EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018789 (Gene tree)
Gene ID: 103026931
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 24620 bases
Position: chrAPWO02000046.1:5364767-5389386
Accession: 103026931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000019350	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSAMXP00000019351	MMR_HSR1	PF01926.23	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000019350	-	1949	XM_022665067	ENSAMXP00000019350	522 (aa)	XP_022520788	W5LHN8
ENSAMXT00000019351	-	1913	XM_015601016	ENSAMXP00000019351	510 (aa)	XP_015456502	W5LHN9

Gene Model

Click here to download ENSAMXG00000018789's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018789's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018789	srl	75	30.591	ENSAMXG00000013748	ehd2a	67	30.591
ENSAMXG00000018789	srl	82	77.327	ENSAMXG00000038693	SRL	99	73.673
ENSAMXG00000018789	srl	80	32.282	ENSAMXG00000008348	ehd4	72	32.282
ENSAMXG00000018789	srl	76	30.928	ENSAMXG00000039344	ehd1a	70	30.928
ENSAMXG00000018789	srl	76	31.234	ENSAMXG00000042972	ehd3	76	32.208
ENSAMXG00000018789	srl	81	30.332	ENSAMXG00000031892	-	74	31.220

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018789	srl	86	84.127	ENSG00000185739	SRL	98	85.106	Homo_sapiens
ENSAMXG00000018789	srl	86	77.778	ENSAPOG00000012432	SRL	98	77.778	Acanthochromis_polyacanthus
ENSAMXG00000018789	srl	92	92.340	ENSAPOG00000018093	srl	99	93.864	Acanthochromis_polyacanthus
ENSAMXG00000018789	srl	89	82.018	ENSAMEG00000010862	SRL	51	82.018	Ailuropoda_melanoleuca
ENSAMXG00000018789	srl	88	75.839	ENSACIG00000015419	SRL	99	75.839	Amphilophus_citrinellus
ENSAMXG00000018789	srl	88	92.905	ENSACIG00000015799	srl	100	92.905	Amphilophus_citrinellus
ENSAMXG00000018789	srl	86	77.828	ENSAOCG00000017049	SRL	96	78.054	Amphiprion_ocellaris
ENSAMXG00000018789	srl	85	94.457	ENSAOCG00000007574	srl	99	94.457	Amphiprion_ocellaris
ENSAMXG00000018789	srl	86	74.150	ENSAPEG00000006533	SRL	96	75.339	Amphiprion_percula
ENSAMXG00000018789	srl	92	92.739	ENSAPEG00000006911	srl	99	92.739	Amphiprion_percula
ENSAMXG00000018789	srl	92	92.531	ENSATEG00000024315	srl	99	92.531	Anabas_testudineus
ENSAMXG00000018789	srl	86	77.313	ENSATEG00000009643	SRL	52	77.533	Anabas_testudineus
ENSAMXG00000018789	srl	93	80.041	ENSACAG00000016380	SRL	90	80.448	Anolis_carolinensis
ENSAMXG00000018789	srl	92	92.308	ENSACLG00000027685	srl	99	92.308	Astatotilapia_calliptera
ENSAMXG00000018789	srl	88	74.242	ENSACLG00000024674	SRL	54	77.694	Astatotilapia_calliptera
ENSAMXG00000018789	srl	87	83.559	ENSBTAG00000001078	SRL	56	83.559	Bos_taurus
ENSAMXG00000018789	srl	86	84.127	ENSCJAG00000019750	SRL	99	80.508	Callithrix_jacchus
ENSAMXG00000018789	srl	87	83.108	ENSCAFG00000019233	SRL	83	83.108	Canis_familiaris
ENSAMXG00000018789	srl	87	83.108	ENSCAFG00020025024	SRL	55	83.108	Canis_lupus_dingo
ENSAMXG00000018789	srl	89	82.456	ENSCHIG00000017927	SRL	55	83.559	Capra_hircus
ENSAMXG00000018789	srl	92	81.568	ENSTSYG00000007919	SRL	98	85.816	Carlito_syrichta
ENSAMXG00000018789	srl	86	83.220	ENSCPOG00000012643	SRL	99	79.618	Cavia_porcellus
ENSAMXG00000018789	srl	86	78.685	ENSCCAG00000032646	SRL	99	85.185	Cebus_capucinus
ENSAMXG00000018789	srl	87	83.559	ENSCATG00000032227	-	99	80.508	Cercocebus_atys
ENSAMXG00000018789	srl	86	83.220	ENSCLAG00000016242	SRL	99	79.618	Chinchilla_lanigera
ENSAMXG00000018789	srl	75	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSAMXG00000018789	srl	88	86.269	ENSCPBG00000026371	SRL	99	81.366	Chrysemys_picta_bellii
ENSAMXG00000018789	srl	82	60.911	ENSCING00000005231	-	93	60.911	Ciona_intestinalis
ENSAMXG00000018789	srl	86	84.127	ENSCANG00000035872	SRL	98	85.106	Colobus_angolensis_palliatus
ENSAMXG00000018789	srl	87	83.559	ENSCGRG00001016630	Srl	99	81.370	Cricetulus_griseus_chok1gshd
ENSAMXG00000018789	srl	87	83.559	ENSCGRG00000005458	Srl	99	81.370	Cricetulus_griseus_crigri
ENSAMXG00000018789	srl	92	72.939	ENSCSEG00000011866	SRL	95	73.150	Cynoglossus_semilaevis
ENSAMXG00000018789	srl	92	90.871	ENSCSEG00000016151	srl	100	90.871	Cynoglossus_semilaevis
ENSAMXG00000018789	srl	92	90.249	ENSCVAG00000003513	srl	100	90.249	Cyprinodon_variegatus
ENSAMXG00000018789	srl	88	75.922	ENSCVAG00000022465	SRL	61	75.922	Cyprinodon_variegatus
ENSAMXG00000018789	srl	92	94.191	ENSDARG00000104587	srl	100	94.191	Danio_rerio
ENSAMXG00000018789	srl	74	79.373	ENSDARG00000112959	CABZ01072309.1	99	79.373	Danio_rerio
ENSAMXG00000018789	srl	87	83.333	ENSDNOG00000011643	SRL	53	83.333	Dasypus_novemcinctus
ENSAMXG00000018789	srl	86	83.900	ENSDORG00000014807	Srl	99	80.467	Dipodomys_ordii
ENSAMXG00000018789	srl	72	66.133	ENSEBUG00000015937	srl	95	66.133	Eptatretus_burgeri
ENSAMXG00000018789	srl	87	83.784	ENSEASG00005000942	SRL	53	83.784	Equus_asinus_asinus
ENSAMXG00000018789	srl	92	81.356	ENSECAG00000024219	SRL	99	81.356	Equus_caballus
ENSAMXG00000018789	srl	92	86.037	ENSELUG00000015616	srl	100	86.037	Esox_lucius
ENSAMXG00000018789	srl	92	79.747	ENSFCAG00000022075	SRL	99	80.297	Felis_catus
ENSAMXG00000018789	srl	88	81.111	ENSFALG00000004328	SRL	64	81.250	Ficedula_albicollis
ENSAMXG00000018789	srl	86	84.127	ENSFDAG00000006199	SRL	99	80.679	Fukomys_damarensis
ENSAMXG00000018789	srl	92	89.419	ENSFHEG00000011239	srl	100	89.419	Fundulus_heteroclitus
ENSAMXG00000018789	srl	92	73.292	ENSFHEG00000011854	SRL	99	76.404	Fundulus_heteroclitus
ENSAMXG00000018789	srl	87	90.728	ENSGMOG00000014954	srl	99	90.728	Gadus_morhua
ENSAMXG00000018789	srl	91	80.994	ENSGALG00000038884	SRL	98	80.994	Gallus_gallus
ENSAMXG00000018789	srl	92	90.456	ENSGAFG00000000010	srl	100	90.456	Gambusia_affinis
ENSAMXG00000018789	srl	88	77.455	ENSGAFG00000016984	SRL	99	77.455	Gambusia_affinis
ENSAMXG00000018789	srl	87	92.967	ENSGACG00000011332	srl	100	92.967	Gasterosteus_aculeatus
ENSAMXG00000018789	srl	87	83.559	ENSGGOG00000011312	-	99	80.932	Gorilla_gorilla
ENSAMXG00000018789	srl	92	92.308	ENSHBUG00000007581	srl	99	92.308	Haplochromis_burtoni
ENSAMXG00000018789	srl	89	73.932	ENSHBUG00000015710	SRL	57	74.675	Haplochromis_burtoni
ENSAMXG00000018789	srl	86	84.354	ENSHGLG00000015271	SRL	99	80.679	Heterocephalus_glaber_female
ENSAMXG00000018789	srl	86	84.354	ENSHGLG00100019378	SRL	99	80.679	Heterocephalus_glaber_male
ENSAMXG00000018789	srl	93	90.612	ENSHCOG00000008687	srl	99	92.188	Hippocampus_comes
ENSAMXG00000018789	srl	86	75.717	ENSHCOG00000001012	SRL	50	75.717	Hippocampus_comes
ENSAMXG00000018789	srl	85	69.495	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSAMXG00000018789	srl	92	93.996	ENSIPUG00000012513	srl	100	93.996	Ictalurus_punctatus
ENSAMXG00000018789	srl	87	83.108	ENSSTOG00000021151	-	99	80.042	Ictidomys_tridecemlineatus
ENSAMXG00000018789	srl	92	80.042	ENSJJAG00000016400	Srl	99	80.042	Jaculus_jaculus
ENSAMXG00000018789	srl	86	78.182	ENSKMAG00000019537	SRL	99	78.182	Kryptolebias_marmoratus
ENSAMXG00000018789	srl	90	89.831	ENSKMAG00000014115	srl	93	93.112	Kryptolebias_marmoratus
ENSAMXG00000018789	srl	92	91.507	ENSLBEG00000026643	srl	100	91.507	Labrus_bergylta
ENSAMXG00000018789	srl	86	77.778	ENSLBEG00000013811	SRL	95	78.005	Labrus_bergylta
ENSAMXG00000018789	srl	92	83.023	ENSLACG00000002825	SRL	100	83.023	Latimeria_chalumnae
ENSAMXG00000018789	srl	91	89.056	ENSLOCG00000002644	srl	99	89.056	Lepisosteus_oculatus
ENSAMXG00000018789	srl	86	83.447	ENSLAFG00000006329	SRL	50	83.447	Loxodonta_africana
ENSAMXG00000018789	srl	83	85.106	ENSMFAG00000037383	SRL	98	85.106	Macaca_fascicularis
ENSAMXG00000018789	srl	91	81.385	ENSMNEG00000019236	-	97	81.385	Macaca_nemestrina
ENSAMXG00000018789	srl	86	77.098	ENSMLEG00000032156	SRL	99	73.941	Mandrillus_leucophaeus
ENSAMXG00000018789	srl	92	90.812	ENSMAMG00000023322	srl	99	90.832	Mastacembelus_armatus
ENSAMXG00000018789	srl	86	76.380	ENSMAMG00000013756	SRL	53	76.821	Mastacembelus_armatus
ENSAMXG00000018789	srl	92	92.308	ENSMZEG00005004548	srl	99	92.308	Maylandia_zebra
ENSAMXG00000018789	srl	89	73.718	ENSMZEG00005004010	SRL	58	74.459	Maylandia_zebra
ENSAMXG00000018789	srl	89	80.440	ENSMGAG00000009342	SRL	95	84.350	Meleagris_gallopavo
ENSAMXG00000018789	srl	87	84.163	ENSMICG00000032307	SRL	99	81.144	Microcebus_murinus
ENSAMXG00000018789	srl	92	80.042	ENSMOCG00000008208	Srl	99	80.042	Microtus_ochrogaster
ENSAMXG00000018789	srl	88	91.778	ENSMMOG00000013970	srl	100	91.778	Mola_mola
ENSAMXG00000018789	srl	87	76.149	ENSMMOG00000021572	SRL	99	76.211	Mola_mola
ENSAMXG00000018789	srl	88	82.667	ENSMODG00000016380	-	51	82.667	Monodelphis_domestica
ENSAMXG00000018789	srl	82	77.512	ENSMALG00000000670	SRL	98	77.512	Monopterus_albus
ENSAMXG00000018789	srl	92	89.574	ENSMALG00000005039	srl	98	92.325	Monopterus_albus
ENSAMXG00000018789	srl	87	83.559	MGP_CAROLIEiJ_G0020400	Srl	99	80.679	Mus_caroli
ENSAMXG00000018789	srl	87	83.559	ENSMUSG00000022519	Srl	99	80.679	Mus_musculus
ENSAMXG00000018789	srl	87	83.559	MGP_SPRETEiJ_G0021294	Srl	99	80.679	Mus_spretus
ENSAMXG00000018789	srl	87	83.108	ENSMPUG00000015025	SRL	54	83.108	Mustela_putorius_furo
ENSAMXG00000018789	srl	87	83.784	ENSMLUG00000030733	SRL	56	83.784	Myotis_lucifugus
ENSAMXG00000018789	srl	86	84.127	ENSNGAG00000019741	Srl	99	80.467	Nannospalax_galili
ENSAMXG00000018789	srl	92	92.111	ENSNBRG00000023775	srl	99	92.111	Neolamprologus_brichardi
ENSAMXG00000018789	srl	89	73.718	ENSNBRG00000002422	SRL	56	76.102	Neolamprologus_brichardi
ENSAMXG00000018789	srl	86	78.458	ENSNLEG00000029051	SRL	99	75.000	Nomascus_leucogenys
ENSAMXG00000018789	srl	90	75.599	ENSOPRG00000000477	-	54	75.599	Ochotona_princeps
ENSAMXG00000018789	srl	86	83.673	ENSODEG00000013256	SRL	99	80.042	Octodon_degus
ENSAMXG00000018789	srl	92	92.100	ENSONIG00000005192	srl	99	92.100	Oreochromis_niloticus
ENSAMXG00000018789	srl	87	76.072	ENSORLG00000015064	SRL	97	76.072	Oryzias_latipes
ENSAMXG00000018789	srl	95	89.940	ENSORLG00000008291	srl	99	89.940	Oryzias_latipes
ENSAMXG00000018789	srl	87	76.298	ENSORLG00020018173	SRL	97	76.298	Oryzias_latipes_hni
ENSAMXG00000018789	srl	98	88.431	ENSORLG00020019784	srl	90	88.431	Oryzias_latipes_hni
ENSAMXG00000018789	srl	87	76.298	ENSORLG00015019063	SRL	97	76.298	Oryzias_latipes_hsok
ENSAMXG00000018789	srl	95	89.537	ENSORLG00015009342	srl	100	89.095	Oryzias_latipes_hsok
ENSAMXG00000018789	srl	89	73.333	ENSOMEG00000005682	SRL	53	74.561	Oryzias_melastigma
ENSAMXG00000018789	srl	92	91.060	ENSOMEG00000010006	srl	98	92.727	Oryzias_melastigma
ENSAMXG00000018789	srl	87	82.883	ENSOGAG00000029266	SRL	54	82.883	Otolemur_garnettii
ENSAMXG00000018789	srl	89	82.456	ENSOARG00000003074	SRL	57	82.456	Ovis_aries
ENSAMXG00000018789	srl	87	83.559	ENSPPAG00000024919	-	98	85.106	Pan_paniscus
ENSAMXG00000018789	srl	92	79.747	ENSPPRG00000010274	SRL	98	85.036	Panthera_pardus
ENSAMXG00000018789	srl	92	79.747	ENSPTIG00000015162	SRL	98	85.036	Panthera_tigris_altaica
ENSAMXG00000018789	srl	87	83.559	ENSPTRG00000007712	SRL	98	85.106	Pan_troglodytes
ENSAMXG00000018789	srl	92	80.983	ENSPANG00000013804	SRL	99	80.983	Papio_anubis
ENSAMXG00000018789	srl	92	92.797	ENSPKIG00000006405	srl	99	92.797	Paramormyrops_kingsleyae
ENSAMXG00000018789	srl	97	77.912	ENSPKIG00000024974	SRL	98	77.912	Paramormyrops_kingsleyae
ENSAMXG00000018789	srl	89	81.978	ENSPSIG00000008586	SRL	51	81.978	Pelodiscus_sinensis
ENSAMXG00000018789	srl	87	76.697	ENSPMGG00000023505	-	99	76.697	Periophthalmus_magnuspinnatus
ENSAMXG00000018789	srl	88	91.574	ENSPMGG00000021081	srl	97	91.574	Periophthalmus_magnuspinnatus
ENSAMXG00000018789	srl	86	83.900	ENSPEMG00000015842	Srl	99	80.892	Peromyscus_maniculatus_bairdii
ENSAMXG00000018789	srl	82	68.276	ENSPMAG00000004786	srl	99	68.276	Petromyzon_marinus
ENSAMXG00000018789	srl	88	82.743	ENSPCIG00000012128	SRL	99	82.743	Phascolarctos_cinereus
ENSAMXG00000018789	srl	97	88.317	ENSPFOG00000011408	srl	100	88.317	Poecilia_formosa
ENSAMXG00000018789	srl	90	90.393	ENSPLAG00000008017	srl	99	90.393	Poecilia_latipinna
ENSAMXG00000018789	srl	88	75.446	ENSPLAG00000002932	SRL	99	75.446	Poecilia_latipinna
ENSAMXG00000018789	srl	88	74.026	ENSPMEG00000005890	SRL	60	74.026	Poecilia_mexicana
ENSAMXG00000018789	srl	97	88.032	ENSPMEG00000006745	srl	99	90.393	Poecilia_mexicana
ENSAMXG00000018789	srl	97	88.515	ENSPREG00000007751	srl	99	91.556	Poecilia_reticulata
ENSAMXG00000018789	srl	88	76.562	ENSPREG00000000315	SRL	99	76.562	Poecilia_reticulata
ENSAMXG00000018789	srl	82	85.407	ENSPPYG00000007053	SRL	97	85.407	Pongo_abelii
ENSAMXG00000018789	srl	88	82.483	ENSPCAG00000003378	-	51	82.483	Procavia_capensis
ENSAMXG00000018789	srl	87	83.710	ENSPCOG00000023135	SRL	98	85.106	Propithecus_coquereli
ENSAMXG00000018789	srl	87	83.559	ENSPVAG00000006586	SRL	55	83.559	Pteropus_vampyrus
ENSAMXG00000018789	srl	92	92.516	ENSPNYG00000001200	srl	99	92.516	Pundamilia_nyererei
ENSAMXG00000018789	srl	89	73.718	ENSPNYG00000003423	SRL	57	74.459	Pundamilia_nyererei
ENSAMXG00000018789	srl	86	76.364	ENSPNAG00000007361	-	91	76.364	Pygocentrus_nattereri
ENSAMXG00000018789	srl	92	95.436	ENSPNAG00000023106	srl	100	95.436	Pygocentrus_nattereri
ENSAMXG00000018789	srl	86	84.127	ENSSBOG00000029273	SRL	99	80.508	Saimiri_boliviensis_boliviensis
ENSAMXG00000018789	srl	89	82.159	ENSSHAG00000011715	-	51	82.444	Sarcophilus_harrisii
ENSAMXG00000018789	srl	92	91.925	ENSSFOG00015009773	srl	99	92.060	Scleropages_formosus
ENSAMXG00000018789	srl	86	76.652	ENSSMAG00000002232	SRL	50	76.652	Scophthalmus_maximus
ENSAMXG00000018789	srl	92	91.494	ENSSMAG00000016274	srl	100	91.720	Scophthalmus_maximus
ENSAMXG00000018789	srl	87	78.174	ENSSDUG00000009161	SRL	98	78.174	Seriola_dumerili
ENSAMXG00000018789	srl	87	93.228	ENSSDUG00000010808	srl	98	93.228	Seriola_dumerili
ENSAMXG00000018789	srl	87	77.802	ENSSLDG00000014601	SRL	99	78.022	Seriola_lalandi_dorsalis
ENSAMXG00000018789	srl	89	92.473	ENSSLDG00000022024	srl	99	91.268	Seriola_lalandi_dorsalis
ENSAMXG00000018789	srl	88	82.340	ENSSPUG00000016859	SRL	99	82.340	Sphenodon_punctatus
ENSAMXG00000018789	srl	92	91.925	ENSSPAG00000019105	srl	99	91.925	Stegastes_partitus
ENSAMXG00000018789	srl	86	78.636	ENSSPAG00000014254	SRL	98	78.636	Stegastes_partitus
ENSAMXG00000018789	srl	89	83.077	ENSSSCG00000007949	SRL	98	84.807	Sus_scrofa
ENSAMXG00000018789	srl	71	85.635	ENSTGUG00000016121	-	100	85.635	Taeniopygia_guttata
ENSAMXG00000018789	srl	89	81.057	ENSTGUG00000003951	-	99	81.057	Taeniopygia_guttata
ENSAMXG00000018789	srl	82	79.665	ENSTRUG00000013310	SRL	55	79.665	Takifugu_rubripes
ENSAMXG00000018789	srl	92	90.871	ENSTRUG00000006005	srl	100	90.871	Takifugu_rubripes
ENSAMXG00000018789	srl	89	91.850	ENSTNIG00000009739	srl	100	90.000	Tetraodon_nigroviridis
ENSAMXG00000018789	srl	88	81.758	ENSUAMG00000005701	SRL	56	81.758	Ursus_americanus
ENSAMXG00000018789	srl	88	81.978	ENSUMAG00000002574	SRL	56	81.978	Ursus_maritimus
ENSAMXG00000018789	srl	92	79.915	ENSXETG00000017313	srl	99	82.366	Xenopus_tropicalis
ENSAMXG00000018789	srl	83	92.637	ENSXCOG00000010424	srl	97	92.637	Xiphophorus_couchianus
ENSAMXG00000018789	srl	88	77.283	ENSXCOG00000014584	SRL	99	77.283	Xiphophorus_couchianus
ENSAMXG00000018789	srl	97	88.515	ENSXMAG00000004625	srl	100	88.515	Xiphophorus_maculatus
ENSAMXG00000018789	srl	88	74.675	ENSXMAG00000027598	SRL	63	75.108	Xiphophorus_maculatus