EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000018915 (Gene tree)
Gene ID: 103030076
Gene Symbol: POLR2E
Alias: RPABC1|RPB5|XAP4|hRPB25|hsRPB5
Full Name: RNA polymerase II subunit E
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5208 bases
Position: chr17:8777615-8782822
Accession: 103030076
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000019476	RNA_pol_Rpb5_N	PF03871.14	9.6e-35	1	1
ENSAMXP00000019476	RNA_pol_Rpb5_C	PF01191.19	1.2e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000019476	POLR2E-201	870	XM_022678846	ENSAMXP00000019476	210 (aa)	XP_022534567	W5LI14

Gene Model

Click here to download ENSAMXG00000018915's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03020	RNA polymerase	KEGG
amex04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018915's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018915	POLR2E	100	95.714	ENSG00000099817	POLR2E	100	95.714	Homo_sapiens
ENSAMXG00000018915	POLR2E	100	99.524	ENSAPOG00000002935	polr2eb	100	99.524	Acanthochromis_polyacanthus
ENSAMXG00000018915	POLR2E	100	96.190	ENSAMEG00000003159	POLR2E	100	96.190	Ailuropoda_melanoleuca
ENSAMXG00000018915	POLR2E	100	86.190	ENSACIG00000024371	polr2eb	100	86.190	Amphilophus_citrinellus
ENSAMXG00000018915	POLR2E	100	99.524	ENSAOCG00000018166	polr2eb	100	99.524	Amphiprion_ocellaris
ENSAMXG00000018915	POLR2E	100	99.524	ENSAPEG00000009000	polr2eb	100	99.524	Amphiprion_percula
ENSAMXG00000018915	POLR2E	100	99.524	ENSATEG00000023760	polr2eb	100	99.524	Anabas_testudineus
ENSAMXG00000018915	POLR2E	100	96.190	ENSANAG00000038488	POLR2E	100	96.190	Aotus_nancymaae
ENSAMXG00000018915	POLR2E	100	99.048	ENSACLG00000005254	polr2eb	100	99.048	Astatotilapia_calliptera
ENSAMXG00000018915	POLR2E	100	96.190	ENSBTAG00000020776	POLR2E	100	96.190	Bos_taurus
ENSAMXG00000018915	POLR2E	99	78.365	WBGene00019246	rpb-5	99	78.365	Caenorhabditis_elegans
ENSAMXG00000018915	POLR2E	67	91.429	ENSCJAG00000007666	-	77	91.429	Callithrix_jacchus
ENSAMXG00000018915	POLR2E	100	92.857	ENSCAFG00000019546	POLR2E	100	92.857	Canis_familiaris
ENSAMXG00000018915	POLR2E	100	96.190	ENSCAFG00020017111	POLR2E	100	96.190	Canis_lupus_dingo
ENSAMXG00000018915	POLR2E	100	96.190	ENSCHIG00000014151	POLR2E	100	96.190	Capra_hircus
ENSAMXG00000018915	POLR2E	100	78.605	ENSTSYG00000026377	POLR2E	100	78.605	Carlito_syrichta
ENSAMXG00000018915	POLR2E	91	95.833	ENSCAPG00000010843	POLR2E	93	95.833	Cavia_aperea
ENSAMXG00000018915	POLR2E	100	96.190	ENSCPOG00000001542	POLR2E	100	96.190	Cavia_porcellus
ENSAMXG00000018915	POLR2E	100	96.190	ENSCCAG00000025658	POLR2E	100	96.190	Cebus_capucinus
ENSAMXG00000018915	POLR2E	100	96.190	ENSCATG00000008926	POLR2E	100	96.190	Cercocebus_atys
ENSAMXG00000018915	POLR2E	100	95.714	ENSCLAG00000014874	-	100	95.714	Chinchilla_lanigera
ENSAMXG00000018915	POLR2E	98	73.171	ENSCLAG00000009238	-	100	73.171	Chinchilla_lanigera
ENSAMXG00000018915	POLR2E	100	96.190	ENSCSAG00000012336	POLR2E	100	96.190	Chlorocebus_sabaeus
ENSAMXG00000018915	POLR2E	100	96.667	ENSCPBG00000009702	POLR2E	100	96.667	Chrysemys_picta_bellii
ENSAMXG00000018915	POLR2E	100	85.714	ENSCING00000024933	-	99	85.714	Ciona_intestinalis
ENSAMXG00000018915	POLR2E	100	96.190	ENSCANG00000025560	POLR2E	100	96.190	Colobus_angolensis_palliatus
ENSAMXG00000018915	POLR2E	100	96.190	ENSCGRG00001022927	Polr2e	100	96.190	Cricetulus_griseus_chok1gshd
ENSAMXG00000018915	POLR2E	100	89.767	ENSCGRG00000016441	Polr2e	100	89.767	Cricetulus_griseus_crigri
ENSAMXG00000018915	POLR2E	100	97.619	ENSCSEG00000007107	polr2eb	92	97.619	Cynoglossus_semilaevis
ENSAMXG00000018915	POLR2E	100	99.524	ENSCVAG00000019940	polr2eb	100	99.524	Cyprinodon_variegatus
ENSAMXG00000018915	POLR2E	100	98.571	ENSDARG00000026183	polr2eb	100	98.571	Danio_rerio
ENSAMXG00000018915	POLR2E	90	95.789	ENSDNOG00000044994	POLR2E	84	95.789	Dasypus_novemcinctus
ENSAMXG00000018915	POLR2E	100	96.190	ENSDORG00000001154	Polr2e	100	96.190	Dipodomys_ordii
ENSAMXG00000018915	POLR2E	99	85.167	FBgn0033571	Rpb5	99	85.167	Drosophila_melanogaster
ENSAMXG00000018915	POLR2E	75	92.357	ENSEBUG00000010159	-	76	92.357	Eptatretus_burgeri
ENSAMXG00000018915	POLR2E	69	89.655	ENSEASG00005021615	POLR2E	67	83.951	Equus_asinus_asinus
ENSAMXG00000018915	POLR2E	91	94.764	ENSECAG00000011124	POLR2E	100	83.333	Equus_caballus
ENSAMXG00000018915	POLR2E	100	97.619	ENSELUG00000005815	POLR2E	100	97.619	Esox_lucius
ENSAMXG00000018915	POLR2E	100	96.667	ENSELUG00000020646	polr2e	100	96.667	Esox_lucius
ENSAMXG00000018915	POLR2E	100	95.714	ENSFCAG00000007318	POLR2E	100	95.714	Felis_catus
ENSAMXG00000018915	POLR2E	91	96.354	ENSFALG00000013986	POLR2E	99	96.354	Ficedula_albicollis
ENSAMXG00000018915	POLR2E	100	96.190	ENSFDAG00000014539	POLR2E	100	96.190	Fukomys_damarensis
ENSAMXG00000018915	POLR2E	100	99.524	ENSFHEG00000022398	polr2eb	100	99.524	Fundulus_heteroclitus
ENSAMXG00000018915	POLR2E	100	98.095	ENSGMOG00000007615	polr2eb	100	98.095	Gadus_morhua
ENSAMXG00000018915	POLR2E	100	96.667	ENSGALG00000002591	POLR2E	100	96.667	Gallus_gallus
ENSAMXG00000018915	POLR2E	100	99.048	ENSGAFG00000005087	polr2eb	100	99.048	Gambusia_affinis
ENSAMXG00000018915	POLR2E	100	98.095	ENSGACG00000013247	polr2eb	100	98.095	Gasterosteus_aculeatus
ENSAMXG00000018915	POLR2E	100	96.667	ENSGAGG00000008356	POLR2E	100	96.667	Gopherus_agassizii
ENSAMXG00000018915	POLR2E	100	96.190	ENSGGOG00000011267	POLR2E	100	96.190	Gorilla_gorilla
ENSAMXG00000018915	POLR2E	68	94.366	ENSHBUG00000011099	polr2eb	100	94.366	Haplochromis_burtoni
ENSAMXG00000018915	POLR2E	100	96.190	ENSHGLG00000013330	POLR2E	100	96.190	Heterocephalus_glaber_female
ENSAMXG00000018915	POLR2E	100	96.190	ENSHGLG00100011014	POLR2E	100	96.190	Heterocephalus_glaber_male
ENSAMXG00000018915	POLR2E	100	98.095	ENSHCOG00000000906	polr2eb	100	98.095	Hippocampus_comes
ENSAMXG00000018915	POLR2E	53	96.429	ENSHCOG00000012099	-	88	96.429	Hippocampus_comes
ENSAMXG00000018915	POLR2E	100	99.524	ENSIPUG00000019801	polr2e	100	99.524	Ictalurus_punctatus
ENSAMXG00000018915	POLR2E	100	96.190	ENSSTOG00000002853	POLR2E	100	96.190	Ictidomys_tridecemlineatus
ENSAMXG00000018915	POLR2E	100	96.190	ENSJJAG00000016595	-	100	96.190	Jaculus_jaculus
ENSAMXG00000018915	POLR2E	100	78.095	ENSJJAG00000003145	-	100	78.095	Jaculus_jaculus
ENSAMXG00000018915	POLR2E	77	78.882	ENSJJAG00000015812	-	100	78.882	Jaculus_jaculus
ENSAMXG00000018915	POLR2E	100	99.524	ENSKMAG00000005954	polr2eb	100	99.524	Kryptolebias_marmoratus
ENSAMXG00000018915	POLR2E	100	99.524	ENSLBEG00000024802	polr2eb	100	99.524	Labrus_bergylta
ENSAMXG00000018915	POLR2E	100	96.190	ENSLACG00000013686	POLR2E	100	96.190	Latimeria_chalumnae
ENSAMXG00000018915	POLR2E	77	99.383	ENSLOCG00000004599	POLR2E	100	99.383	Lepisosteus_oculatus
ENSAMXG00000018915	POLR2E	100	76.887	ENSLAFG00000025587	POLR2E	100	76.887	Loxodonta_africana
ENSAMXG00000018915	POLR2E	100	96.190	ENSMFAG00000002884	POLR2E	100	96.190	Macaca_fascicularis
ENSAMXG00000018915	POLR2E	100	96.190	ENSMMUG00000013927	POLR2E	100	96.190	Macaca_mulatta
ENSAMXG00000018915	POLR2E	100	64.929	ENSMNEG00000033452	-	100	64.929	Macaca_nemestrina
ENSAMXG00000018915	POLR2E	100	96.190	ENSMNEG00000034046	-	100	96.190	Macaca_nemestrina
ENSAMXG00000018915	POLR2E	92	79.275	ENSMLEG00000012405	POLR2E	94	79.275	Mandrillus_leucophaeus
ENSAMXG00000018915	POLR2E	100	99.524	ENSMAMG00000018703	polr2eb	100	99.524	Mastacembelus_armatus
ENSAMXG00000018915	POLR2E	90	98.947	ENSMZEG00005010796	polr2eb	96	98.947	Maylandia_zebra
ENSAMXG00000018915	POLR2E	100	95.735	ENSMGAG00000003769	POLR2E	100	95.735	Meleagris_gallopavo
ENSAMXG00000018915	POLR2E	92	95.337	ENSMAUG00000010125	-	100	95.812	Mesocricetus_auratus
ENSAMXG00000018915	POLR2E	100	65.238	ENSMAUG00000011003	-	100	65.238	Mesocricetus_auratus
ENSAMXG00000018915	POLR2E	100	96.190	ENSMICG00000013063	POLR2E	100	96.190	Microcebus_murinus
ENSAMXG00000018915	POLR2E	100	96.190	ENSMOCG00000013414	Polr2e	100	96.190	Microtus_ochrogaster
ENSAMXG00000018915	POLR2E	100	84.762	ENSMMOG00000001161	polr2eb	100	84.762	Mola_mola
ENSAMXG00000018915	POLR2E	91	88.482	ENSMMOG00000001167	polr2eb	88	88.482	Mola_mola
ENSAMXG00000018915	POLR2E	100	96.667	ENSMODG00000005494	POLR2E	100	96.667	Monodelphis_domestica
ENSAMXG00000018915	POLR2E	100	98.571	ENSMALG00000021888	polr2eb	100	98.571	Monopterus_albus
ENSAMXG00000018915	POLR2E	100	96.190	MGP_CAROLIEiJ_G0015561	Polr2e	100	96.190	Mus_caroli
ENSAMXG00000018915	POLR2E	100	96.190	ENSMUSG00000004667	Polr2e	100	96.190	Mus_musculus
ENSAMXG00000018915	POLR2E	100	96.190	MGP_PahariEiJ_G0030974	Polr2e	100	96.190	Mus_pahari
ENSAMXG00000018915	POLR2E	100	96.190	MGP_SPRETEiJ_G0016379	Polr2e	100	96.190	Mus_spretus
ENSAMXG00000018915	POLR2E	100	95.238	ENSMPUG00000008953	POLR2E	100	95.238	Mustela_putorius_furo
ENSAMXG00000018915	POLR2E	100	96.190	ENSMLUG00000013193	POLR2E	100	96.190	Myotis_lucifugus
ENSAMXG00000018915	POLR2E	66	90.580	ENSMLUG00000006376	-	100	79.630	Myotis_lucifugus
ENSAMXG00000018915	POLR2E	85	73.184	ENSNGAG00000017344	-	96	73.184	Nannospalax_galili
ENSAMXG00000018915	POLR2E	100	96.190	ENSNGAG00000001147	Polr2e	100	96.190	Nannospalax_galili
ENSAMXG00000018915	POLR2E	100	86.190	ENSNBRG00000022772	polr2eb	100	86.190	Neolamprologus_brichardi
ENSAMXG00000018915	POLR2E	100	92.417	ENSNLEG00000001207	-	100	92.417	Nomascus_leucogenys
ENSAMXG00000018915	POLR2E	100	73.810	ENSNLEG00000031364	-	100	73.810	Nomascus_leucogenys
ENSAMXG00000018915	POLR2E	100	84.762	ENSOPRG00000008331	POLR2E	100	84.762	Ochotona_princeps
ENSAMXG00000018915	POLR2E	100	69.524	ENSODEG00000011490	-	100	69.524	Octodon_degus
ENSAMXG00000018915	POLR2E	89	85.484	ENSODEG00000007985	-	100	85.484	Octodon_degus
ENSAMXG00000018915	POLR2E	100	96.190	ENSODEG00000013230	-	100	96.190	Octodon_degus
ENSAMXG00000018915	POLR2E	100	98.571	ENSONIG00000002519	polr2eb	100	98.571	Oreochromis_niloticus
ENSAMXG00000018915	POLR2E	100	99.048	ENSORLG00000015346	polr2eb	100	99.048	Oryzias_latipes
ENSAMXG00000018915	POLR2E	100	99.048	ENSORLG00020020700	polr2e	100	99.048	Oryzias_latipes_hni
ENSAMXG00000018915	POLR2E	100	99.048	ENSORLG00015016842	polr2e	100	99.048	Oryzias_latipes_hsok
ENSAMXG00000018915	POLR2E	100	99.524	ENSOMEG00000002709	polr2eb	100	99.524	Oryzias_melastigma
ENSAMXG00000018915	POLR2E	100	96.190	ENSOGAG00000012311	POLR2E	100	96.190	Otolemur_garnettii
ENSAMXG00000018915	POLR2E	100	96.190	ENSOARG00000010994	POLR2E	100	96.190	Ovis_aries
ENSAMXG00000018915	POLR2E	91	95.812	ENSPPAG00000003145	POLR2E	100	95.812	Pan_paniscus
ENSAMXG00000018915	POLR2E	100	95.714	ENSPPRG00000000777	POLR2E	100	95.714	Panthera_pardus
ENSAMXG00000018915	POLR2E	91	73.438	ENSPTIG00000012237	POLR2E	98	90.132	Panthera_tigris_altaica
ENSAMXG00000018915	POLR2E	100	96.190	ENSPTRG00000010183	POLR2E	100	96.190	Pan_troglodytes
ENSAMXG00000018915	POLR2E	100	96.190	ENSPANG00000018011	POLR2E	100	96.190	Papio_anubis
ENSAMXG00000018915	POLR2E	100	98.095	ENSPKIG00000024123	POLR2E	100	98.095	Paramormyrops_kingsleyae
ENSAMXG00000018915	POLR2E	100	98.095	ENSPKIG00000009607	POLR2E	100	98.095	Paramormyrops_kingsleyae
ENSAMXG00000018915	POLR2E	98	92.683	ENSPSIG00000002870	POLR2E	99	92.683	Pelodiscus_sinensis
ENSAMXG00000018915	POLR2E	100	86.667	ENSPMGG00000014354	polr2eb	100	86.667	Periophthalmus_magnuspinnatus
ENSAMXG00000018915	POLR2E	100	96.190	ENSPEMG00000023261	Polr2e	100	96.190	Peromyscus_maniculatus_bairdii
ENSAMXG00000018915	POLR2E	90	96.296	ENSPCIG00000007312	POLR2E	75	96.296	Phascolarctos_cinereus
ENSAMXG00000018915	POLR2E	100	99.048	ENSPFOG00000005734	polr2eb	100	99.048	Poecilia_formosa
ENSAMXG00000018915	POLR2E	100	99.048	ENSPLAG00000014496	polr2eb	100	99.048	Poecilia_latipinna
ENSAMXG00000018915	POLR2E	100	99.048	ENSPMEG00000008053	polr2eb	100	99.048	Poecilia_mexicana
ENSAMXG00000018915	POLR2E	100	99.048	ENSPREG00000006489	polr2eb	100	99.048	Poecilia_reticulata
ENSAMXG00000018915	POLR2E	100	88.626	ENSPPYG00000009305	POLR2E	100	88.626	Pongo_abelii
ENSAMXG00000018915	POLR2E	53	94.595	ENSPCAG00000016605	POLR2E	100	94.595	Procavia_capensis
ENSAMXG00000018915	POLR2E	100	96.190	ENSPCOG00000014491	POLR2E	100	96.190	Propithecus_coquereli
ENSAMXG00000018915	POLR2E	65	100.000	ENSPVAG00000007718	-	65	100.000	Pteropus_vampyrus
ENSAMXG00000018915	POLR2E	90	98.947	ENSPNYG00000019797	polr2eb	96	98.947	Pundamilia_nyererei
ENSAMXG00000018915	POLR2E	100	99.524	ENSPNAG00000026263	POLR2E	100	99.524	Pygocentrus_nattereri
ENSAMXG00000018915	POLR2E	100	96.190	ENSRNOG00000013545	Polr2e	100	96.190	Rattus_norvegicus
ENSAMXG00000018915	POLR2E	100	96.190	ENSRBIG00000028726	-	100	96.190	Rhinopithecus_bieti
ENSAMXG00000018915	POLR2E	100	71.090	ENSRBIG00000027259	-	100	71.090	Rhinopithecus_bieti
ENSAMXG00000018915	POLR2E	100	96.190	ENSRROG00000043763	POLR2E	100	96.190	Rhinopithecus_roxellana
ENSAMXG00000018915	POLR2E	99	44.495	YBR154C	RPB5	98	44.495	Saccharomyces_cerevisiae
ENSAMXG00000018915	POLR2E	100	96.190	ENSSBOG00000027241	POLR2E	100	96.190	Saimiri_boliviensis_boliviensis
ENSAMXG00000018915	POLR2E	100	96.667	ENSSHAG00000010690	POLR2E	100	96.667	Sarcophilus_harrisii
ENSAMXG00000018915	POLR2E	100	99.524	ENSSFOG00015006073	polr2e	100	99.524	Scleropages_formosus
ENSAMXG00000018915	POLR2E	100	99.524	ENSSMAG00000012782	polr2eb	100	99.524	Scophthalmus_maximus
ENSAMXG00000018915	POLR2E	100	99.524	ENSSDUG00000003352	polr2eb	100	99.524	Seriola_dumerili
ENSAMXG00000018915	POLR2E	100	99.524	ENSSLDG00000004965	polr2eb	100	99.524	Seriola_lalandi_dorsalis
ENSAMXG00000018915	POLR2E	100	96.667	ENSSPUG00000006114	POLR2E	100	96.667	Sphenodon_punctatus
ENSAMXG00000018915	POLR2E	100	99.524	ENSSPAG00000017556	polr2eb	100	99.524	Stegastes_partitus
ENSAMXG00000018915	POLR2E	100	96.190	ENSSSCG00000021472	POLR2E	100	96.190	Sus_scrofa
ENSAMXG00000018915	POLR2E	66	87.857	ENSTGUG00000000922	POLR2E	99	87.857	Taeniopygia_guttata
ENSAMXG00000018915	POLR2E	95	95.980	ENSTRUG00000018238	polr2eb	100	86.667	Takifugu_rubripes
ENSAMXG00000018915	POLR2E	100	99.524	ENSTNIG00000013187	polr2eb	100	99.524	Tetraodon_nigroviridis
ENSAMXG00000018915	POLR2E	100	95.714	ENSTTRG00000001484	POLR2E	100	95.714	Tursiops_truncatus
ENSAMXG00000018915	POLR2E	92	92.784	ENSUAMG00000009166	POLR2E	100	82.857	Ursus_americanus
ENSAMXG00000018915	POLR2E	100	96.190	ENSVVUG00000022818	POLR2E	54	96.190	Vulpes_vulpes
ENSAMXG00000018915	POLR2E	100	96.667	ENSXETG00000003291	polr2e	100	96.667	Xenopus_tropicalis
ENSAMXG00000018915	POLR2E	100	86.190	ENSXCOG00000009197	polr2eb	100	86.190	Xiphophorus_couchianus
ENSAMXG00000018915	POLR2E	100	99.048	ENSXMAG00000026495	polr2eb	100	99.048	Xiphophorus_maculatus