EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000018334 (Gene tree)
Gene ID: 103034616
Gene Symbol: crnkl1
Alias: zgc:55327
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 9317 bases
Position: chr3:33434902-33444218
Accession: 103034616
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000018899	HAT	PF02184.16	8.8e-37	1	2
ENSAMXP00000018899	HAT	PF02184.16	8.8e-37	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000018899	-	4323	XM_007255443	ENSAMXP00000018899	742 (aa)	XP_007255505	W5LGD7

Gene Model

Click here to download ENSAMXG00000018334's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018334's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018334	crnkl1	92	86.131	ENSG00000101343	CRNKL1	97	87.349	Homo_sapiens
ENSAMXG00000018334	crnkl1	99	85.395	ENSAPOG00000009705	crnkl1	96	91.729	Acanthochromis_polyacanthus
ENSAMXG00000018334	crnkl1	92	86.029	ENSAMEG00000000270	CRNKL1	80	88.102	Ailuropoda_melanoleuca
ENSAMXG00000018334	crnkl1	94	87.607	ENSACIG00000015267	crnkl1	88	90.977	Amphilophus_citrinellus
ENSAMXG00000018334	crnkl1	93	90.552	ENSAOCG00000021964	crnkl1	88	92.782	Amphiprion_ocellaris
ENSAMXG00000018334	crnkl1	93	91.001	ENSAPEG00000015041	crnkl1	88	92.782	Amphiprion_percula
ENSAMXG00000018334	crnkl1	96	86.732	ENSATEG00000001068	crnkl1	88	91.892	Anabas_testudineus
ENSAMXG00000018334	crnkl1	90	85.949	ENSAPLG00000013105	CRNKL1	97	85.865	Anas_platyrhynchos
ENSAMXG00000018334	crnkl1	91	88.183	ENSACAG00000005284	CRNKL1	97	89.023	Anolis_carolinensis
ENSAMXG00000018334	crnkl1	85	86.984	ENSANAG00000024889	CRNKL1	99	86.984	Aotus_nancymaae
ENSAMXG00000018334	crnkl1	93	89.685	ENSACLG00000010813	crnkl1	88	92.932	Astatotilapia_calliptera
ENSAMXG00000018334	crnkl1	93	86.337	ENSBTAG00000008472	CRNKL1	96	88.102	Bos_taurus
ENSAMXG00000018334	crnkl1	86	63.453	WBGene00019762	M03F8.3	92	61.693	Caenorhabditis_elegans
ENSAMXG00000018334	crnkl1	92	86.277	ENSCJAG00000005393	CRNKL1	97	87.500	Callithrix_jacchus
ENSAMXG00000018334	crnkl1	92	86.029	ENSCAFG00000005333	CRNKL1	91	88.102	Canis_familiaris
ENSAMXG00000018334	crnkl1	92	86.131	ENSCAFG00020027488	CRNKL1	97	88.102	Canis_lupus_dingo
ENSAMXG00000018334	crnkl1	93	85.465	ENSCHIG00000013171	CRNKL1	96	87.349	Capra_hircus
ENSAMXG00000018334	crnkl1	92	86.131	ENSTSYG00000004197	CRNKL1	97	87.349	Carlito_syrichta
ENSAMXG00000018334	crnkl1	83	83.333	ENSCAPG00000010501	CRNKL1	96	85.427	Cavia_aperea
ENSAMXG00000018334	crnkl1	92	84.526	ENSCPOG00000004418	CRNKL1	97	86.446	Cavia_porcellus
ENSAMXG00000018334	crnkl1	92	86.277	ENSCCAG00000027037	CRNKL1	97	87.500	Cebus_capucinus
ENSAMXG00000018334	crnkl1	92	85.985	ENSCATG00000034247	CRNKL1	97	87.199	Cercocebus_atys
ENSAMXG00000018334	crnkl1	92	85.109	ENSCLAG00000013859	CRNKL1	97	87.048	Chinchilla_lanigera
ENSAMXG00000018334	crnkl1	92	85.985	ENSCSAG00000011434	CRNKL1	97	87.199	Chlorocebus_sabaeus
ENSAMXG00000018334	crnkl1	92	85.294	ENSCHOG00000006371	CRNKL1	81	87.349	Choloepus_hoffmanni
ENSAMXG00000018334	crnkl1	94	87.500	ENSCPBG00000023501	CRNKL1	97	89.925	Chrysemys_picta_bellii
ENSAMXG00000018334	crnkl1	89	68.524	ENSCING00000002709	-	97	68.524	Ciona_intestinalis
ENSAMXG00000018334	crnkl1	92	85.985	ENSCANG00000038789	CRNKL1	97	87.199	Colobus_angolensis_palliatus
ENSAMXG00000018334	crnkl1	93	85.298	ENSCGRG00001001115	-	96	87.349	Cricetulus_griseus_chok1gshd
ENSAMXG00000018334	crnkl1	93	85.298	ENSCGRG00001000687	-	96	87.349	Cricetulus_griseus_chok1gshd
ENSAMXG00000018334	crnkl1	93	85.298	ENSCGRG00000007854	Crnkl1	96	87.349	Cricetulus_griseus_crigri
ENSAMXG00000018334	crnkl1	91	89.766	ENSCSEG00000005594	crnkl1	93	84.239	Cynoglossus_semilaevis
ENSAMXG00000018334	crnkl1	90	91.604	ENSCVAG00000015172	crnkl1	90	91.579	Cyprinodon_variegatus
ENSAMXG00000018334	crnkl1	89	92.609	ENSDARG00000007901	crnkl1	88	92.632	Danio_rerio
ENSAMXG00000018334	crnkl1	93	86.087	ENSDNOG00000016226	CRNKL1	92	87.801	Dasypus_novemcinctus
ENSAMXG00000018334	crnkl1	90	79.491	ENSDORG00000030174	-	98	79.549	Dipodomys_ordii
ENSAMXG00000018334	crnkl1	92	83.502	ENSDORG00000000394	-	97	85.373	Dipodomys_ordii
ENSAMXG00000018334	crnkl1	90	80.180	ENSDORG00000023724	-	98	80.241	Dipodomys_ordii
ENSAMXG00000018334	crnkl1	89	69.520	FBgn0000377	crn	94	69.683	Drosophila_melanogaster
ENSAMXG00000018334	crnkl1	92	75.036	ENSETEG00000003711	CRNKL1	81	76.506	Echinops_telfairi
ENSAMXG00000018334	crnkl1	91	61.523	ENSEBUG00000013461	crnkl1	93	58.859	Eptatretus_burgeri
ENSAMXG00000018334	crnkl1	92	86.510	ENSEASG00005002072	CRNKL1	97	88.102	Equus_asinus_asinus
ENSAMXG00000018334	crnkl1	92	86.510	ENSECAG00000022215	CRNKL1	97	88.102	Equus_caballus
ENSAMXG00000018334	crnkl1	92	83.235	ENSEEUG00000000413	CRNKL1	89	85.241	Erinaceus_europaeus
ENSAMXG00000018334	crnkl1	90	91.031	ENSELUG00000015424	crnkl1	94	91.278	Esox_lucius
ENSAMXG00000018334	crnkl1	92	86.131	ENSFCAG00000000714	CRNKL1	97	88.102	Felis_catus
ENSAMXG00000018334	crnkl1	88	87.634	ENSFALG00000004611	CRNKL1	97	87.558	Ficedula_albicollis
ENSAMXG00000018334	crnkl1	92	85.777	ENSFDAG00000000604	CRNKL1	97	87.349	Fukomys_damarensis
ENSAMXG00000018334	crnkl1	90	91.154	ENSFHEG00000013163	crnkl1	87	91.128	Fundulus_heteroclitus
ENSAMXG00000018334	crnkl1	90	89.985	ENSGMOG00000007609	crnkl1	92	89.940	Gadus_morhua
ENSAMXG00000018334	crnkl1	90	88.191	ENSGALG00000008429	CRNKL1	97	88.120	Gallus_gallus
ENSAMXG00000018334	crnkl1	90	91.154	ENSGAFG00000014249	crnkl1	90	88.379	Gambusia_affinis
ENSAMXG00000018334	crnkl1	94	84.488	ENSGACG00000011852	crnkl1	89	89.640	Gasterosteus_aculeatus
ENSAMXG00000018334	crnkl1	90	86.186	ENSGAGG00000021233	CRNKL1	97	88.504	Gopherus_agassizii
ENSAMXG00000018334	crnkl1	92	86.131	ENSGGOG00000014176	CRNKL1	97	87.349	Gorilla_gorilla
ENSAMXG00000018334	crnkl1	96	87.586	ENSHBUG00000005246	crnkl1	88	92.932	Haplochromis_burtoni
ENSAMXG00000018334	crnkl1	92	85.401	ENSHGLG00000010856	CRNKL1	97	87.349	Heterocephalus_glaber_female
ENSAMXG00000018334	crnkl1	92	85.401	ENSHGLG00100011521	CRNKL1	97	87.349	Heterocephalus_glaber_male
ENSAMXG00000018334	crnkl1	90	88.922	ENSHCOG00000006420	crnkl1	96	88.872	Hippocampus_comes
ENSAMXG00000018334	crnkl1	92	78.792	ENSIPUG00000006836	-	97	79.336	Ictalurus_punctatus
ENSAMXG00000018334	crnkl1	86	73.899	ENSIPUG00000000315	-	99	75.118	Ictalurus_punctatus
ENSAMXG00000018334	crnkl1	90	89.343	ENSIPUG00000006751	crnkl1	90	93.374	Ictalurus_punctatus
ENSAMXG00000018334	crnkl1	92	85.547	ENSSTOG00000014747	CRNKL1	97	87.500	Ictidomys_tridecemlineatus
ENSAMXG00000018334	crnkl1	92	83.595	ENSJJAG00000016926	Crnkl1	97	85.441	Jaculus_jaculus
ENSAMXG00000018334	crnkl1	96	87.360	ENSKMAG00000003620	crnkl1	85	91.729	Kryptolebias_marmoratus
ENSAMXG00000018334	crnkl1	90	73.591	ENSLBEG00000003543	crnkl1	89	74.737	Labrus_bergylta
ENSAMXG00000018334	crnkl1	92	89.312	ENSLACG00000001129	CRNKL1	97	90.376	Latimeria_chalumnae
ENSAMXG00000018334	crnkl1	90	92.331	ENSLOCG00000016889	crnkl1	92	92.331	Lepisosteus_oculatus
ENSAMXG00000018334	crnkl1	92	85.131	ENSLAFG00000004512	CRNKL1	97	87.820	Loxodonta_africana
ENSAMXG00000018334	crnkl1	92	85.985	ENSMFAG00000039893	CRNKL1	97	87.199	Macaca_fascicularis
ENSAMXG00000018334	crnkl1	92	85.985	ENSMMUG00000007709	CRNKL1	97	87.199	Macaca_mulatta
ENSAMXG00000018334	crnkl1	92	85.985	ENSMNEG00000037490	CRNKL1	97	87.199	Macaca_nemestrina
ENSAMXG00000018334	crnkl1	92	85.985	ENSMLEG00000034885	CRNKL1	97	87.199	Mandrillus_leucophaeus
ENSAMXG00000018334	crnkl1	94	88.478	ENSMAMG00000008757	crnkl1	88	92.030	Mastacembelus_armatus
ENSAMXG00000018334	crnkl1	99	85.714	ENSMZEG00005022345	crnkl1	88	92.932	Maylandia_zebra
ENSAMXG00000018334	crnkl1	90	87.761	ENSMGAG00000003452	CRNKL1	91	87.688	Meleagris_gallopavo
ENSAMXG00000018334	crnkl1	93	85.153	ENSMAUG00000020764	Crnkl1	96	87.199	Mesocricetus_auratus
ENSAMXG00000018334	crnkl1	92	85.401	ENSMICG00000006048	CRNKL1	97	87.349	Microcebus_murinus
ENSAMXG00000018334	crnkl1	93	77.396	ENSMOCG00000000681	-	96	79.142	Microtus_ochrogaster
ENSAMXG00000018334	crnkl1	89	62.651	ENSMOCG00000004179	-	94	62.763	Microtus_ochrogaster
ENSAMXG00000018334	crnkl1	85	88.608	ENSMMOG00000017601	crnkl1	97	88.608	Mola_mola
ENSAMXG00000018334	crnkl1	92	83.285	ENSMODG00000005961	-	96	85.141	Monodelphis_domestica
ENSAMXG00000018334	crnkl1	92	80.702	ENSMODG00000010857	-	96	82.078	Monodelphis_domestica
ENSAMXG00000018334	crnkl1	93	63.324	ENSMALG00000011211	crnkl1	87	66.667	Monopterus_albus
ENSAMXG00000018334	crnkl1	93	85.735	MGP_CAROLIEiJ_G0024394	Crnkl1	96	87.651	Mus_caroli
ENSAMXG00000018334	crnkl1	93	85.590	ENSMUSG00000001767	Crnkl1	96	87.651	Mus_musculus
ENSAMXG00000018334	crnkl1	93	84.716	MGP_PahariEiJ_G0025838	Crnkl1	96	86.747	Mus_pahari
ENSAMXG00000018334	crnkl1	93	85.590	MGP_SPRETEiJ_G0025312	Crnkl1	96	87.651	Mus_spretus
ENSAMXG00000018334	crnkl1	92	86.131	ENSMPUG00000001226	CRNKL1	97	88.102	Mustela_putorius_furo
ENSAMXG00000018334	crnkl1	92	85.609	ENSMLUG00000016513	CRNKL1	86	87.669	Myotis_lucifugus
ENSAMXG00000018334	crnkl1	92	83.524	ENSNGAG00000023097	Crnkl1	97	85.377	Nannospalax_galili
ENSAMXG00000018334	crnkl1	98	87.070	ENSNBRG00000007867	crnkl1	88	93.083	Neolamprologus_brichardi
ENSAMXG00000018334	crnkl1	92	83.358	ENSNLEG00000009862	CRNKL1	97	84.488	Nomascus_leucogenys
ENSAMXG00000018334	crnkl1	90	86.418	ENSMEUG00000012167	-	97	88.444	Notamacropus_eugenii
ENSAMXG00000018334	crnkl1	92	80.758	ENSMEUG00000002361	-	97	82.256	Notamacropus_eugenii
ENSAMXG00000018334	crnkl1	80	58.494	ENSOPRG00000009242	-	61	58.755	Ochotona_princeps
ENSAMXG00000018334	crnkl1	92	84.964	ENSODEG00000012175	CRNKL1	97	86.898	Octodon_degus
ENSAMXG00000018334	crnkl1	93	89.542	ENSONIG00000018728	crnkl1	88	92.932	Oreochromis_niloticus
ENSAMXG00000018334	crnkl1	92	85.463	ENSOCUG00000015484	CRNKL1	80	87.688	Oryctolagus_cuniculus
ENSAMXG00000018334	crnkl1	95	85.977	ENSORLG00000017240	crnkl1	94	85.565	Oryzias_latipes
ENSAMXG00000018334	crnkl1	95	86.364	ENSORLG00020001742	crnkl1	89	89.774	Oryzias_latipes_hni
ENSAMXG00000018334	crnkl1	95	86.017	ENSORLG00015019564	crnkl1	89	89.774	Oryzias_latipes_hsok
ENSAMXG00000018334	crnkl1	94	87.749	ENSOMEG00000019895	crnkl1	93	87.536	Oryzias_melastigma
ENSAMXG00000018334	crnkl1	92	85.693	ENSOGAG00000011544	CRNKL1	97	87.500	Otolemur_garnettii
ENSAMXG00000018334	crnkl1	92	86.237	ENSOARG00000002150	CRNKL1	86	88.253	Ovis_aries
ENSAMXG00000018334	crnkl1	91	85.147	ENSPPAG00000027847	CRNKL1	80	86.446	Pan_paniscus
ENSAMXG00000018334	crnkl1	92	86.131	ENSPPRG00000001955	CRNKL1	97	88.102	Panthera_pardus
ENSAMXG00000018334	crnkl1	92	86.131	ENSPTIG00000007393	CRNKL1	97	88.102	Panthera_tigris_altaica
ENSAMXG00000018334	crnkl1	92	86.131	ENSPTRG00000030609	CRNKL1	97	87.349	Pan_troglodytes
ENSAMXG00000018334	crnkl1	92	85.985	ENSPANG00000017420	CRNKL1	97	87.199	Papio_anubis
ENSAMXG00000018334	crnkl1	89	86.336	ENSPKIG00000017093	crnkl1	87	86.377	Paramormyrops_kingsleyae
ENSAMXG00000018334	crnkl1	93	85.859	ENSPSIG00000012705	CRNKL1	96	88.218	Pelodiscus_sinensis
ENSAMXG00000018334	crnkl1	93	82.948	ENSPMGG00000006263	crnkl1	94	84.662	Periophthalmus_magnuspinnatus
ENSAMXG00000018334	crnkl1	93	85.590	ENSPEMG00000000073	-	96	87.651	Peromyscus_maniculatus_bairdii
ENSAMXG00000018334	crnkl1	90	83.832	ENSPMAG00000002250	crnkl1	96	83.934	Petromyzon_marinus
ENSAMXG00000018334	crnkl1	92	85.777	ENSPCIG00000025825	CRNKL1	93	87.349	Phascolarctos_cinereus
ENSAMXG00000018334	crnkl1	90	91.304	ENSPFOG00000005102	crnkl1	93	88.126	Poecilia_formosa
ENSAMXG00000018334	crnkl1	90	91.304	ENSPLAG00000007288	crnkl1	93	86.445	Poecilia_latipinna
ENSAMXG00000018334	crnkl1	90	91.454	ENSPMEG00000008865	crnkl1	90	91.429	Poecilia_mexicana
ENSAMXG00000018334	crnkl1	90	91.304	ENSPREG00000012615	crnkl1	89	91.429	Poecilia_reticulata
ENSAMXG00000018334	crnkl1	91	85.882	ENSPPYG00000010747	CRNKL1	78	87.199	Pongo_abelii
ENSAMXG00000018334	crnkl1	90	82.265	ENSPCAG00000003296	CRNKL1	82	82.831	Procavia_capensis
ENSAMXG00000018334	crnkl1	92	84.118	ENSPCOG00000017608	CRNKL1	80	86.145	Propithecus_coquereli
ENSAMXG00000018334	crnkl1	91	86.263	ENSPVAG00000006207	CRNKL1	81	87.952	Pteropus_vampyrus
ENSAMXG00000018334	crnkl1	93	89.542	ENSPNYG00000001977	crnkl1	88	92.782	Pundamilia_nyererei
ENSAMXG00000018334	crnkl1	95	94.901	ENSPNAG00000001507	crnkl1	95	94.476	Pygocentrus_nattereri
ENSAMXG00000018334	crnkl1	93	85.298	ENSRNOG00000040045	Crnkl1	96	87.349	Rattus_norvegicus
ENSAMXG00000018334	crnkl1	93	85.590	ENSRNOG00000010587	Crnkl1	96	87.651	Rattus_norvegicus
ENSAMXG00000018334	crnkl1	92	85.819	ENSRBIG00000031770	CRNKL1	97	87.199	Rhinopithecus_bieti
ENSAMXG00000018334	crnkl1	92	85.819	ENSRROG00000040450	CRNKL1	97	87.199	Rhinopithecus_roxellana
ENSAMXG00000018334	crnkl1	87	36.865	YLR117C	CLF1	99	36.919	Saccharomyces_cerevisiae
ENSAMXG00000018334	crnkl1	92	86.257	ENSSBOG00000029672	CRNKL1	97	87.500	Saimiri_boliviensis_boliviensis
ENSAMXG00000018334	crnkl1	89	70.303	ENSSHAG00000011199	CRNKL1	99	70.534	Sarcophilus_harrisii
ENSAMXG00000018334	crnkl1	89	91.704	ENSSFOG00015000946	crnkl1	97	83.849	Scleropages_formosus
ENSAMXG00000018334	crnkl1	100	84.253	ENSSMAG00000007933	crnkl1	96	84.688	Scophthalmus_maximus
ENSAMXG00000018334	crnkl1	94	81.883	ENSSDUG00000012625	crnkl1	85	84.985	Seriola_dumerili
ENSAMXG00000018334	crnkl1	96	87.258	ENSSLDG00000021413	crnkl1	86	92.632	Seriola_lalandi_dorsalis
ENSAMXG00000018334	crnkl1	92	85.547	ENSSARG00000006443	CRNKL1	80	87.500	Sorex_araneus
ENSAMXG00000018334	crnkl1	93	86.463	ENSSPUG00000005254	CRNKL1	97	88.271	Sphenodon_punctatus
ENSAMXG00000018334	crnkl1	93	90.988	ENSSPAG00000016150	crnkl1	86	92.782	Stegastes_partitus
ENSAMXG00000018334	crnkl1	93	86.483	ENSSSCG00000038587	CRNKL1	96	88.102	Sus_scrofa
ENSAMXG00000018334	crnkl1	90	87.612	ENSTGUG00000007645	CRNKL1	95	87.538	Taeniopygia_guttata
ENSAMXG00000018334	crnkl1	90	85.672	ENSTRUG00000015417	crnkl1	91	83.477	Takifugu_rubripes
ENSAMXG00000018334	crnkl1	90	90.120	ENSTNIG00000010710	crnkl1	96	90.090	Tetraodon_nigroviridis
ENSAMXG00000018334	crnkl1	84	85.440	ENSTBEG00000001304	CRNKL1	82	85.556	Tupaia_belangeri
ENSAMXG00000018334	crnkl1	84	83.040	ENSTTRG00000000484	CRNKL1	81	83.175	Tursiops_truncatus
ENSAMXG00000018334	crnkl1	92	86.131	ENSUAMG00000018586	CRNKL1	97	88.102	Ursus_americanus
ENSAMXG00000018334	crnkl1	92	86.131	ENSUMAG00000024957	CRNKL1	97	88.102	Ursus_maritimus
ENSAMXG00000018334	crnkl1	92	86.029	ENSVVUG00000012559	CRNKL1	80	88.102	Vulpes_vulpes
ENSAMXG00000018334	crnkl1	91	87.758	ENSXETG00000009698	crnkl1	97	88.438	Xenopus_tropicalis
ENSAMXG00000018334	crnkl1	90	90.120	ENSXCOG00000000824	crnkl1	93	87.966	Xiphophorus_couchianus
ENSAMXG00000018334	crnkl1	90	91.304	ENSXMAG00000006896	crnkl1	94	88.478	Xiphophorus_maculatus