EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018751 (Gene tree)
Gene ID: 103046062
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 24259 bases
Position: chr20:17439080-17463338
Accession: 103046062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000039130	rRNA_proc-arch	PF13234.6	2.3e-87	1	1
ENSAMXP00000019328	rRNA_proc-arch	PF13234.6	2.6e-87	1	1
ENSAMXP00000039130	DEAD	PF00270.29	1.3e-16	1	1
ENSAMXP00000019328	DEAD	PF00270.29	1.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034717	-	5129	XM_022681164	ENSAMXP00000039130	995 (aa)	XP_022536885	UPI000BBDF136
ENSAMXT00000019328	-	3024	-	ENSAMXP00000019328	1007 (aa)	-	W5LHL6

Gene Model

Click here to download ENSAMXG00000018751's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018751's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018751	mtrex	89	35.365	ENSAMXG00000011517	skiv2l	72	35.691

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018751	mtrex	99	83.835	ENSG00000039123	MTREX	97	81.631	Homo_sapiens
ENSAMXG00000018751	mtrex	99	86.538	ENSAPOG00000007814	mtrex	95	86.538	Acanthochromis_polyacanthus
ENSAMXG00000018751	mtrex	99	83.952	ENSAMEG00000013856	MTREX	97	81.551	Ailuropoda_melanoleuca
ENSAMXG00000018751	mtrex	99	84.397	ENSACIG00000015117	mtrex	95	85.891	Amphilophus_citrinellus
ENSAMXG00000018751	mtrex	99	86.842	ENSAOCG00000011884	mtrex	95	86.842	Amphiprion_ocellaris
ENSAMXG00000018751	mtrex	99	86.842	ENSAPEG00000019384	mtrex	95	86.842	Amphiprion_percula
ENSAMXG00000018751	mtrex	99	86.930	ENSATEG00000015117	mtrex	95	86.930	Anabas_testudineus
ENSAMXG00000018751	mtrex	95	85.547	ENSAPLG00000009694	MTREX	94	85.547	Anas_platyrhynchos
ENSAMXG00000018751	mtrex	99	84.523	ENSACAG00000015200	MTREX	92	84.290	Anolis_carolinensis
ENSAMXG00000018751	mtrex	99	84.216	ENSANAG00000023095	MTREX	95	84.114	Aotus_nancymaae
ENSAMXG00000018751	mtrex	99	87.348	ENSACLG00000001921	mtrex	95	86.930	Astatotilapia_calliptera
ENSAMXG00000018751	mtrex	99	84.205	ENSBTAG00000010518	MTREX	97	81.890	Bos_taurus
ENSAMXG00000018751	mtrex	89	53.086	WBGene00012342	mtr-4	86	52.974	Caenorhabditis_elegans
ENSAMXG00000018751	mtrex	99	83.936	ENSCJAG00000001773	MTREX	95	83.533	Callithrix_jacchus
ENSAMXG00000018751	mtrex	99	84.137	ENSCAFG00000006818	MTREX	97	82.122	Canis_familiaris
ENSAMXG00000018751	mtrex	99	84.137	ENSCAFG00020024352	MTREX	97	82.122	Canis_lupus_dingo
ENSAMXG00000018751	mtrex	99	83.936	ENSCHIG00000024413	MTREX	97	81.631	Capra_hircus
ENSAMXG00000018751	mtrex	93	84.783	ENSTSYG00000007389	MTREX	95	84.783	Carlito_syrichta
ENSAMXG00000018751	mtrex	95	62.959	ENSCAPG00000008696	MTREX	93	62.842	Cavia_aperea
ENSAMXG00000018751	mtrex	99	83.835	ENSCPOG00000009797	MTREX	95	83.735	Cavia_porcellus
ENSAMXG00000018751	mtrex	99	84.036	ENSCCAG00000014177	MTREX	97	81.729	Cebus_capucinus
ENSAMXG00000018751	mtrex	99	84.036	ENSCATG00000042153	MTREX	97	81.631	Cercocebus_atys
ENSAMXG00000018751	mtrex	99	83.735	ENSCLAG00000006622	MTREX	97	81.925	Chinchilla_lanigera
ENSAMXG00000018751	mtrex	99	80.080	ENSCSAG00000016445	MTREX	97	77.963	Chlorocebus_sabaeus
ENSAMXG00000018751	mtrex	67	98.611	ENSCHOG00000010936	-	56	98.611	Choloepus_hoffmanni
ENSAMXG00000018751	mtrex	99	85.339	ENSCPBG00000026551	MTREX	89	85.137	Chrysemys_picta_bellii
ENSAMXG00000018751	mtrex	99	65.486	ENSCING00000003239	-	96	65.000	Ciona_intestinalis
ENSAMXG00000018751	mtrex	99	63.911	ENSCSAVG00000009304	-	97	68.036	Ciona_savignyi
ENSAMXG00000018751	mtrex	99	83.835	ENSCANG00000035770	MTREX	97	81.532	Colobus_angolensis_palliatus
ENSAMXG00000018751	mtrex	99	84.068	ENSCGRG00001024680	Mtrex	97	81.809	Cricetulus_griseus_chok1gshd
ENSAMXG00000018751	mtrex	99	84.068	ENSCGRG00000000307	Mtrex	97	81.809	Cricetulus_griseus_crigri
ENSAMXG00000018751	mtrex	99	85.903	ENSCSEG00000018621	mtrex	93	85.903	Cynoglossus_semilaevis
ENSAMXG00000018751	mtrex	99	86.437	ENSCVAG00000004556	mtrex	95	86.640	Cyprinodon_variegatus
ENSAMXG00000018751	mtrex	99	90.061	ENSDARG00000013457	mtrex	95	90.061	Danio_rerio
ENSAMXG00000018751	mtrex	99	83.600	ENSDNOG00000015375	MTREX	97	81.409	Dasypus_novemcinctus
ENSAMXG00000018751	mtrex	99	83.667	ENSDORG00000006782	Mtrex	97	81.729	Dipodomys_ordii
ENSAMXG00000018751	mtrex	98	60.753	FBgn0001986	Mtr4	95	60.555	Drosophila_melanogaster
ENSAMXG00000018751	mtrex	84	91.743	ENSETEG00000000727	MTREX	80	91.743	Echinops_telfairi
ENSAMXG00000018751	mtrex	99	73.131	ENSEBUG00000012869	mtrex	97	71.912	Eptatretus_burgeri
ENSAMXG00000018751	mtrex	99	83.835	ENSEASG00005013270	MTREX	97	81.845	Equus_asinus_asinus
ENSAMXG00000018751	mtrex	99	83.936	ENSECAG00000023723	MTREX	95	88.415	Equus_caballus
ENSAMXG00000018751	mtrex	99	75.904	ENSEEUG00000000527	MTREX	99	74.263	Erinaceus_europaeus
ENSAMXG00000018751	mtrex	99	89.564	ENSELUG00000004898	mtrex	97	90.683	Esox_lucius
ENSAMXG00000018751	mtrex	99	83.936	ENSFCAG00000010575	MTREX	97	81.925	Felis_catus
ENSAMXG00000018751	mtrex	99	83.721	ENSFALG00000010850	MTREX	95	83.401	Ficedula_albicollis
ENSAMXG00000018751	mtrex	99	83.501	ENSFDAG00000011199	MTREX	95	83.400	Fukomys_damarensis
ENSAMXG00000018751	mtrex	99	86.235	ENSFHEG00000023014	mtrex	95	84.929	Fundulus_heteroclitus
ENSAMXG00000018751	mtrex	99	82.168	ENSGMOG00000014702	mtrex	95	82.085	Gadus_morhua
ENSAMXG00000018751	mtrex	99	84.732	ENSGALG00000014709	MTREX	82	84.429	Gallus_gallus
ENSAMXG00000018751	mtrex	99	85.714	ENSGAFG00000012425	mtrex	95	86.120	Gambusia_affinis
ENSAMXG00000018751	mtrex	99	81.339	ENSGACG00000016260	mtrex	91	86.997	Gasterosteus_aculeatus
ENSAMXG00000018751	mtrex	99	84.631	ENSGAGG00000020036	MTREX	95	84.732	Gopherus_agassizii
ENSAMXG00000018751	mtrex	99	83.936	ENSGGOG00000001867	MTREX	97	81.729	Gorilla_gorilla
ENSAMXG00000018751	mtrex	99	87.348	ENSHBUG00000006229	mtrex	95	86.930	Haplochromis_burtoni
ENSAMXG00000018751	mtrex	99	83.333	ENSHGLG00000019445	SKIV2L2	95	83.400	Heterocephalus_glaber_female
ENSAMXG00000018751	mtrex	99	83.333	ENSHGLG00100011833	SKIV2L2	95	83.400	Heterocephalus_glaber_male
ENSAMXG00000018751	mtrex	91	85.177	ENSHCOG00000019995	mtrex	95	85.177	Hippocampus_comes
ENSAMXG00000018751	mtrex	99	89.858	ENSIPUG00000024348	skiv2l2	95	89.858	Ictalurus_punctatus
ENSAMXG00000018751	mtrex	99	83.467	ENSSTOG00000010802	MTREX	97	81.532	Ictidomys_tridecemlineatus
ENSAMXG00000018751	mtrex	99	79.899	ENSJJAG00000020975	Mtrex	95	79.899	Jaculus_jaculus
ENSAMXG00000018751	mtrex	99	85.830	ENSKMAG00000012642	mtrex	95	86.032	Kryptolebias_marmoratus
ENSAMXG00000018751	mtrex	99	86.640	ENSLBEG00000019367	mtrex	94	88.093	Labrus_bergylta
ENSAMXG00000018751	mtrex	99	86.613	ENSLACG00000009075	MTREX	95	86.525	Latimeria_chalumnae
ENSAMXG00000018751	mtrex	99	88.259	ENSLOCG00000010186	mtrex	95	88.057	Lepisosteus_oculatus
ENSAMXG00000018751	mtrex	99	82.129	ENSLAFG00000010497	MTREX	97	80.433	Loxodonta_africana
ENSAMXG00000018751	mtrex	99	84.036	ENSMFAG00000031610	MTREX	97	81.631	Macaca_fascicularis
ENSAMXG00000018751	mtrex	99	83.936	ENSMMUG00000010379	MTREX	97	81.765	Macaca_mulatta
ENSAMXG00000018751	mtrex	99	84.036	ENSMNEG00000032746	MTREX	97	81.631	Macaca_nemestrina
ENSAMXG00000018751	mtrex	99	84.036	ENSMLEG00000041051	MTREX	97	81.631	Mandrillus_leucophaeus
ENSAMXG00000018751	mtrex	99	84.888	ENSMAMG00000016753	mtrex	93	88.701	Mastacembelus_armatus
ENSAMXG00000018751	mtrex	99	87.348	ENSMZEG00005000414	mtrex	95	86.930	Maylandia_zebra
ENSAMXG00000018751	mtrex	94	61.506	ENSMGAG00000003980	MTREX	95	61.506	Meleagris_gallopavo
ENSAMXG00000018751	mtrex	99	83.768	ENSMAUG00000010727	Mtrex	97	81.613	Mesocricetus_auratus
ENSAMXG00000018751	mtrex	99	84.137	ENSMICG00000012779	MTREX	97	81.827	Microcebus_murinus
ENSAMXG00000018751	mtrex	99	83.635	ENSMOCG00000019886	Mtrex	97	81.631	Microtus_ochrogaster
ENSAMXG00000018751	mtrex	99	83.434	ENSMMOG00000002476	mtrex	95	84.774	Mola_mola
ENSAMXG00000018751	mtrex	99	84.397	ENSMODG00000019494	MTREX	97	82.359	Monodelphis_domestica
ENSAMXG00000018751	mtrex	96	79.858	ENSMALG00000002917	mtrex	93	84.273	Monopterus_albus
ENSAMXG00000018751	mtrex	99	83.501	MGP_CAROLIEiJ_G0018896	Mtrex	97	81.299	Mus_caroli
ENSAMXG00000018751	mtrex	99	83.501	ENSMUSG00000016018	Mtrex	97	81.299	Mus_musculus
ENSAMXG00000018751	mtrex	99	83.300	MGP_PahariEiJ_G0015967	Mtrex	97	81.201	Mus_pahari
ENSAMXG00000018751	mtrex	99	83.501	MGP_SPRETEiJ_G0019775	Mtrex	97	81.299	Mus_spretus
ENSAMXG00000018751	mtrex	99	84.036	ENSMPUG00000007619	MTREX	97	82.024	Mustela_putorius_furo
ENSAMXG00000018751	mtrex	99	83.751	ENSMLUG00000001152	MTREX	97	81.354	Myotis_lucifugus
ENSAMXG00000018751	mtrex	99	83.936	ENSNGAG00000011938	Mtrex	97	81.649	Nannospalax_galili
ENSAMXG00000018751	mtrex	99	87.551	ENSNBRG00000011293	mtrex	95	87.133	Neolamprologus_brichardi
ENSAMXG00000018751	mtrex	99	80.060	ENSNLEG00000001494	MTREX	97	77.941	Nomascus_leucogenys
ENSAMXG00000018751	mtrex	82	65.594	ENSMEUG00000006496	-	78	65.594	Notamacropus_eugenii
ENSAMXG00000018751	mtrex	99	74.194	ENSOPRG00000008009	MTREX	95	73.668	Ochotona_princeps
ENSAMXG00000018751	mtrex	99	83.032	ENSODEG00000017234	MTREX	97	81.373	Octodon_degus
ENSAMXG00000018751	mtrex	99	87.551	ENSONIG00000007587	mtrex	95	87.031	Oreochromis_niloticus
ENSAMXG00000018751	mtrex	52	84.302	ENSOANG00000004885	-	99	84.302	Ornithorhynchus_anatinus
ENSAMXG00000018751	mtrex	99	84.306	ENSOCUG00000004463	MTREX	97	81.988	Oryctolagus_cuniculus
ENSAMXG00000018751	mtrex	99	86.322	ENSORLG00000005443	mtrex	95	86.322	Oryzias_latipes
ENSAMXG00000018751	mtrex	99	86.322	ENSORLG00020006329	mtrex	95	86.322	Oryzias_latipes_hni
ENSAMXG00000018751	mtrex	99	86.322	ENSORLG00015012924	mtrex	95	86.322	Oryzias_latipes_hsok
ENSAMXG00000018751	mtrex	99	86.162	ENSOMEG00000008825	mtrex	95	86.162	Oryzias_melastigma
ENSAMXG00000018751	mtrex	99	84.036	ENSOGAG00000002886	MTREX	97	81.925	Otolemur_garnettii
ENSAMXG00000018751	mtrex	99	83.684	ENSOARG00000007764	MTREX	97	81.391	Ovis_aries
ENSAMXG00000018751	mtrex	99	83.936	ENSPPAG00000039291	MTREX	97	81.729	Pan_paniscus
ENSAMXG00000018751	mtrex	99	83.936	ENSPPRG00000019701	MTREX	97	81.925	Panthera_pardus
ENSAMXG00000018751	mtrex	99	82.430	ENSPTIG00000009313	MTREX	97	80.452	Panthera_tigris_altaica
ENSAMXG00000018751	mtrex	99	83.936	ENSPTRG00000016878	MTREX	97	81.729	Pan_troglodytes
ENSAMXG00000018751	mtrex	99	83.936	ENSPANG00000009697	MTREX	97	81.532	Papio_anubis
ENSAMXG00000018751	mtrex	99	88.438	ENSPKIG00000020833	mtrex	95	88.438	Paramormyrops_kingsleyae
ENSAMXG00000018751	mtrex	99	84.701	ENSPSIG00000012150	MTREX	95	84.701	Pelodiscus_sinensis
ENSAMXG00000018751	mtrex	99	83.923	ENSPMGG00000002582	mtrex	95	84.119	Periophthalmus_magnuspinnatus
ENSAMXG00000018751	mtrex	99	66.196	ENSPMAG00000009668	mtrex	99	66.196	Petromyzon_marinus
ENSAMXG00000018751	mtrex	91	88.457	ENSPCIG00000024730	MTREX	97	86.999	Phascolarctos_cinereus
ENSAMXG00000018751	mtrex	74	88.753	ENSPFOG00000003141	mtrex	94	88.889	Poecilia_formosa
ENSAMXG00000018751	mtrex	99	86.134	ENSPLAG00000021311	mtrex	95	86.235	Poecilia_latipinna
ENSAMXG00000018751	mtrex	91	88.300	ENSPMEG00000010597	mtrex	94	88.411	Poecilia_mexicana
ENSAMXG00000018751	mtrex	99	85.830	ENSPREG00000003089	mtrex	95	85.931	Poecilia_reticulata
ENSAMXG00000018751	mtrex	99	83.936	ENSPPYG00000015469	MTREX	96	81.729	Pongo_abelii
ENSAMXG00000018751	mtrex	93	68.293	ENSPCAG00000013120	MTREX	91	67.578	Procavia_capensis
ENSAMXG00000018751	mtrex	95	79.101	ENSPCOG00000018092	MTREX	98	78.953	Propithecus_coquereli
ENSAMXG00000018751	mtrex	99	83.835	ENSPVAG00000002445	MTREX	97	81.631	Pteropus_vampyrus
ENSAMXG00000018751	mtrex	99	87.247	ENSPNYG00000006164	mtrex	95	86.829	Pundamilia_nyererei
ENSAMXG00000018751	mtrex	99	94.422	ENSPNAG00000008794	mtrex	95	94.422	Pygocentrus_nattereri
ENSAMXG00000018751	mtrex	99	83.333	ENSRNOG00000010125	Mtrex	95	81.532	Rattus_norvegicus
ENSAMXG00000018751	mtrex	99	82.129	ENSRBIG00000034930	MTREX	97	80.059	Rhinopithecus_bieti
ENSAMXG00000018751	mtrex	99	83.835	ENSRROG00000039895	MTREX	97	81.729	Rhinopithecus_roxellana
ENSAMXG00000018751	mtrex	89	56.560	YJL050W	MTR4	90	53.381	Saccharomyces_cerevisiae
ENSAMXG00000018751	mtrex	99	84.036	ENSSBOG00000026693	MTREX	97	81.729	Saimiri_boliviensis_boliviensis
ENSAMXG00000018751	mtrex	95	85.579	ENSSHAG00000004600	MTREX	93	86.975	Sarcophilus_harrisii
ENSAMXG00000018751	mtrex	99	88.134	ENSSFOG00015014355	skiv2l2	97	86.259	Scleropages_formosus
ENSAMXG00000018751	mtrex	99	87.045	ENSSMAG00000007572	mtrex	95	87.045	Scophthalmus_maximus
ENSAMXG00000018751	mtrex	99	87.449	ENSSDUG00000023789	mtrex	95	87.449	Seriola_dumerili
ENSAMXG00000018751	mtrex	99	87.348	ENSSLDG00000006301	mtrex	95	87.348	Seriola_lalandi_dorsalis
ENSAMXG00000018751	mtrex	99	82.329	ENSSARG00000008387	MTREX	88	87.163	Sorex_araneus
ENSAMXG00000018751	mtrex	88	85.870	ENSSPUG00000007071	MTREX	93	83.624	Sphenodon_punctatus
ENSAMXG00000018751	mtrex	99	83.350	ENSSPAG00000011319	mtrex	95	84.877	Stegastes_partitus
ENSAMXG00000018751	mtrex	99	84.036	ENSSSCG00000016911	MTREX	97	82.122	Sus_scrofa
ENSAMXG00000018751	mtrex	99	82.929	ENSTGUG00000002480	MTREX	95	82.929	Taeniopygia_guttata
ENSAMXG00000018751	mtrex	99	85.324	ENSTRUG00000014571	mtrex	95	85.324	Takifugu_rubripes
ENSAMXG00000018751	mtrex	99	68.373	ENSTBEG00000007769	MTREX	95	67.968	Tupaia_belangeri
ENSAMXG00000018751	mtrex	99	83.903	ENSTTRG00000008678	MTREX	95	83.702	Tursiops_truncatus
ENSAMXG00000018751	mtrex	99	84.036	ENSUAMG00000023061	MTREX	98	83.884	Ursus_americanus
ENSAMXG00000018751	mtrex	99	83.702	ENSUMAG00000009373	MTREX	96	87.825	Ursus_maritimus
ENSAMXG00000018751	mtrex	99	73.896	ENSVPAG00000011174	MTREX	97	71.709	Vicugna_pacos
ENSAMXG00000018751	mtrex	99	84.237	ENSVVUG00000021337	MTREX	97	82.220	Vulpes_vulpes
ENSAMXG00000018751	mtrex	99	85.931	ENSXETG00000032798	MTREX	95	86.018	Xenopus_tropicalis
ENSAMXG00000018751	mtrex	99	86.032	ENSXMAG00000004799	mtrex	98	86.322	Xiphophorus_maculatus