EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018301 (Gene tree)
Gene ID: 103036099
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 22954 bases
Position: chr3:33625172-33648125
Accession: 103036099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018854	XRN_N	PF03159.18	1e-100	1	1
ENSAMXP00000040034	XRN_N	PF03159.18	1.1e-100	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031706	-	3472	-	ENSAMXP00000040034	999 (aa)	-	-
ENSAMXT00000018854	-	3370	XM_007255447	ENSAMXP00000018854	965 (aa)	XP_007255509	W5LG92

Gene Model

Click here to download ENSAMXG00000018301's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018301's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018301	xrn2	59	47.260	ENSAMXG00000019370	xrn1	95	53.279

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018301	xrn2	100	71.617	ENSG00000088930	XRN2	100	71.617	Homo_sapiens
ENSAMXG00000018301	xrn2	97	81.568	ENSAPOG00000009818	xrn2	100	80.182	Acanthochromis_polyacanthus
ENSAMXG00000018301	xrn2	100	71.122	ENSAMEG00000012581	XRN2	100	71.122	Ailuropoda_melanoleuca
ENSAMXG00000018301	xrn2	91	79.101	ENSACIG00000015047	xrn2	95	84.762	Amphilophus_citrinellus
ENSAMXG00000018301	xrn2	97	82.609	ENSAOCG00000023632	xrn2	100	80.972	Amphiprion_ocellaris
ENSAMXG00000018301	xrn2	97	82.521	ENSAPEG00000014871	xrn2	100	80.890	Amphiprion_percula
ENSAMXG00000018301	xrn2	95	82.974	ENSATEG00000001273	xrn2	98	83.070	Anabas_testudineus
ENSAMXG00000018301	xrn2	98	71.233	ENSAPLG00000013869	XRN2	100	71.233	Anas_platyrhynchos
ENSAMXG00000018301	xrn2	100	70.234	ENSACAG00000005565	XRN2	100	70.234	Anolis_carolinensis
ENSAMXG00000018301	xrn2	100	71.254	ENSANAG00000020126	XRN2	100	71.254	Aotus_nancymaae
ENSAMXG00000018301	xrn2	92	81.285	ENSACLG00000010522	xrn2	98	81.285	Astatotilapia_calliptera
ENSAMXG00000018301	xrn2	100	70.498	ENSBTAG00000011304	XRN2	100	70.498	Bos_taurus
ENSAMXG00000018301	xrn2	86	54.007	WBGene00006964	xrn-2	97	50.615	Caenorhabditis_elegans
ENSAMXG00000018301	xrn2	100	71.254	ENSCJAG00000005611	XRN2	100	71.254	Callithrix_jacchus
ENSAMXG00000018301	xrn2	100	71.211	ENSCAFG00000005185	XRN2	100	71.211	Canis_familiaris
ENSAMXG00000018301	xrn2	100	71.211	ENSCAFG00020027479	XRN2	100	71.211	Canis_lupus_dingo
ENSAMXG00000018301	xrn2	100	70.600	ENSCHIG00000006921	XRN2	100	70.600	Capra_hircus
ENSAMXG00000018301	xrn2	100	70.570	ENSTSYG00000008315	XRN2	100	70.570	Carlito_syrichta
ENSAMXG00000018301	xrn2	97	60.482	ENSCAPG00000010773	XRN2	99	60.063	Cavia_aperea
ENSAMXG00000018301	xrn2	100	71.356	ENSCPOG00000009407	XRN2	100	71.356	Cavia_porcellus
ENSAMXG00000018301	xrn2	100	71.414	ENSCATG00000040350	XRN2	100	71.414	Cercocebus_atys
ENSAMXG00000018301	xrn2	100	71.560	ENSCLAG00000013419	XRN2	100	71.560	Chinchilla_lanigera
ENSAMXG00000018301	xrn2	100	71.414	ENSCSAG00000011094	XRN2	100	71.414	Chlorocebus_sabaeus
ENSAMXG00000018301	xrn2	67	89.247	ENSCHOG00000013404	XRN2	69	89.247	Choloepus_hoffmanni
ENSAMXG00000018301	xrn2	100	71.910	ENSCPBG00000023533	XRN2	100	72.069	Chrysemys_picta_bellii
ENSAMXG00000018301	xrn2	86	60.213	ENSCING00000022336	-	100	60.520	Ciona_intestinalis
ENSAMXG00000018301	xrn2	85	69.767	ENSCSAVG00000011217	-	96	70.602	Ciona_savignyi
ENSAMXG00000018301	xrn2	100	71.414	ENSCANG00000040240	XRN2	100	71.414	Colobus_angolensis_palliatus
ENSAMXG00000018301	xrn2	98	72.188	ENSCGRG00001010676	Xrn2	100	72.292	Cricetulus_griseus_chok1gshd
ENSAMXG00000018301	xrn2	97	70.755	ENSCGRG00000006378	Xrn2	99	70.860	Cricetulus_griseus_crigri
ENSAMXG00000018301	xrn2	54	77.159	ENSCSEG00000005628	xrn2	100	78.503	Cynoglossus_semilaevis
ENSAMXG00000018301	xrn2	92	79.731	ENSCVAG00000018999	xrn2	98	87.023	Cyprinodon_variegatus
ENSAMXG00000018301	xrn2	100	83.248	ENSDARG00000101900	xrn2	96	90.458	Danio_rerio
ENSAMXG00000018301	xrn2	100	71.617	ENSDNOG00000001895	XRN2	100	71.617	Dasypus_novemcinctus
ENSAMXG00000018301	xrn2	100	70.397	ENSDORG00000005434	Xrn2	100	70.397	Dipodomys_ordii
ENSAMXG00000018301	xrn2	86	54.994	FBgn0031868	Rat1	89	54.854	Drosophila_melanogaster
ENSAMXG00000018301	xrn2	92	81.509	ENSETEG00000001740	XRN2	93	81.509	Echinops_telfairi
ENSAMXG00000018301	xrn2	84	71.046	ENSEBUG00000016136	xrn2	100	71.046	Eptatretus_burgeri
ENSAMXG00000018301	xrn2	100	71.020	ENSEASG00005002484	XRN2	100	71.020	Equus_asinus_asinus
ENSAMXG00000018301	xrn2	94	88.462	ENSECAG00000018988	XRN2	96	88.462	Equus_caballus
ENSAMXG00000018301	xrn2	67	92.000	ENSEEUG00000009265	XRN2	67	92.000	Erinaceus_europaeus
ENSAMXG00000018301	xrn2	100	80.603	ENSELUG00000000552	xrn2	100	81.508	Esox_lucius
ENSAMXG00000018301	xrn2	100	71.050	ENSFCAG00000007970	XRN2	100	71.050	Felis_catus
ENSAMXG00000018301	xrn2	100	71.238	ENSFALG00000004508	XRN2	100	71.238	Ficedula_albicollis
ENSAMXG00000018301	xrn2	100	71.254	ENSFDAG00000016311	XRN2	100	71.254	Fukomys_damarensis
ENSAMXG00000018301	xrn2	54	79.732	ENSFHEG00000013039	xrn2	98	79.732	Fundulus_heteroclitus
ENSAMXG00000018301	xrn2	86	81.993	ENSGMOG00000013436	xrn2	100	81.993	Gadus_morhua
ENSAMXG00000018301	xrn2	100	71.223	ENSGALG00000008372	XRN2	100	71.223	Gallus_gallus
ENSAMXG00000018301	xrn2	90	82.699	ENSGAFG00000014284	xrn2	98	82.699	Gambusia_affinis
ENSAMXG00000018301	xrn2	87	81.310	ENSGACG00000011870	xrn2	96	86.372	Gasterosteus_aculeatus
ENSAMXG00000018301	xrn2	100	71.910	ENSGAGG00000004884	XRN2	100	72.114	Gopherus_agassizii
ENSAMXG00000018301	xrn2	100	71.414	ENSGGOG00000013738	XRN2	100	71.414	Gorilla_gorilla
ENSAMXG00000018301	xrn2	54	83.748	ENSHBUG00000005077	xrn2	94	83.748	Haplochromis_burtoni
ENSAMXG00000018301	xrn2	100	70.540	ENSHGLG00000014831	XRN2	100	70.540	Heterocephalus_glaber_female
ENSAMXG00000018301	xrn2	100	70.540	ENSHGLG00100013130	XRN2	100	70.540	Heterocephalus_glaber_male
ENSAMXG00000018301	xrn2	99	76.004	ENSHCOG00000011994	xrn2	99	76.884	Hippocampus_comes
ENSAMXG00000018301	xrn2	100	86.921	ENSIPUG00000006639	xrn2	100	86.921	Ictalurus_punctatus
ENSAMXG00000018301	xrn2	100	71.356	ENSSTOG00000000589	XRN2	100	71.356	Ictidomys_tridecemlineatus
ENSAMXG00000018301	xrn2	100	71.648	ENSJJAG00000022128	Xrn2	100	71.648	Jaculus_jaculus
ENSAMXG00000018301	xrn2	54	86.398	ENSLBEG00000010041	xrn2	100	86.398	Labrus_bergylta
ENSAMXG00000018301	xrn2	94	71.337	ENSLACG00000008307	XRN2	97	76.478	Latimeria_chalumnae
ENSAMXG00000018301	xrn2	99	76.181	ENSLOCG00000016874	xrn2	93	83.706	Lepisosteus_oculatus
ENSAMXG00000018301	xrn2	100	71.152	ENSLAFG00000014624	XRN2	100	71.152	Loxodonta_africana
ENSAMXG00000018301	xrn2	100	71.414	ENSMFAG00000038122	XRN2	100	71.414	Macaca_fascicularis
ENSAMXG00000018301	xrn2	100	71.414	ENSMMUG00000011405	XRN2	100	71.414	Macaca_mulatta
ENSAMXG00000018301	xrn2	100	71.312	ENSMNEG00000040626	XRN2	100	71.312	Macaca_nemestrina
ENSAMXG00000018301	xrn2	100	71.312	ENSMLEG00000041897	XRN2	100	71.312	Mandrillus_leucophaeus
ENSAMXG00000018301	xrn2	95	82.703	ENSMAMG00000008633	xrn2	97	82.650	Mastacembelus_armatus
ENSAMXG00000018301	xrn2	92	83.315	ENSMZEG00005022362	xrn2	98	83.315	Maylandia_zebra
ENSAMXG00000018301	xrn2	98	71.668	ENSMGAG00000003196	XRN2	97	71.668	Meleagris_gallopavo
ENSAMXG00000018301	xrn2	100	72.069	ENSMAUG00000021842	Xrn2	100	72.069	Mesocricetus_auratus
ENSAMXG00000018301	xrn2	100	70.905	ENSMICG00000008126	XRN2	100	70.905	Microcebus_murinus
ENSAMXG00000018301	xrn2	100	71.443	ENSMOCG00000012588	Xrn2	100	71.648	Microtus_ochrogaster
ENSAMXG00000018301	xrn2	92	82.379	ENSMMOG00000017576	xrn2	98	82.287	Mola_mola
ENSAMXG00000018301	xrn2	100	71.648	ENSMODG00000006163	XRN2	100	71.648	Monodelphis_domestica
ENSAMXG00000018301	xrn2	94	83.976	ENSMALG00000011355	xrn2	95	87.548	Monopterus_albus
ENSAMXG00000018301	xrn2	100	71.677	MGP_CAROLIEiJ_G0024400	Xrn2	100	71.677	Mus_caroli
ENSAMXG00000018301	xrn2	100	71.779	ENSMUSG00000027433	Xrn2	100	71.779	Mus_musculus
ENSAMXG00000018301	xrn2	100	71.677	MGP_PahariEiJ_G0025843	Xrn2	100	71.677	Mus_pahari
ENSAMXG00000018301	xrn2	100	71.779	MGP_SPRETEiJ_G0025318	Xrn2	100	71.779	Mus_spretus
ENSAMXG00000018301	xrn2	100	69.840	ENSMPUG00000001198	XRN2	93	69.840	Mustela_putorius_furo
ENSAMXG00000018301	xrn2	100	71.429	ENSMLUG00000001536	XRN2	100	71.429	Myotis_lucifugus
ENSAMXG00000018301	xrn2	100	71.764	ENSNGAG00000018138	Xrn2	100	71.764	Nannospalax_galili
ENSAMXG00000018301	xrn2	92	83.202	ENSNBRG00000008062	xrn2	98	83.202	Neolamprologus_brichardi
ENSAMXG00000018301	xrn2	100	71.414	ENSNLEG00000009991	XRN2	100	71.414	Nomascus_leucogenys
ENSAMXG00000018301	xrn2	65	86.667	ENSMEUG00000008622	-	67	86.667	Notamacropus_eugenii
ENSAMXG00000018301	xrn2	67	73.684	ENSOPRG00000001397	-	63	73.684	Ochotona_princeps
ENSAMXG00000018301	xrn2	100	71.356	ENSODEG00000010745	-	100	71.356	Octodon_degus
ENSAMXG00000018301	xrn2	97	66.102	ENSODEG00000000860	-	98	66.169	Octodon_degus
ENSAMXG00000018301	xrn2	100	78.636	ENSONIG00000018720	xrn2	100	78.252	Oreochromis_niloticus
ENSAMXG00000018301	xrn2	100	71.034	ENSOANG00000015673	XRN2	100	71.034	Ornithorhynchus_anatinus
ENSAMXG00000018301	xrn2	100	71.414	ENSOCUG00000013468	XRN2	100	71.414	Oryctolagus_cuniculus
ENSAMXG00000018301	xrn2	98	80.352	ENSORLG00000017213	xrn2	96	84.120	Oryzias_latipes
ENSAMXG00000018301	xrn2	98	80.062	ENSORLG00020001824	xrn2	100	79.391	Oryzias_latipes_hni
ENSAMXG00000018301	xrn2	98	79.709	ENSORLG00015019747	xrn2	100	79.044	Oryzias_latipes_hsok
ENSAMXG00000018301	xrn2	100	76.517	ENSOMEG00000019820	xrn2	100	78.283	Oryzias_melastigma
ENSAMXG00000018301	xrn2	100	71.560	ENSOGAG00000001068	XRN2	100	71.560	Otolemur_garnettii
ENSAMXG00000018301	xrn2	97	70.010	ENSOARG00000004443	XRN2	99	70.010	Ovis_aries
ENSAMXG00000018301	xrn2	100	71.414	ENSPPAG00000033549	XRN2	100	71.414	Pan_paniscus
ENSAMXG00000018301	xrn2	100	71.050	ENSPPRG00000008732	XRN2	100	71.050	Panthera_pardus
ENSAMXG00000018301	xrn2	97	70.576	ENSPTIG00000015683	XRN2	97	70.576	Panthera_tigris_altaica
ENSAMXG00000018301	xrn2	100	71.414	ENSPTRG00000013308	XRN2	100	71.414	Pan_troglodytes
ENSAMXG00000018301	xrn2	100	71.414	ENSPANG00000018088	XRN2	100	71.414	Papio_anubis
ENSAMXG00000018301	xrn2	100	79.532	ENSPKIG00000016889	xrn2	100	79.756	Paramormyrops_kingsleyae
ENSAMXG00000018301	xrn2	80	76.765	ENSPSIG00000014666	XRN2	100	76.765	Pelodiscus_sinensis
ENSAMXG00000018301	xrn2	100	71.677	ENSPEMG00000000111	Xrn2	100	71.677	Peromyscus_maniculatus_bairdii
ENSAMXG00000018301	xrn2	100	78.119	ENSPFOG00000004182	xrn2	99	78.345	Poecilia_formosa
ENSAMXG00000018301	xrn2	90	82.814	ENSPLAG00000007351	xrn2	96	82.814	Poecilia_latipinna
ENSAMXG00000018301	xrn2	94	77.489	ENSPMEG00000011798	xrn2	99	77.730	Poecilia_mexicana
ENSAMXG00000018301	xrn2	92	82.147	ENSPREG00000012452	xrn2	99	81.444	Poecilia_reticulata
ENSAMXG00000018301	xrn2	100	71.109	ENSPPYG00000010755	XRN2	100	71.109	Pongo_abelii
ENSAMXG00000018301	xrn2	100	67.854	ENSPCAG00000011191	XRN2	100	67.788	Procavia_capensis
ENSAMXG00000018301	xrn2	100	65.615	ENSPCOG00000016468	XRN2	100	65.615	Propithecus_coquereli
ENSAMXG00000018301	xrn2	93	66.489	ENSPVAG00000004596	XRN2	93	66.489	Pteropus_vampyrus
ENSAMXG00000018301	xrn2	92	81.285	ENSPNYG00000001765	xrn2	98	81.285	Pundamilia_nyererei
ENSAMXG00000018301	xrn2	100	91.255	ENSPNAG00000010956	xrn2	99	91.255	Pygocentrus_nattereri
ENSAMXG00000018301	xrn2	100	71.808	ENSRNOG00000011785	Xrn2	100	71.808	Rattus_norvegicus
ENSAMXG00000018301	xrn2	86	76.951	ENSRBIG00000036193	XRN2	100	76.951	Rhinopithecus_bieti
ENSAMXG00000018301	xrn2	100	71.414	ENSRROG00000044400	XRN2	90	71.414	Rhinopithecus_roxellana
ENSAMXG00000018301	xrn2	68	51.693	YOR048C	RAT1	65	53.623	Saccharomyces_cerevisiae
ENSAMXG00000018301	xrn2	100	71.356	ENSSBOG00000021014	XRN2	100	71.356	Saimiri_boliviensis_boliviensis
ENSAMXG00000018301	xrn2	100	81.045	ENSSFOG00015001091	xrn2	100	81.045	Scleropages_formosus
ENSAMXG00000018301	xrn2	92	82.774	ENSSMAG00000007834	xrn2	100	78.392	Scophthalmus_maximus
ENSAMXG00000018301	xrn2	96	80.344	ENSSDUG00000012802	xrn2	99	83.183	Seriola_dumerili
ENSAMXG00000018301	xrn2	93	85.128	ENSSLDG00000021273	xrn2	100	85.128	Seriola_lalandi_dorsalis
ENSAMXG00000018301	xrn2	69	92.000	ENSSARG00000005859	-	70	92.000	Sorex_araneus
ENSAMXG00000018301	xrn2	98	70.011	ENSSPUG00000005485	XRN2	95	70.011	Sphenodon_punctatus
ENSAMXG00000018301	xrn2	100	79.234	ENSSPAG00000016027	xrn2	99	80.386	Stegastes_partitus
ENSAMXG00000018301	xrn2	100	70.133	ENSSSCG00000007109	XRN2	100	70.133	Sus_scrofa
ENSAMXG00000018301	xrn2	100	69.765	ENSTGUG00000007535	XRN2	100	69.765	Taeniopygia_guttata
ENSAMXG00000018301	xrn2	100	76.471	ENSTRUG00000015489	xrn2	100	77.268	Takifugu_rubripes
ENSAMXG00000018301	xrn2	100	75.455	ENSTNIG00000010712	xrn2	100	75.455	Tetraodon_nigroviridis
ENSAMXG00000018301	xrn2	100	70.642	ENSTBEG00000004119	XRN2	100	70.846	Tupaia_belangeri
ENSAMXG00000018301	xrn2	93	78.521	ENSTTRG00000009087	XRN2	93	78.521	Tursiops_truncatus
ENSAMXG00000018301	xrn2	100	71.122	ENSUAMG00000024634	XRN2	100	71.122	Ursus_americanus
ENSAMXG00000018301	xrn2	97	70.471	ENSUMAG00000004012	XRN2	95	70.471	Ursus_maritimus
ENSAMXG00000018301	xrn2	82	85.113	ENSVPAG00000010694	XRN2	85	85.113	Vicugna_pacos
ENSAMXG00000018301	xrn2	100	71.254	ENSVVUG00000012178	XRN2	100	71.254	Vulpes_vulpes
ENSAMXG00000018301	xrn2	100	71.811	ENSXETG00000023501	xrn2	100	71.811	Xenopus_tropicalis
ENSAMXG00000018301	xrn2	100	78.323	ENSXMAG00000000242	xrn2	92	86.375	Xiphophorus_maculatus