EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000018779 (Gene tree)
Gene ID
103024072
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
polyadenylate-binding protein 4
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
35248 bases
Position
chr9:7767077-7802324
Accession
103024072
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000046816PABPPF00658.181.5e-3111
ENSAMXP00000019330PABPPF00658.181.6e-3111
ENSAMXP00000046816RRM_5PF13893.63.1e-0611
ENSAMXP00000019330RRM_5PF13893.63.7e-0611
ENSAMXP00000019330RRM_1PF00076.224.4e-8614
ENSAMXP00000019330RRM_1PF00076.224.4e-8624
ENSAMXP00000019330RRM_1PF00076.224.4e-8634
ENSAMXP00000019330RRM_1PF00076.224.4e-8644
ENSAMXP00000046816RRM_1PF00076.223.8e-8514
ENSAMXP00000046816RRM_1PF00076.223.8e-8524
ENSAMXP00000046816RRM_1PF00076.223.8e-8534
ENSAMXP00000046816RRM_1PF00076.223.8e-8544
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000019330-1818-ENSAMXP00000019330605 (aa)-W5LHL8
ENSAMXT00000054693-4965XM_022672468ENSAMXP00000046816589 (aa)XP_022528189-
Gene Model
Click here to download ENSAMXG00000018779's gene model file
Pathways
Pathway IDPathway NameSource
amex03013RNA transportKEGG
amex03015mRNA surveillance pathwayKEGG
amex03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018779's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000018779pabpc45633.766ENSAMXG00000031223elavl1a9133.766
ENSAMXG00000018779pabpc45736.145ENSAMXG00000036990ELAVL28336.145
ENSAMXG00000018779pabpc49765.079ENSAMXG00000013552pabpc1l9964.762
ENSAMXG00000018779pabpc49873.071ENSAMXG00000008599pabpc1b9972.598
ENSAMXG00000018779pabpc49872.283ENSAMXG00000018395-9972.126
ENSAMXG00000018779pabpc46930.508ENSAMXG00000037884tia1l9230.508
ENSAMXG00000018779pabpc45934.940ENSAMXG00000000687elavl48834.940
ENSAMXG00000018779pabpc45637.500ENSAMXG00000020576celf15238.372
ENSAMXG00000018779pabpc45638.372ENSAMXG00000005933celf26238.372
ENSAMXG00000018779pabpc45635.632ENSAMXG00000017399rbms2b5235.632
ENSAMXG00000018779pabpc45736.145ENSAMXG00000040498elavl39836.145
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000018779pabpc49979.556ENSG00000090621PABPC49997.297Homo_sapiens
ENSAMXG00000018779pabpc49886.817ENSAPOG00000001161pabpc49986.212Acanthochromis_polyacanthus
ENSAMXG00000018779pabpc49749.591ENSAMEG00000015083-9848.130Ailuropoda_melanoleuca
ENSAMXG00000018779pabpc49976.364ENSAMEG00000011535-9975.758Ailuropoda_melanoleuca
ENSAMXG00000018779pabpc49987.163ENSACIG00000023343pabpc49987.163Amphilophus_citrinellus
ENSAMXG00000018779pabpc49886.495ENSAOCG00000021529pabpc49985.895Amphiprion_ocellaris
ENSAMXG00000018779pabpc49886.495ENSAPEG00000019196pabpc49985.895Amphiprion_percula
ENSAMXG00000018779pabpc49886.838ENSATEG00000007402pabpc49986.392Anabas_testudineus
ENSAMXG00000018779pabpc49981.703ENSAPLG00000009729-10081.073Anas_platyrhynchos
ENSAMXG00000018779pabpc49880.427ENSACAG00000002544PABPC410079.715Anolis_carolinensis
ENSAMXG00000018779pabpc49979.556ENSANAG00000025079PABPC49978.922Aotus_nancymaae
ENSAMXG00000018779pabpc49987.005ENSACLG00000019558pabpc49987.005Astatotilapia_calliptera
ENSAMXG00000018779pabpc45683.929ENSBTAG00000048536-9383.929Bos_taurus
ENSAMXG00000018779pabpc49977.209ENSBTAG00000017125PABPC49976.899Bos_taurus
ENSAMXG00000018779pabpc49979.715ENSCJAG00000002512-9979.081Callithrix_jacchus
ENSAMXG00000018779pabpc47670.270ENSCJAG00000045953-9768.468Callithrix_jacchus
ENSAMXG00000018779pabpc49979.873ENSCAFG00000003081PABPC49979.081Canis_familiaris
ENSAMXG00000018779pabpc49976.515ENSCAFG00020004161PABPC49975.909Canis_lupus_dingo
ENSAMXG00000018779pabpc49964.640ENSCHIG00000023385-9964.160Capra_hircus
ENSAMXG00000018779pabpc49976.515ENSCHIG00000019398-9975.909Capra_hircus
ENSAMXG00000018779pabpc49979.715ENSTSYG00000006532PABPC49978.922Carlito_syrichta
ENSAMXG00000018779pabpc49979.618ENSCAPG00000015984PABPC49978.981Cavia_aperea
ENSAMXG00000018779pabpc49979.715ENSCPOG00000009552PABPC49979.081Cavia_porcellus
ENSAMXG00000018779pabpc49979.841ENSCCAG00000037306PABPC49979.206Cebus_capucinus
ENSAMXG00000018779pabpc49979.556ENSCATG00000042164PABPC49978.922Cercocebus_atys
ENSAMXG00000018779pabpc49980.032ENSCLAG00000011899PABPC49979.239Chinchilla_lanigera
ENSAMXG00000018779pabpc49976.364ENSCSAG00000001135PABPC49975.758Chlorocebus_sabaeus
ENSAMXG00000018779pabpc48483.673ENSCHOG00000005327PABPC47983.673Choloepus_hoffmanni
ENSAMXG00000018779pabpc49982.019ENSCPBG00000001038PABPC410081.388Chrysemys_picta_bellii
ENSAMXG00000018779pabpc49879.549ENSCANG00000034177PABPC49978.905Colobus_angolensis_palliatus
ENSAMXG00000018779pabpc49878.812ENSCGRG00001018166Pabpc49977.603Cricetulus_griseus_chok1gshd
ENSAMXG00000018779pabpc49778.793ENSCGRG00000009777Pabpc49977.564Cricetulus_griseus_crigri
ENSAMXG00000018779pabpc49986.212ENSCSEG00000000130pabpc49986.212Cynoglossus_semilaevis
ENSAMXG00000018779pabpc49986.560ENSCVAG00000019246pabpc410086.560Cyprinodon_variegatus
ENSAMXG00000018779pabpc49989.650ENSDARG00000059259pabpc410089.256Danio_rerio
ENSAMXG00000018779pabpc49877.996ENSDNOG00000018444-9977.102Dasypus_novemcinctus
ENSAMXG00000018779pabpc49976.380ENSDORG00000011581Pabpc49977.329Dipodomys_ordii
ENSAMXG00000018779pabpc49993.846ENSETEG00000018453-8493.846Echinops_telfairi
ENSAMXG00000018779pabpc48451.206ENSETEG00000009172-9949.815Echinops_telfairi
ENSAMXG00000018779pabpc49674.548ENSEBUG00000013782pabpc49973.913Eptatretus_burgeri
ENSAMXG00000018779pabpc49872.364ENSEBUG00000000992pabpc49972.045Eptatretus_burgeri
ENSAMXG00000018779pabpc49976.515ENSEASG00005014119PABPC49975.909Equus_asinus_asinus
ENSAMXG00000018779pabpc49976.515ENSECAG00000009396PABPC49975.909Equus_caballus
ENSAMXG00000018779pabpc49874.962ENSEEUG00000002962PABPC49974.242Erinaceus_europaeus
ENSAMXG00000018779pabpc49987.420ENSELUG00000003195pabpc49986.499Esox_lucius
ENSAMXG00000018779pabpc49979.873ENSFCAG00000015254-9979.081Felis_catus
ENSAMXG00000018779pabpc49982.334ENSFALG00000000543PABPC410081.703Ficedula_albicollis
ENSAMXG00000018779pabpc48848.983ENSFDAG00000010581-9948.545Fukomys_damarensis
ENSAMXG00000018779pabpc49975.758ENSFDAG00000020016-9975.606Fukomys_damarensis
ENSAMXG00000018779pabpc49986.371ENSFHEG00000007548pabpc49986.371Fundulus_heteroclitus
ENSAMXG00000018779pabpc410083.491ENSGMOG00000019025pabpc49983.491Gadus_morhua
ENSAMXG00000018779pabpc49982.726ENSGALG00000003800PABPC49982.092Gallus_gallus
ENSAMXG00000018779pabpc49986.465ENSGAFG00000018195pabpc49898.333Gambusia_affinis
ENSAMXG00000018779pabpc49984.177ENSGACG00000007179pabpc49984.177Gasterosteus_aculeatus
ENSAMXG00000018779pabpc49982.177ENSGAGG00000001888PABPC410081.546Gopherus_agassizii
ENSAMXG00000018779pabpc49979.556ENSGGOG00000004002PABPC49978.922Gorilla_gorilla
ENSAMXG00000018779pabpc49986.846ENSHBUG00000020206pabpc49986.846Haplochromis_burtoni
ENSAMXG00000018779pabpc49979.873ENSHGLG00000011162PABPC49979.081Heterocephalus_glaber_female
ENSAMXG00000018779pabpc49979.873ENSHGLG00100001580PABPC49979.081Heterocephalus_glaber_male
ENSAMXG00000018779pabpc49984.786ENSHCOG00000012694pabpc49985.737Hippocampus_comes
ENSAMXG00000018779pabpc49888.889ENSIPUG00000016620pabpc410088.189Ictalurus_punctatus
ENSAMXG00000018779pabpc49981.281ENSSTOG00000010416PABPC49980.624Ictidomys_tridecemlineatus
ENSAMXG00000018779pabpc49977.833ENSJJAG00000007781Pabpc49977.377Jaculus_jaculus
ENSAMXG00000018779pabpc49985.127ENSKMAG00000013597pabpc49985.127Kryptolebias_marmoratus
ENSAMXG00000018779pabpc410085.446ENSLBEG00000013654pabpc410085.446Labrus_bergylta
ENSAMXG00000018779pabpc49982.418ENSLACG00000011907PABPC410081.947Latimeria_chalumnae
ENSAMXG00000018779pabpc410086.164ENSLOCG00000001877pabpc410086.164Lepisosteus_oculatus
ENSAMXG00000018779pabpc49979.299ENSLAFG00000000151PABPC49978.503Loxodonta_africana
ENSAMXG00000018779pabpc49979.556ENSMFAG00000041481PABPC49978.922Macaca_fascicularis
ENSAMXG00000018779pabpc49976.364ENSMMUG00000007497PABPC49975.758Macaca_mulatta
ENSAMXG00000018779pabpc49979.556ENSMNEG00000043054PABPC49978.922Macaca_nemestrina
ENSAMXG00000018779pabpc49979.556ENSMLEG00000040716PABPC49978.922Mandrillus_leucophaeus
ENSAMXG00000018779pabpc49893.576ENSMAMG00000010025pabpc49992.821Mastacembelus_armatus
ENSAMXG00000018779pabpc49987.005ENSMZEG00005006141pabpc49987.005Maylandia_zebra
ENSAMXG00000018779pabpc49877.665ENSMGAG00000005408PABPC410077.119Meleagris_gallopavo
ENSAMXG00000018779pabpc47591.398ENSMAUG00000019763-8387.500Mesocricetus_auratus
ENSAMXG00000018779pabpc46780.473ENSMAUG00000001295-9779.290Mesocricetus_auratus
ENSAMXG00000018779pabpc45580.702ENSMAUG00000004089-8982.635Mesocricetus_auratus
ENSAMXG00000018779pabpc48877.897ENSMICG00000016633-10077.442Microcebus_murinus
ENSAMXG00000018779pabpc49869.120ENSMICG00000036729-10067.736Microcebus_murinus
ENSAMXG00000018779pabpc49979.650ENSMOCG00000006763Pabpc49978.493Microtus_ochrogaster
ENSAMXG00000018779pabpc49982.884ENSMMOG00000002363pabpc49981.476Mola_mola
ENSAMXG00000018779pabpc45868.232ENSMODG00000018051-9668.232Monodelphis_domestica
ENSAMXG00000018779pabpc46381.633ENSMODG00000019847-6881.633Monodelphis_domestica
ENSAMXG00000018779pabpc49877.932ENSMODG00000017657-10076.970Monodelphis_domestica
ENSAMXG00000018779pabpc49886.538ENSMALG00000011017pabpc49985.940Monopterus_albus
ENSAMXG00000018779pabpc49975.495MGP_CAROLIEiJ_G0026435-10097.163Mus_caroli
ENSAMXG00000018779pabpc49963.300MGP_CAROLIEiJ_G0024864-9967.145Mus_caroli
ENSAMXG00000018779pabpc49979.556ENSMUSG00000011257Pabpc410095.858Mus_musculus
ENSAMXG00000018779pabpc49875.385MGP_PahariEiJ_G0028765Pabpc410097.872Mus_pahari
ENSAMXG00000018779pabpc49870.341MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSAMXG00000018779pabpc49545.973ENSMPUG00000006836-10045.623Mustela_putorius_furo
ENSAMXG00000018779pabpc49976.515ENSMPUG00000014414-9975.909Mustela_putorius_furo
ENSAMXG00000018779pabpc49979.299ENSMLUG00000012068PABPC49978.503Myotis_lucifugus
ENSAMXG00000018779pabpc49978.956ENSNGAG00000018292Pabpc49978.503Nannospalax_galili
ENSAMXG00000018779pabpc46292.701ENSNBRG00000010047-7292.701Neolamprologus_brichardi
ENSAMXG00000018779pabpc46298.077ENSNBRG00000009708pabpc49898.077Neolamprologus_brichardi
ENSAMXG00000018779pabpc49979.556ENSNLEG00000011928PABPC49978.922Nomascus_leucogenys
ENSAMXG00000018779pabpc48490.476ENSOPRG00000011984PABPC48690.476Ochotona_princeps
ENSAMXG00000018779pabpc49979.715ENSODEG00000006592-9978.922Octodon_degus
ENSAMXG00000018779pabpc49868.499ENSODEG00000017434-9967.585Octodon_degus
ENSAMXG00000018779pabpc49987.005ENSONIG00000008176pabpc49987.005Oreochromis_niloticus
ENSAMXG00000018779pabpc49981.804ENSOANG00000010001PABPC49981.171Ornithorhynchus_anatinus
ENSAMXG00000018779pabpc49575.629ENSOCUG00000000562PABPC48875.786Oryctolagus_cuniculus
ENSAMXG00000018779pabpc49885.048ENSORLG00000017479pabpc49984.652Oryzias_latipes
ENSAMXG00000018779pabpc49885.370ENSORLG00020018644pabpc49984.810Oryzias_latipes_hni
ENSAMXG00000018779pabpc49885.370ENSORLG00015015042pabpc49984.810Oryzias_latipes_hsok
ENSAMXG00000018779pabpc49885.370ENSOMEG00000014410pabpc49984.810Oryzias_melastigma
ENSAMXG00000018779pabpc49976.308ENSOGAG00000004067PABPC49976.971Otolemur_garnettii
ENSAMXG00000018779pabpc49976.515ENSOARG00000020060PABPC49975.909Ovis_aries
ENSAMXG00000018779pabpc49979.556ENSPPAG00000043625PABPC49978.922Pan_paniscus
ENSAMXG00000018779pabpc49979.873ENSPPRG00000024727PABPC49979.081Panthera_pardus
ENSAMXG00000018779pabpc49979.873ENSPTIG00000005829PABPC49979.081Panthera_tigris_altaica
ENSAMXG00000018779pabpc49979.556ENSPTRG00000000573PABPC49978.922Pan_troglodytes
ENSAMXG00000018779pabpc49979.556ENSPANG00000009484PABPC49978.922Papio_anubis
ENSAMXG00000018779pabpc49986.772ENSPKIG00000025356pabpc49986.772Paramormyrops_kingsleyae
ENSAMXG00000018779pabpc49982.650ENSPSIG00000016892PABPC410082.019Pelodiscus_sinensis
ENSAMXG00000018779pabpc49982.063ENSPMGG00000009073pabpc49982.063Periophthalmus_magnuspinnatus
ENSAMXG00000018779pabpc49974.729ENSPEMG00000024193-10074.611Peromyscus_maniculatus_bairdii
ENSAMXG00000018779pabpc49978.931ENSPEMG00000023569-10078.302Peromyscus_maniculatus_bairdii
ENSAMXG00000018779pabpc48769.474ENSPMAG00000002836pabpc49970.351Petromyzon_marinus
ENSAMXG00000018779pabpc49565.567ENSPMAG00000007885pabpc49965.130Petromyzon_marinus
ENSAMXG00000018779pabpc49685.273ENSPCIG00000020674PABPC410085.680Phascolarctos_cinereus
ENSAMXG00000018779pabpc49985.420ENSPFOG00000002682pabpc49986.054Poecilia_formosa
ENSAMXG00000018779pabpc49985.420ENSPLAG00000010112pabpc49986.054Poecilia_latipinna
ENSAMXG00000018779pabpc49886.174ENSPMEG00000019739pabpc49986.212Poecilia_mexicana
ENSAMXG00000018779pabpc49986.529ENSPREG00000001589pabpc49986.529Poecilia_reticulata
ENSAMXG00000018779pabpc49976.364ENSPPYG00000001506PABPC49975.758Pongo_abelii
ENSAMXG00000018779pabpc49971.970ENSPCAG00000003341PABPC49971.364Procavia_capensis
ENSAMXG00000018779pabpc48382.178ENSPCOG00000025882-9682.178Propithecus_coquereli
ENSAMXG00000018779pabpc49978.956ENSPCOG00000023725-9978.797Propithecus_coquereli
ENSAMXG00000018779pabpc49774.536ENSPVAG00000002187PABPC49973.862Pteropus_vampyrus
ENSAMXG00000018779pabpc49987.005ENSPNYG00000006134pabpc49987.005Pundamilia_nyererei
ENSAMXG00000018779pabpc410090.709ENSPNAG00000024355pabpc410090.709Pygocentrus_nattereri
ENSAMXG00000018779pabpc49975.116ENSRNOG00000028592AABR07035074.19975.428Rattus_norvegicus
ENSAMXG00000018779pabpc49976.227ENSRNOG00000015642Pabpc49977.019Rattus_norvegicus
ENSAMXG00000018779pabpc49979.556ENSRBIG00000039761PABPC49978.922Rhinopithecus_bieti
ENSAMXG00000018779pabpc49979.556ENSRROG00000033355PABPC49978.922Rhinopithecus_roxellana
ENSAMXG00000018779pabpc49979.841ENSSBOG00000026193PABPC49979.206Saimiri_boliviensis_boliviensis
ENSAMXG00000018779pabpc49881.029ENSSHAG00000018139PABPC410079.968Sarcophilus_harrisii
ENSAMXG00000018779pabpc49986.111ENSSFOG00015023514pabpc410086.111Scleropages_formosus
ENSAMXG00000018779pabpc49985.215ENSSMAG00000009007pabpc49985.215Scophthalmus_maximus
ENSAMXG00000018779pabpc49886.656ENSSDUG00000012683pabpc49986.054Seriola_dumerili
ENSAMXG00000018779pabpc49886.656ENSSLDG00000013025pabpc49986.054Seriola_lalandi_dorsalis
ENSAMXG00000018779pabpc49969.605ENSSARG00000000310PABPC49968.997Sorex_araneus
ENSAMXG00000018779pabpc49981.458ENSSPUG00000003204PABPC410080.824Sphenodon_punctatus
ENSAMXG00000018779pabpc49886.817ENSSPAG00000009252pabpc49986.054Stegastes_partitus
ENSAMXG00000018779pabpc48744.796ENSSSCG00000036170-9544.981Sus_scrofa
ENSAMXG00000018779pabpc49979.873ENSSSCG00000003660-9979.081Sus_scrofa
ENSAMXG00000018779pabpc49977.895ENSTGUG00000001266PABPC410077.744Taeniopygia_guttata
ENSAMXG00000018779pabpc49985.261ENSTRUG00000005907pabpc49985.261Takifugu_rubripes
ENSAMXG00000018779pabpc49979.173ENSTNIG00000016902pabpc49978.855Tetraodon_nigroviridis
ENSAMXG00000018779pabpc49867.513ENSTBEG00000009035PABPC49966.836Tupaia_belangeri
ENSAMXG00000018779pabpc49867.972ENSTTRG00000014340PABPC49966.491Tursiops_truncatus
ENSAMXG00000018779pabpc49979.715ENSUAMG00000000303PABPC49978.922Ursus_americanus
ENSAMXG00000018779pabpc49982.579ENSUMAG00000019585PABPC410088.235Ursus_maritimus
ENSAMXG00000018779pabpc47166.667ENSVPAG00000010041PABPC47361.176Vicugna_pacos
ENSAMXG00000018779pabpc49979.873ENSVVUG00000005215PABPC49979.081Vulpes_vulpes
ENSAMXG00000018779pabpc46398.182ENSXETG00000027221-9898.182Xenopus_tropicalis
ENSAMXG00000018779pabpc49978.889ENSXETG00000010946pabpc49978.254Xenopus_tropicalis
ENSAMXG00000018779pabpc49983.245ENSXCOG00000013190pabpc49294.118Xiphophorus_couchianus
ENSAMXG00000018779pabpc49986.371ENSXMAG00000019007pabpc49986.371Xiphophorus_maculatus

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