EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000018956 (Gene tree)
Gene ID: 103042034
Gene Symbol: larp6b
Alias: im:7142825|wu:fa55b04|zgc:162969
Full Name: la-related protein 6-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 51423 bases
Position: chr5:16651290-16702712
Accession: 103042034
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030973	La	PF05383.17	5.8e-17	1	1
ENSAMXP00000019518	La	PF05383.17	6.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000038783	-	3318	XM_007240214	ENSAMXP00000030973	480 (aa)	XP_007240276	UPI000BBD8BBF
ENSAMXT00000019518	-	2223	-	ENSAMXP00000019518	530 (aa)	-	W5LI56

Gene Model

Click here to download ENSAMXG00000018956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000018956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000018956	larp6b	90	35.294	ENSAMXG00000036816	-	95	35.730
ENSAMXG00000018956	larp6b	89	39.726	ENSAMXG00000029387	larp6a	64	39.954

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000018956	larp6b	91	34.504	ENSACIG00000008349	-	61	42.958	Amphilophus_citrinellus
ENSAMXG00000018956	larp6b	85	36.867	ENSAOCG00000004646	larp6b	52	49.289	Amphiprion_ocellaris
ENSAMXG00000018956	larp6b	85	36.867	ENSAPEG00000022748	-	52	49.289	Amphiprion_percula
ENSAMXG00000018956	larp6b	87	37.116	ENSATEG00000021222	-	65	49.756	Anabas_testudineus
ENSAMXG00000018956	larp6b	88	36.215	ENSACLG00000009988	larp6b	52	49.091	Astatotilapia_calliptera
ENSAMXG00000018956	larp6b	90	33.480	ENSCING00000008613	-	87	33.700	Ciona_intestinalis
ENSAMXG00000018956	larp6b	53	37.743	ENSCSAVG00000011718	-	87	35.943	Ciona_savignyi
ENSAMXG00000018956	larp6b	100	70.417	ENSDARG00000003968	larp6b	100	74.627	Danio_rerio
ENSAMXG00000018956	larp6b	99	61.777	ENSELUG00000021677	larp6b	99	60.123	Esox_lucius
ENSAMXG00000018956	larp6b	88	35.981	ENSHBUG00000012344	larp6b	51	48.636	Haplochromis_burtoni
ENSAMXG00000018956	larp6b	100	73.333	ENSIPUG00000007609	larp6b	100	73.542	Ictalurus_punctatus
ENSAMXG00000018956	larp6b	80	38.407	ENSLBEG00000016460	-	60	48.276	Labrus_bergylta
ENSAMXG00000018956	larp6b	87	38.663	ENSMAMG00000005509	-	50	54.146	Mastacembelus_armatus
ENSAMXG00000018956	larp6b	88	36.215	ENSMZEG00005024390	larp6b	52	49.091	Maylandia_zebra
ENSAMXG00000018956	larp6b	88	35.849	ENSNBRG00000012748	larp6b	52	48.182	Neolamprologus_brichardi
ENSAMXG00000018956	larp6b	99	56.452	ENSPKIG00000025605	larp6b	97	56.250	Paramormyrops_kingsleyae
ENSAMXG00000018956	larp6b	85	34.314	ENSPLAG00000005133	-	54	48.293	Poecilia_latipinna
ENSAMXG00000018956	larp6b	85	33.578	ENSPMEG00000019947	-	55	48.293	Poecilia_mexicana
ENSAMXG00000018956	larp6b	88	35.402	ENSPNYG00000007025	larp6b	51	46.696	Pundamilia_nyererei
ENSAMXG00000018956	larp6b	99	81.837	ENSPNAG00000023854	larp6b	99	81.837	Pygocentrus_nattereri
ENSAMXG00000018956	larp6b	61	49.083	ENSSPAG00000014320	-	62	50.917	Stegastes_partitus
ENSAMXG00000018956	larp6b	85	33.578	ENSXCOG00000018917	-	52	48.780	Xiphophorus_couchianus
ENSAMXG00000018956	larp6b	85	33.578	ENSXMAG00000025734	-	53	48.780	Xiphophorus_maculatus