EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000018696 (Gene tree)
Gene ID: 103042426
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 14643 bases
Position: chr3:32822552-32837194
Accession: 103042426
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000031721	Beta-Casp	PF10996.8	1.6e-20	1	1
ENSAMXP00000019261	Beta-Casp	PF10996.8	2.6e-20	1	1
ENSAMXP00000019261	Lactamase_B	PF00753.27	1.6e-05	1	1
ENSAMXP00000031721	RMMBL	PF07521.12	1.9e-14	1	1
ENSAMXP00000019261	RMMBL	PF07521.12	2.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000054993	-	1800	-	ENSAMXP00000031721	599 (aa)	-	-
ENSAMXT00000019262	-	2890	XM_007255472	ENSAMXP00000019261	787 (aa)	XP_007255534	W5LHE9

Gene Model

Click here to download ENSAMXG00000018696's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018696's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018696	cpsf2	100	85.642	ENSG00000165934	CPSF2	100	88.750	Homo_sapiens
ENSAMXG00000018696	cpsf2	100	89.987	ENSAPOG00000001242	cpsf2	100	89.987	Acanthochromis_polyacanthus
ENSAMXG00000018696	cpsf2	58	80.870	ENSAMEG00000013790	-	100	80.870	Ailuropoda_melanoleuca
ENSAMXG00000018696	cpsf2	100	90.253	ENSACIG00000009331	cpsf2	100	90.253	Amphilophus_citrinellus
ENSAMXG00000018696	cpsf2	100	90.114	ENSAOCG00000014095	cpsf2	100	90.114	Amphiprion_ocellaris
ENSAMXG00000018696	cpsf2	100	90.114	ENSAPEG00000009158	cpsf2	100	90.114	Amphiprion_percula
ENSAMXG00000018696	cpsf2	99	88.294	ENSATEG00000017644	cpsf2	99	88.294	Anabas_testudineus
ENSAMXG00000018696	cpsf2	100	85.551	ENSAPLG00000006330	CPSF2	100	85.551	Anas_platyrhynchos
ENSAMXG00000018696	cpsf2	100	85.896	ENSACAG00000009245	CPSF2	100	85.896	Anolis_carolinensis
ENSAMXG00000018696	cpsf2	100	85.769	ENSANAG00000022915	CPSF2	100	85.769	Aotus_nancymaae
ENSAMXG00000018696	cpsf2	100	85.769	ENSBTAG00000010227	CPSF2	100	85.769	Bos_taurus
ENSAMXG00000018696	cpsf2	100	41.871	WBGene00017313	cpsf-2	100	41.822	Caenorhabditis_elegans
ENSAMXG00000018696	cpsf2	100	85.769	ENSCJAG00000018069	CPSF2	100	85.769	Callithrix_jacchus
ENSAMXG00000018696	cpsf2	100	85.642	ENSCAFG00000010909	CPSF2	100	85.642	Canis_familiaris
ENSAMXG00000018696	cpsf2	100	85.642	ENSCAFG00020020670	CPSF2	100	85.642	Canis_lupus_dingo
ENSAMXG00000018696	cpsf2	100	85.769	ENSCHIG00000023848	CPSF2	100	85.769	Capra_hircus
ENSAMXG00000018696	cpsf2	100	85.642	ENSTSYG00000009036	CPSF2	100	85.642	Carlito_syrichta
ENSAMXG00000018696	cpsf2	58	80.870	ENSCAPG00000004833	-	100	80.870	Cavia_aperea
ENSAMXG00000018696	cpsf2	100	85.769	ENSCPOG00000010899	CPSF2	100	85.769	Cavia_porcellus
ENSAMXG00000018696	cpsf2	100	85.769	ENSCCAG00000028088	CPSF2	100	85.769	Cebus_capucinus
ENSAMXG00000018696	cpsf2	100	85.769	ENSCATG00000030132	CPSF2	100	85.769	Cercocebus_atys
ENSAMXG00000018696	cpsf2	100	85.769	ENSCLAG00000012404	CPSF2	100	85.769	Chinchilla_lanigera
ENSAMXG00000018696	cpsf2	100	85.769	ENSCSAG00000011300	CPSF2	100	85.769	Chlorocebus_sabaeus
ENSAMXG00000018696	cpsf2	100	80.178	ENSCHOG00000012904	CPSF2	100	80.178	Choloepus_hoffmanni
ENSAMXG00000018696	cpsf2	100	85.769	ENSCPBG00000008766	CPSF2	97	85.769	Chrysemys_picta_bellii
ENSAMXG00000018696	cpsf2	100	53.722	ENSCING00000007881	-	100	53.102	Ciona_intestinalis
ENSAMXG00000018696	cpsf2	99	83.725	ENSCANG00000041651	CPSF2	100	85.753	Colobus_angolensis_palliatus
ENSAMXG00000018696	cpsf2	100	85.260	ENSCGRG00001006901	Cpsf2	100	85.260	Cricetulus_griseus_chok1gshd
ENSAMXG00000018696	cpsf2	100	85.260	ENSCGRG00000012416	Cpsf2	100	85.260	Cricetulus_griseus_crigri
ENSAMXG00000018696	cpsf2	100	89.227	ENSCSEG00000004116	cpsf2	100	89.227	Cynoglossus_semilaevis
ENSAMXG00000018696	cpsf2	100	88.847	ENSCVAG00000000095	cpsf2	100	88.973	Cyprinodon_variegatus
ENSAMXG00000018696	cpsf2	100	91.392	ENSDARG00000028971	cpsf2	100	91.392	Danio_rerio
ENSAMXG00000018696	cpsf2	100	85.769	ENSDNOG00000042757	CPSF2	100	85.769	Dasypus_novemcinctus
ENSAMXG00000018696	cpsf2	100	85.769	ENSDORG00000013709	Cpsf2	100	85.769	Dipodomys_ordii
ENSAMXG00000018696	cpsf2	100	53.523	FBgn0027873	Cpsf100	100	53.408	Drosophila_melanogaster
ENSAMXG00000018696	cpsf2	100	78.046	ENSETEG00000012123	CPSF2	100	78.046	Echinops_telfairi
ENSAMXG00000018696	cpsf2	62	75.269	ENSEBUG00000012098	cpsf2	93	76.773	Eptatretus_burgeri
ENSAMXG00000018696	cpsf2	89	91.126	ENSEASG00005021193	CPSF2	100	91.126	Equus_asinus_asinus
ENSAMXG00000018696	cpsf2	100	85.642	ENSECAG00000023935	CPSF2	100	85.642	Equus_caballus
ENSAMXG00000018696	cpsf2	100	89.586	ENSELUG00000008442	cpsf2	100	89.586	Esox_lucius
ENSAMXG00000018696	cpsf2	100	85.642	ENSFCAG00000007886	CPSF2	100	85.642	Felis_catus
ENSAMXG00000018696	cpsf2	100	85.769	ENSFALG00000002412	CPSF2	100	85.769	Ficedula_albicollis
ENSAMXG00000018696	cpsf2	100	85.642	ENSFDAG00000006327	CPSF2	100	85.642	Fukomys_damarensis
ENSAMXG00000018696	cpsf2	96	88.366	ENSFHEG00000015465	cpsf2	98	88.758	Fundulus_heteroclitus
ENSAMXG00000018696	cpsf2	100	87.028	ENSGMOG00000008761	cpsf2	100	87.028	Gadus_morhua
ENSAMXG00000018696	cpsf2	100	86.023	ENSGALG00000010783	CPSF2	100	86.150	Gallus_gallus
ENSAMXG00000018696	cpsf2	100	89.354	ENSGAFG00000001407	cpsf2	100	89.354	Gambusia_affinis
ENSAMXG00000018696	cpsf2	100	88.973	ENSGACG00000008418	cpsf2	100	88.973	Gasterosteus_aculeatus
ENSAMXG00000018696	cpsf2	100	85.896	ENSGAGG00000008287	CPSF2	100	85.896	Gopherus_agassizii
ENSAMXG00000018696	cpsf2	100	85.642	ENSGGOG00000011799	CPSF2	100	85.642	Gorilla_gorilla
ENSAMXG00000018696	cpsf2	100	89.100	ENSHBUG00000023466	cpsf2	100	89.100	Haplochromis_burtoni
ENSAMXG00000018696	cpsf2	100	85.769	ENSHGLG00000018311	CPSF2	100	85.769	Heterocephalus_glaber_female
ENSAMXG00000018696	cpsf2	100	85.769	ENSHGLG00100016460	CPSF2	100	85.769	Heterocephalus_glaber_male
ENSAMXG00000018696	cpsf2	100	88.213	ENSHCOG00000019527	cpsf2	98	88.213	Hippocampus_comes
ENSAMXG00000018696	cpsf2	100	93.393	ENSIPUG00000020857	cpsf2	100	93.393	Ictalurus_punctatus
ENSAMXG00000018696	cpsf2	100	85.769	ENSSTOG00000009528	CPSF2	100	85.769	Ictidomys_tridecemlineatus
ENSAMXG00000018696	cpsf2	100	85.642	ENSJJAG00000017925	Cpsf2	100	85.642	Jaculus_jaculus
ENSAMXG00000018696	cpsf2	100	87.959	ENSKMAG00000019429	cpsf2	100	87.959	Kryptolebias_marmoratus
ENSAMXG00000018696	cpsf2	99	87.312	ENSLBEG00000011585	cpsf2	100	89.037	Labrus_bergylta
ENSAMXG00000018696	cpsf2	100	84.625	ENSLACG00000019024	CPSF2	100	85.006	Latimeria_chalumnae
ENSAMXG00000018696	cpsf2	100	90.875	ENSLOCG00000014102	cpsf2	100	90.875	Lepisosteus_oculatus
ENSAMXG00000018696	cpsf2	100	85.551	ENSLAFG00000004891	CPSF2	100	85.551	Loxodonta_africana
ENSAMXG00000018696	cpsf2	100	85.769	ENSMFAG00000041212	CPSF2	100	85.769	Macaca_fascicularis
ENSAMXG00000018696	cpsf2	100	85.769	ENSMMUG00000000699	CPSF2	100	85.769	Macaca_mulatta
ENSAMXG00000018696	cpsf2	100	85.769	ENSMNEG00000031584	CPSF2	100	85.769	Macaca_nemestrina
ENSAMXG00000018696	cpsf2	100	85.769	ENSMLEG00000029394	CPSF2	100	85.769	Mandrillus_leucophaeus
ENSAMXG00000018696	cpsf2	100	89.480	ENSMAMG00000004235	cpsf2	100	89.480	Mastacembelus_armatus
ENSAMXG00000018696	cpsf2	100	89.227	ENSMZEG00005001769	cpsf2	100	89.227	Maylandia_zebra
ENSAMXG00000018696	cpsf2	100	85.787	ENSMGAG00000013122	CPSF2	100	85.914	Meleagris_gallopavo
ENSAMXG00000018696	cpsf2	100	85.260	ENSMAUG00000015160	Cpsf2	100	85.260	Mesocricetus_auratus
ENSAMXG00000018696	cpsf2	100	85.642	ENSMICG00000016441	CPSF2	100	85.642	Microcebus_murinus
ENSAMXG00000018696	cpsf2	100	85.260	ENSMOCG00000015372	Cpsf2	100	85.260	Microtus_ochrogaster
ENSAMXG00000018696	cpsf2	100	84.791	ENSMMOG00000015590	cpsf2	100	84.664	Mola_mola
ENSAMXG00000018696	cpsf2	100	85.896	ENSMODG00000002042	CPSF2	100	85.896	Monodelphis_domestica
ENSAMXG00000018696	cpsf2	100	86.058	ENSMALG00000022275	cpsf2	100	86.058	Monopterus_albus
ENSAMXG00000018696	cpsf2	100	85.388	ENSMUSG00000041781	Cpsf2	100	85.388	Mus_musculus
ENSAMXG00000018696	cpsf2	100	85.133	MGP_PahariEiJ_G0029791	Cpsf2	100	85.133	Mus_pahari
ENSAMXG00000018696	cpsf2	100	85.388	MGP_SPRETEiJ_G0018877	Cpsf2	100	85.388	Mus_spretus
ENSAMXG00000018696	cpsf2	100	85.769	ENSMPUG00000007617	CPSF2	98	85.769	Mustela_putorius_furo
ENSAMXG00000018696	cpsf2	100	85.642	ENSMLUG00000005570	CPSF2	100	85.642	Myotis_lucifugus
ENSAMXG00000018696	cpsf2	100	85.388	ENSNGAG00000020312	Cpsf2	100	85.388	Nannospalax_galili
ENSAMXG00000018696	cpsf2	100	89.607	ENSNBRG00000022402	cpsf2	100	89.607	Neolamprologus_brichardi
ENSAMXG00000018696	cpsf2	100	85.006	ENSNLEG00000017132	CPSF2	100	85.006	Nomascus_leucogenys
ENSAMXG00000018696	cpsf2	91	94.175	ENSMEUG00000008138	CPSF2	91	94.175	Notamacropus_eugenii
ENSAMXG00000018696	cpsf2	99	78.037	ENSOPRG00000008484	-	100	81.132	Ochotona_princeps
ENSAMXG00000018696	cpsf2	100	85.388	ENSODEG00000008682	CPSF2	100	85.388	Octodon_degus
ENSAMXG00000018696	cpsf2	100	90.114	ENSONIG00000005901	cpsf2	100	90.114	Oreochromis_niloticus
ENSAMXG00000018696	cpsf2	100	86.150	ENSOANG00000003822	CPSF2	100	86.150	Ornithorhynchus_anatinus
ENSAMXG00000018696	cpsf2	100	85.642	ENSOCUG00000005713	CPSF2	100	85.642	Oryctolagus_cuniculus
ENSAMXG00000018696	cpsf2	99	87.145	ENSORLG00000011628	cpsf2	100	83.523	Oryzias_latipes
ENSAMXG00000018696	cpsf2	100	89.227	ENSORLG00020016980	cpsf2	100	89.227	Oryzias_latipes_hni
ENSAMXG00000018696	cpsf2	100	89.227	ENSORLG00015011910	cpsf2	100	89.227	Oryzias_latipes_hsok
ENSAMXG00000018696	cpsf2	100	88.973	ENSOMEG00000022876	cpsf2	100	88.973	Oryzias_melastigma
ENSAMXG00000018696	cpsf2	58	76.012	ENSOGAG00000008605	-	100	76.012	Otolemur_garnettii
ENSAMXG00000018696	cpsf2	100	82.763	ENSOARG00000012889	CPSF2	100	82.763	Ovis_aries
ENSAMXG00000018696	cpsf2	100	85.642	ENSPPAG00000039666	CPSF2	100	85.642	Pan_paniscus
ENSAMXG00000018696	cpsf2	99	85.623	ENSPPRG00000010869	CPSF2	100	85.623	Panthera_pardus
ENSAMXG00000018696	cpsf2	100	85.642	ENSPTIG00000021202	CPSF2	100	85.642	Panthera_tigris_altaica
ENSAMXG00000018696	cpsf2	100	85.642	ENSPTRG00000006651	CPSF2	100	85.642	Pan_troglodytes
ENSAMXG00000018696	cpsf2	100	85.769	ENSPANG00000017417	CPSF2	100	85.769	Papio_anubis
ENSAMXG00000018696	cpsf2	99	88.926	ENSPKIG00000021453	cpsf2	100	85.260	Paramormyrops_kingsleyae
ENSAMXG00000018696	cpsf2	100	86.023	ENSPSIG00000006289	CPSF2	100	86.023	Pelodiscus_sinensis
ENSAMXG00000018696	cpsf2	99	83.721	ENSPMGG00000002511	cpsf2	99	84.359	Periophthalmus_magnuspinnatus
ENSAMXG00000018696	cpsf2	100	85.388	ENSPEMG00000007917	Cpsf2	100	85.388	Peromyscus_maniculatus_bairdii
ENSAMXG00000018696	cpsf2	100	73.492	ENSPMAG00000006205	cpsf2	100	73.492	Petromyzon_marinus
ENSAMXG00000018696	cpsf2	100	85.896	ENSPCIG00000011393	CPSF2	100	85.896	Phascolarctos_cinereus
ENSAMXG00000018696	cpsf2	100	89.480	ENSPFOG00000018648	cpsf2	100	89.480	Poecilia_formosa
ENSAMXG00000018696	cpsf2	100	89.480	ENSPLAG00000019199	cpsf2	99	89.480	Poecilia_latipinna
ENSAMXG00000018696	cpsf2	99	87.312	ENSPMEG00000012100	cpsf2	100	89.037	Poecilia_mexicana
ENSAMXG00000018696	cpsf2	100	89.100	ENSPREG00000008960	cpsf2	100	89.100	Poecilia_reticulata
ENSAMXG00000018696	cpsf2	84	81.238	ENSPPYG00000029685	-	100	81.238	Pongo_abelii
ENSAMXG00000018696	cpsf2	100	85.769	ENSPCAG00000012477	CPSF2	100	85.769	Procavia_capensis
ENSAMXG00000018696	cpsf2	100	85.896	ENSPCOG00000026387	CPSF2	100	85.896	Propithecus_coquereli
ENSAMXG00000018696	cpsf2	65	91.837	ENSPVAG00000004223	CPSF2	65	91.837	Pteropus_vampyrus
ENSAMXG00000018696	cpsf2	100	88.861	ENSPNYG00000023356	cpsf2	100	88.861	Pundamilia_nyererei
ENSAMXG00000018696	cpsf2	100	96.569	ENSPNAG00000001849	cpsf2	100	96.569	Pygocentrus_nattereri
ENSAMXG00000018696	cpsf2	100	85.260	ENSRNOG00000005733	Cpsf2	100	85.260	Rattus_norvegicus
ENSAMXG00000018696	cpsf2	100	85.769	ENSRBIG00000044792	CPSF2	100	85.769	Rhinopithecus_bieti
ENSAMXG00000018696	cpsf2	100	85.769	ENSRROG00000034875	CPSF2	100	85.769	Rhinopithecus_roxellana
ENSAMXG00000018696	cpsf2	100	85.769	ENSSBOG00000024571	CPSF2	100	85.769	Saimiri_boliviensis_boliviensis
ENSAMXG00000018696	cpsf2	100	85.896	ENSSHAG00000010458	CPSF2	100	85.896	Sarcophilus_harrisii
ENSAMXG00000018696	cpsf2	100	91.105	ENSSFOG00015002117	cpsf2	100	91.105	Scleropages_formosus
ENSAMXG00000018696	cpsf2	100	89.227	ENSSMAG00000002001	cpsf2	100	89.227	Scophthalmus_maximus
ENSAMXG00000018696	cpsf2	100	90.494	ENSSDUG00000004084	cpsf2	100	90.494	Seriola_dumerili
ENSAMXG00000018696	cpsf2	100	89.987	ENSSLDG00000024330	cpsf2	100	89.987	Seriola_lalandi_dorsalis
ENSAMXG00000018696	cpsf2	61	95.652	ENSSARG00000009784	-	63	95.050	Sorex_araneus
ENSAMXG00000018696	cpsf2	100	85.642	ENSSPUG00000013485	CPSF2	100	85.642	Sphenodon_punctatus
ENSAMXG00000018696	cpsf2	100	89.861	ENSSPAG00000013284	cpsf2	100	89.861	Stegastes_partitus
ENSAMXG00000018696	cpsf2	100	85.642	ENSSSCG00000002447	CPSF2	100	85.642	Sus_scrofa
ENSAMXG00000018696	cpsf2	100	85.896	ENSTGUG00000012571	-	100	85.896	Taeniopygia_guttata
ENSAMXG00000018696	cpsf2	51	79.739	ENSTGUG00000016355	-	100	79.739	Taeniopygia_guttata
ENSAMXG00000018696	cpsf2	100	88.973	ENSTRUG00000003742	cpsf2	100	88.973	Takifugu_rubripes
ENSAMXG00000018696	cpsf2	100	87.358	ENSTNIG00000012228	cpsf2	100	88.369	Tetraodon_nigroviridis
ENSAMXG00000018696	cpsf2	91	83.721	ENSTBEG00000004530	CPSF2	94	83.721	Tupaia_belangeri
ENSAMXG00000018696	cpsf2	99	82.718	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSAMXG00000018696	cpsf2	100	85.769	ENSUAMG00000028071	CPSF2	100	85.769	Ursus_americanus
ENSAMXG00000018696	cpsf2	100	85.769	ENSUMAG00000005029	CPSF2	100	91.304	Ursus_maritimus
ENSAMXG00000018696	cpsf2	99	85.623	ENSVPAG00000003503	CPSF2	100	85.623	Vicugna_pacos
ENSAMXG00000018696	cpsf2	100	85.642	ENSVVUG00000024642	CPSF2	100	85.642	Vulpes_vulpes
ENSAMXG00000018696	cpsf2	100	84.244	ENSXETG00000010289	cpsf2	100	84.244	Xenopus_tropicalis
ENSAMXG00000018696	cpsf2	100	89.480	ENSXCOG00000001764	cpsf2	100	89.480	Xiphophorus_couchianus
ENSAMXG00000018696	cpsf2	100	89.734	ENSXMAG00000017048	cpsf2	100	89.734	Xiphophorus_maculatus