EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018577 (Gene tree)
Gene ID: 103024869
Gene Symbol: -
Alias: -
Full Name: calreticulin-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9912 bases
Position: chr6:2736087-2745998
Accession: 103024869
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000019127	Calreticulin	PF00262.18	9.3e-82	1	2
ENSAMXP00000019127	Calreticulin	PF00262.18	9.3e-82	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000019127	-	3608	XM_007231670	ENSAMXP00000019127	423 (aa)	XP_007231732	W5LH15

Gene Model

Click here to download ENSAMXG00000018577's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04141	Protein processing in endoplasmic reticulum	KEGG
amex04145	Phagosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018577's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018577	-	78	38.734	ENSAMXG00000005367	clgn	66	38.734
ENSAMXG00000018577	-	83	34.286	ENSAMXG00000013782	si:ch211-274f20.2	78	34.286
ENSAMXG00000018577	-	69	39.193	ENSAMXG00000015162	canx	57	39.193
ENSAMXG00000018577	-	81	75.953	ENSAMXG00000015116	calr3b	86	73.003
ENSAMXG00000018577	-	76	77.259	ENSAMXG00000021635	CALR3	80	77.316

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018577	-	82	79.885	ENSCAFG00000017093	CALR	93	77.394	Canis_familiaris
ENSAMXG00000018577	-	85	80.278	ENSCPBG00000023916	-	89	84.545	Chrysemys_picta_bellii
ENSAMXG00000018577	-	84	75.843	ENSDARG00000103979	calr3a	85	75.843	Danio_rerio
ENSAMXG00000018577	-	89	65.344	FBgn0005585	Calr	88	65.659	Drosophila_melanogaster
ENSAMXG00000018577	-	77	32.746	FBgn0264077	Cnx14D	61	32.398	Drosophila_melanogaster
ENSAMXG00000018577	-	86	69.589	ENSEBUG00000008568	calr3a	85	68.681	Eptatretus_burgeri
ENSAMXG00000018577	-	86	76.309	ENSELUG00000008294	-	86	76.309	Esox_lucius
ENSAMXG00000018577	-	100	77.136	ENSFHEG00000000123	-	89	78.811	Fundulus_heteroclitus
ENSAMXG00000018577	-	86	86.501	ENSMAMG00000003716	-	88	86.544	Mastacembelus_armatus
ENSAMXG00000018577	-	100	79.412	ENSMMOG00000020031	-	86	84.252	Mola_mola
ENSAMXG00000018577	-	82	80.980	ENSMLUG00000012776	-	90	78.191	Myotis_lucifugus
ENSAMXG00000018577	-	86	72.452	ENSORLG00000017171	-	88	73.615	Oryzias_latipes
ENSAMXG00000018577	-	86	84.298	ENSOMEG00000010424	-	89	84.433	Oryzias_melastigma
ENSAMXG00000018577	-	69	39.769	ENSPSIG00000003895	-	60	39.193	Pelodiscus_sinensis
ENSAMXG00000018577	-	78	36.776	ENSPSIG00000009344	-	61	37.280	Pelodiscus_sinensis
ENSAMXG00000018577	-	78	83.582	ENSPSIG00000012928	-	89	83.429	Pelodiscus_sinensis
ENSAMXG00000018577	-	86	89.807	ENSPNAG00000016813	-	100	88.889	Pygocentrus_nattereri
ENSAMXG00000018577	-	89	72.414	ENSSMAG00000005047	calr3a	81	67.318	Scophthalmus_maximus
ENSAMXG00000018577	-	83	36.029	ENSSLDG00000020527	-	70	36.520	Seriola_lalandi_dorsalis
ENSAMXG00000018577	-	86	85.950	ENSTRUG00000004597	-	88	85.488	Takifugu_rubripes
ENSAMXG00000018577	-	78	37.783	ENSTRUG00000003449	-	54	37.783	Takifugu_rubripes
ENSAMXG00000018577	-	86	76.099	ENSXETG00000007937	calr	91	75.989	Xenopus_tropicalis