ENSAMXG00000018180	a1cf	100	73.719	ENSAMEG00000000523	A1CF	100	74.050	Ailuropoda_melanoleuca
ENSAMXG00000018180	a1cf	100	74.919	ENSACIG00000008632	a1cf	100	75.041	Amphilophus_citrinellus
ENSAMXG00000018180	a1cf	100	74.351	ENSAOCG00000023744	a1cf	100	74.513	Amphiprion_ocellaris
ENSAMXG00000018180	a1cf	100	75.325	ENSAPEG00000009537	a1cf	100	75.487	Amphiprion_percula
ENSAMXG00000018180	a1cf	100	75.728	ENSATEG00000013720	a1cf	100	76.214	Anabas_testudineus
ENSAMXG00000018180	a1cf	100	75.537	ENSAPLG00000002964	A1CF	100	75.537	Anas_platyrhynchos
ENSAMXG00000018180	a1cf	100	71.240	ENSACAG00000015269	A1CF	100	71.240	Anolis_carolinensis
ENSAMXG00000018180	a1cf	100	73.554	ENSANAG00000019974	A1CF	100	73.388	Aotus_nancymaae
ENSAMXG00000018180	a1cf	100	72.123	ENSACLG00000017428	a1cf	100	73.906	Astatotilapia_calliptera
ENSAMXG00000018180	a1cf	100	73.884	ENSBTAG00000021195	A1CF	100	73.884	Bos_taurus
ENSAMXG00000018180	a1cf	100	75.041	ENSCJAG00000005045	A1CF	100	74.876	Callithrix_jacchus
ENSAMXG00000018180	a1cf	100	74.050	ENSCAFG00000015581	A1CF	100	74.380	Canis_familiaris
ENSAMXG00000018180	a1cf	100	74.050	ENSCAFG00020026421	A1CF	98	83.221	Canis_lupus_dingo
ENSAMXG00000018180	a1cf	100	74.876	ENSCHIG00000020411	A1CF	100	74.876	Capra_hircus
ENSAMXG00000018180	a1cf	93	77.757	ENSTSYG00000001755	A1CF	95	76.654	Carlito_syrichta
ENSAMXG00000018180	a1cf	100	79.868	ENSCAPG00000017386	A1CF	100	79.868	Cavia_aperea
ENSAMXG00000018180	a1cf	100	74.215	ENSCPOG00000009807	A1CF	100	74.050	Cavia_porcellus
ENSAMXG00000018180	a1cf	100	74.876	ENSCCAG00000018168	A1CF	100	74.711	Cebus_capucinus
ENSAMXG00000018180	a1cf	100	73.058	ENSCATG00000043715	A1CF	100	72.893	Cercocebus_atys
ENSAMXG00000018180	a1cf	100	74.545	ENSCLAG00000010424	A1CF	100	74.050	Chinchilla_lanigera
ENSAMXG00000018180	a1cf	100	74.711	ENSCSAG00000007032	A1CF	100	74.380	Chlorocebus_sabaeus
ENSAMXG00000018180	a1cf	93	76.654	ENSCHOG00000009089	A1CF	89	76.654	Choloepus_hoffmanni
ENSAMXG00000018180	a1cf	100	74.545	ENSCPBG00000026464	A1CF	100	74.545	Chrysemys_picta_bellii
ENSAMXG00000018180	a1cf	100	74.876	ENSCANG00000038032	A1CF	100	74.545	Colobus_angolensis_palliatus
ENSAMXG00000018180	a1cf	100	73.719	ENSCGRG00001017413	A1cf	100	73.719	Cricetulus_griseus_chok1gshd
ENSAMXG00000018180	a1cf	100	73.223	ENSCGRG00000017332	A1cf	100	73.388	Cricetulus_griseus_crigri
ENSAMXG00000018180	a1cf	100	75.698	ENSCSEG00000002361	a1cf	100	76.190	Cynoglossus_semilaevis
ENSAMXG00000018180	a1cf	100	73.625	ENSCVAG00000010520	a1cf	100	74.595	Cyprinodon_variegatus
ENSAMXG00000018180	a1cf	100	82.013	ENSDARG00000002968	a1cf	100	82.013	Danio_rerio
ENSAMXG00000018180	a1cf	100	74.050	ENSDNOG00000002829	A1CF	100	74.050	Dasypus_novemcinctus
ENSAMXG00000018180	a1cf	76	84.649	ENSETEG00000012527	A1CF	73	84.649	Echinops_telfairi
ENSAMXG00000018180	a1cf	100	75.537	ENSEASG00005012924	A1CF	100	75.537	Equus_asinus_asinus
ENSAMXG00000018180	a1cf	100	75.207	ENSECAG00000010424	A1CF	100	75.207	Equus_caballus
ENSAMXG00000018180	a1cf	82	69.392	ENSEEUG00000000013	A1CF	97	70.989	Erinaceus_europaeus
ENSAMXG00000018180	a1cf	100	80.858	ENSELUG00000003159	a1cf	100	80.858	Esox_lucius
ENSAMXG00000018180	a1cf	100	72.397	ENSFCAG00000011179	A1CF	100	73.223	Felis_catus
ENSAMXG00000018180	a1cf	100	75.041	ENSFALG00000013183	A1CF	100	75.041	Ficedula_albicollis
ENSAMXG00000018180	a1cf	100	72.893	ENSFDAG00000019371	A1CF	100	72.727	Fukomys_damarensis
ENSAMXG00000018180	a1cf	100	76.127	ENSFHEG00000019652	a1cf	100	77.129	Fundulus_heteroclitus
ENSAMXG00000018180	a1cf	100	76.000	ENSGMOG00000018943	a1cf	100	75.667	Gadus_morhua
ENSAMXG00000018180	a1cf	93	77.941	ENSGALG00000003765	A1CF	91	77.941	Gallus_gallus
ENSAMXG00000018180	a1cf	100	69.218	ENSGAFG00000014868	a1cf	100	69.218	Gambusia_affinis
ENSAMXG00000018180	a1cf	100	77.667	ENSGACG00000010241	a1cf	100	78.167	Gasterosteus_aculeatus
ENSAMXG00000018180	a1cf	93	77.206	ENSGAGG00000016508	A1CF	92	77.206	Gopherus_agassizii
ENSAMXG00000018180	a1cf	100	75.041	ENSGGOG00000009670	A1CF	100	74.876	Gorilla_gorilla
ENSAMXG00000018180	a1cf	100	75.081	ENSHBUG00000021959	a1cf	100	75.689	Haplochromis_burtoni
ENSAMXG00000018180	a1cf	100	73.719	ENSHGLG00000008955	A1CF	100	73.719	Heterocephalus_glaber_female
ENSAMXG00000018180	a1cf	100	73.058	ENSHGLG00100000518	A1CF	100	73.058	Heterocephalus_glaber_male
ENSAMXG00000018180	a1cf	100	67.097	ENSHCOG00000017669	a1cf	100	69.677	Hippocampus_comes
ENSAMXG00000018180	a1cf	88	87.546	ENSIPUG00000010367	a1cf	95	88.368	Ictalurus_punctatus
ENSAMXG00000018180	a1cf	100	75.487	ENSKMAG00000006568	a1cf	100	76.623	Kryptolebias_marmoratus
ENSAMXG00000018180	a1cf	99	76.052	ENSLBEG00000020994	a1cf	98	76.710	Labrus_bergylta
ENSAMXG00000018180	a1cf	100	76.073	ENSLACG00000008061	A1CF	100	76.073	Latimeria_chalumnae
ENSAMXG00000018180	a1cf	100	81.518	ENSLOCG00000006302	a1cf	100	81.518	Lepisosteus_oculatus
ENSAMXG00000018180	a1cf	100	74.545	ENSLAFG00000015462	A1CF	100	75.372	Loxodonta_africana
ENSAMXG00000018180	a1cf	100	73.388	ENSMFAG00000035948	A1CF	100	73.223	Macaca_fascicularis
ENSAMXG00000018180	a1cf	100	73.388	ENSMMUG00000007077	A1CF	100	73.223	Macaca_mulatta
ENSAMXG00000018180	a1cf	100	73.058	ENSMNEG00000031454	A1CF	100	72.893	Macaca_nemestrina
ENSAMXG00000018180	a1cf	100	74.380	ENSMLEG00000037223	A1CF	100	74.215	Mandrillus_leucophaeus
ENSAMXG00000018180	a1cf	100	74.146	ENSMAMG00000010402	a1cf	100	74.634	Mastacembelus_armatus
ENSAMXG00000018180	a1cf	100	76.151	ENSMZEG00005013245	a1cf	100	76.151	Maylandia_zebra
ENSAMXG00000018180	a1cf	100	74.752	ENSMGAG00000001507	A1CF	100	74.752	Meleagris_gallopavo
ENSAMXG00000018180	a1cf	100	73.223	ENSMAUG00000007422	A1cf	100	73.388	Mesocricetus_auratus
ENSAMXG00000018180	a1cf	100	72.397	ENSMICG00000003377	A1CF	100	73.388	Microcebus_murinus
ENSAMXG00000018180	a1cf	100	74.711	ENSMOCG00000021536	A1cf	100	74.545	Microtus_ochrogaster
ENSAMXG00000018180	a1cf	100	70.530	ENSMMOG00000009422	a1cf	100	69.637	Mola_mola
ENSAMXG00000018180	a1cf	88	73.694	ENSMODG00000016478	A1CF	97	74.859	Monodelphis_domestica
ENSAMXG00000018180	a1cf	100	70.888	ENSMALG00000012992	a1cf	100	70.888	Monopterus_albus
ENSAMXG00000018180	a1cf	100	73.223	MGP_CAROLIEiJ_G0022873	A1cf	100	72.893	Mus_caroli
ENSAMXG00000018180	a1cf	100	73.223	ENSMUSG00000052595	A1cf	99	82.886	Mus_musculus
ENSAMXG00000018180	a1cf	100	72.727	MGP_PahariEiJ_G0014366	A1cf	100	72.397	Mus_pahari
ENSAMXG00000018180	a1cf	100	73.223	MGP_SPRETEiJ_G0023792	A1cf	100	72.893	Mus_spretus
ENSAMXG00000018180	a1cf	100	68.760	ENSMPUG00000016971	A1CF	100	69.091	Mustela_putorius_furo
ENSAMXG00000018180	a1cf	100	74.215	ENSMLUG00000016071	A1CF	100	74.380	Myotis_lucifugus
ENSAMXG00000018180	a1cf	100	74.050	ENSNGAG00000015136	A1cf	100	73.884	Nannospalax_galili
ENSAMXG00000018180	a1cf	100	74.919	ENSNBRG00000001712	a1cf	100	75.527	Neolamprologus_brichardi
ENSAMXG00000018180	a1cf	100	75.372	ENSNLEG00000012028	A1CF	100	75.041	Nomascus_leucogenys
ENSAMXG00000018180	a1cf	93	76.471	ENSMEUG00000015909	A1CF	95	76.471	Notamacropus_eugenii
ENSAMXG00000018180	a1cf	87	66.352	ENSOPRG00000010667	A1CF	97	66.229	Ochotona_princeps
ENSAMXG00000018180	a1cf	100	75.243	ENSONIG00000019105	a1cf	100	75.365	Oreochromis_niloticus
ENSAMXG00000018180	a1cf	77	72.824	ENSOANG00000007360	A1CF	99	72.824	Ornithorhynchus_anatinus
ENSAMXG00000018180	a1cf	100	73.223	ENSOCUG00000011587	A1CF	100	73.388	Oryctolagus_cuniculus
ENSAMXG00000018180	a1cf	100	72.934	ENSORLG00000013342	a1cf	100	72.934	Oryzias_latipes
ENSAMXG00000018180	a1cf	100	74.110	ENSORLG00020000586	a1cf	100	74.757	Oryzias_latipes_hni
ENSAMXG00000018180	a1cf	100	74.110	ENSORLG00015018569	a1cf	100	74.757	Oryzias_latipes_hsok
ENSAMXG00000018180	a1cf	100	74.351	ENSOMEG00000013531	a1cf	100	74.309	Oryzias_melastigma
ENSAMXG00000018180	a1cf	100	72.562	ENSOGAG00000012884	A1CF	100	73.719	Otolemur_garnettii
ENSAMXG00000018180	a1cf	100	75.041	ENSOARG00000013695	A1CF	100	75.041	Ovis_aries
ENSAMXG00000018180	a1cf	93	78.125	ENSPPAG00000028115	A1CF	99	77.510	Pan_paniscus
ENSAMXG00000018180	a1cf	100	74.050	ENSPPRG00000012180	A1CF	100	74.876	Panthera_pardus
ENSAMXG00000018180	a1cf	100	74.050	ENSPTIG00000021223	A1CF	100	74.876	Panthera_tigris_altaica
ENSAMXG00000018180	a1cf	100	74.876	ENSPTRG00000002508	A1CF	100	74.711	Pan_troglodytes
ENSAMXG00000018180	a1cf	100	73.388	ENSPANG00000021988	A1CF	100	73.223	Papio_anubis
ENSAMXG00000018180	a1cf	100	81.683	ENSPKIG00000025176	a1cf	100	81.353	Paramormyrops_kingsleyae
ENSAMXG00000018180	a1cf	100	73.884	ENSPSIG00000010318	A1CF	100	73.884	Pelodiscus_sinensis
ENSAMXG00000018180	a1cf	98	63.591	ENSPMGG00000013359	a1cf	99	64.441	Periophthalmus_magnuspinnatus
ENSAMXG00000018180	a1cf	100	74.050	ENSPEMG00000015021	A1cf	100	73.884	Peromyscus_maniculatus_bairdii
ENSAMXG00000018180	a1cf	100	72.893	ENSPCIG00000002175	A1CF	100	73.719	Phascolarctos_cinereus
ENSAMXG00000018180	a1cf	100	75.728	ENSPFOG00000006683	a1cf	100	76.699	Poecilia_formosa
ENSAMXG00000018180	a1cf	100	75.566	ENSPFOG00000007437	-	100	76.537	Poecilia_formosa
ENSAMXG00000018180	a1cf	100	74.595	ENSPLAG00000001210	-	100	75.566	Poecilia_latipinna
ENSAMXG00000018180	a1cf	100	74.595	ENSPLAG00000000026	a1cf	100	75.566	Poecilia_latipinna
ENSAMXG00000018180	a1cf	100	68.182	ENSPMEG00000015529	-	100	69.318	Poecilia_mexicana
ENSAMXG00000018180	a1cf	100	67.045	ENSPMEG00000000921	a1cf	100	68.182	Poecilia_mexicana
ENSAMXG00000018180	a1cf	100	75.566	ENSPREG00000016298	a1cf	100	76.537	Poecilia_reticulata
ENSAMXG00000018180	a1cf	100	74.215	ENSPPYG00000002819	A1CF	100	73.884	Pongo_abelii
ENSAMXG00000018180	a1cf	83	62.319	ENSPCAG00000006463	A1CF	70	71.429	Procavia_capensis
ENSAMXG00000018180	a1cf	100	73.388	ENSPCOG00000024172	A1CF	100	74.380	Propithecus_coquereli
ENSAMXG00000018180	a1cf	100	76.214	ENSPNYG00000017944	a1cf	100	76.823	Pundamilia_nyererei
ENSAMXG00000018180	a1cf	100	87.954	ENSPNAG00000007704	a1cf	100	87.459	Pygocentrus_nattereri
ENSAMXG00000018180	a1cf	100	71.736	ENSRNOG00000033195	A1cf	100	71.405	Rattus_norvegicus
ENSAMXG00000018180	a1cf	100	73.232	ENSRBIG00000042892	A1CF	100	76.967	Rhinopithecus_bieti
ENSAMXG00000018180	a1cf	100	74.711	ENSRROG00000041398	A1CF	100	74.545	Rhinopithecus_roxellana
ENSAMXG00000018180	a1cf	100	75.537	ENSSBOG00000021930	A1CF	100	79.079	Saimiri_boliviensis_boliviensis
ENSAMXG00000018180	a1cf	100	75.207	ENSSHAG00000005096	A1CF	100	75.207	Sarcophilus_harrisii
ENSAMXG00000018180	a1cf	100	81.818	ENSSFOG00015011774	a1cf	100	82.314	Scleropages_formosus
ENSAMXG00000018180	a1cf	100	75.566	ENSSMAG00000013271	a1cf	100	76.214	Scophthalmus_maximus
ENSAMXG00000018180	a1cf	100	77.250	ENSSDUG00000013930	a1cf	100	76.885	Seriola_dumerili
ENSAMXG00000018180	a1cf	100	70.473	ENSSLDG00000004290	a1cf	100	70.147	Seriola_lalandi_dorsalis
ENSAMXG00000018180	a1cf	93	68.199	ENSSARG00000005940	A1CF	90	68.199	Sorex_araneus
ENSAMXG00000018180	a1cf	93	76.147	ENSSPUG00000006797	A1CF	89	76.147	Sphenodon_punctatus
ENSAMXG00000018180	a1cf	100	76.033	ENSSSCG00000010431	A1CF	100	76.033	Sus_scrofa
ENSAMXG00000018180	a1cf	100	76.364	ENSTGUG00000005090	A1CF	100	76.198	Taeniopygia_guttata
ENSAMXG00000018180	a1cf	100	73.786	ENSTRUG00000001982	a1cf	100	73.625	Takifugu_rubripes
ENSAMXG00000018180	a1cf	100	73.065	ENSTNIG00000003580	a1cf	100	73.065	Tetraodon_nigroviridis
ENSAMXG00000018180	a1cf	93	72.426	ENSTTRG00000013190	A1CF	89	72.426	Tursiops_truncatus
ENSAMXG00000018180	a1cf	100	72.727	ENSUAMG00000020065	A1CF	100	72.727	Ursus_americanus
ENSAMXG00000018180	a1cf	100	73.884	ENSUMAG00000011162	A1CF	100	73.884	Ursus_maritimus
ENSAMXG00000018180	a1cf	90	75.522	ENSVPAG00000006130	A1CF	86	75.522	Vicugna_pacos
ENSAMXG00000018180	a1cf	100	73.223	ENSVVUG00000002504	A1CF	100	73.223	Vulpes_vulpes
ENSAMXG00000018180	a1cf	100	69.142	ENSXETG00000006611	a1cf	100	69.307	Xenopus_tropicalis
ENSAMXG00000018180	a1cf	100	76.221	ENSXCOG00000003302	a1cf	100	76.221	Xiphophorus_couchianus
ENSAMXG00000018180	a1cf	100	77.362	ENSXMAG00000016703	a1cf	100	77.362	Xiphophorus_maculatus