EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019140 (Gene tree)
Gene ID: 103025554
Gene Symbol: cnot6a
Alias: cnot6|wu:fa03c11|wu:fc17f01|zgc:65822
Full Name: CCR4-NOT transcription complex subunit 6
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9280 bases
Position: chr14:10165866-10175145
Accession: 103025554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000019710	Exo_endo_phos	PF03372.23	1.3e-19	1	1
ENSAMXP00000032938	Exo_endo_phos	PF03372.23	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000053777	-	1659	-	ENSAMXP00000032938	552 (aa)	-	-
ENSAMXT00000019710	-	1860	XM_007259553	ENSAMXP00000019710	557 (aa)	XP_007259615	W5LIP8

Gene Model

Click here to download ENSAMXG00000019140's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019140	cnot6a	100	73.968	ENSAMXG00000008943	cnot6l	98	73.968
ENSAMXG00000019140	cnot6a	100	89.606	ENSAMXG00000034694	cnot6b	100	89.606

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019140	cnot6a	100	86.380	ENSG00000113300	CNOT6	100	92.105	Homo_sapiens
ENSAMXG00000019140	cnot6a	100	91.234	ENSAPOG00000009994	cnot6b	100	91.234	Acanthochromis_polyacanthus
ENSAMXG00000019140	cnot6a	100	86.607	ENSAMEG00000000949	CNOT6	99	86.607	Ailuropoda_melanoleuca
ENSAMXG00000019140	cnot6a	100	90.143	ENSACIG00000016566	cnot6b	100	90.143	Amphilophus_citrinellus
ENSAMXG00000019140	cnot6a	100	91.234	ENSAOCG00000006893	cnot6b	100	91.234	Amphiprion_ocellaris
ENSAMXG00000019140	cnot6a	100	91.234	ENSAPEG00000016949	cnot6b	100	91.234	Amphiprion_percula
ENSAMXG00000019140	cnot6a	100	89.624	ENSATEG00000007862	cnot6b	100	89.624	Anabas_testudineus
ENSAMXG00000019140	cnot6a	100	87.993	ENSAPLG00000012715	CNOT6	99	87.993	Anas_platyrhynchos
ENSAMXG00000019140	cnot6a	100	86.738	ENSACAG00000016548	CNOT6	100	86.738	Anolis_carolinensis
ENSAMXG00000019140	cnot6a	100	86.559	ENSANAG00000030436	CNOT6	96	86.559	Aotus_nancymaae
ENSAMXG00000019140	cnot6a	100	89.982	ENSACLG00000008279	cnot6b	100	90.161	Astatotilapia_calliptera
ENSAMXG00000019140	cnot6a	100	86.738	ENSBTAG00000017362	CNOT6	100	86.738	Bos_taurus
ENSAMXG00000019140	cnot6a	100	86.738	ENSCJAG00000009795	CNOT6	100	86.738	Callithrix_jacchus
ENSAMXG00000019140	cnot6a	100	86.918	ENSCAFG00000000464	CNOT6	100	86.918	Canis_familiaris
ENSAMXG00000019140	cnot6a	100	86.918	ENSCAFG00020002441	CNOT6	100	86.918	Canis_lupus_dingo
ENSAMXG00000019140	cnot6a	100	86.559	ENSCHIG00000019100	CNOT6	100	86.559	Capra_hircus
ENSAMXG00000019140	cnot6a	100	85.484	ENSTSYG00000003982	CNOT6	100	85.484	Carlito_syrichta
ENSAMXG00000019140	cnot6a	100	82.079	ENSCPOG00000035657	CNOT6	100	82.079	Cavia_porcellus
ENSAMXG00000019140	cnot6a	100	82.079	ENSCCAG00000033670	CNOT6	100	82.079	Cebus_capucinus
ENSAMXG00000019140	cnot6a	100	86.380	ENSCATG00000042014	CNOT6	100	86.380	Cercocebus_atys
ENSAMXG00000019140	cnot6a	100	85.484	ENSCLAG00000010489	CNOT6	100	85.484	Chinchilla_lanigera
ENSAMXG00000019140	cnot6a	100	86.380	ENSCSAG00000008165	CNOT6	100	86.380	Chlorocebus_sabaeus
ENSAMXG00000019140	cnot6a	100	86.201	ENSCHOG00000009680	CNOT6	100	86.201	Choloepus_hoffmanni
ENSAMXG00000019140	cnot6a	100	87.993	ENSCPBG00000008908	CNOT6	100	87.993	Chrysemys_picta_bellii
ENSAMXG00000019140	cnot6a	100	86.559	ENSCANG00000026756	CNOT6	100	86.559	Colobus_angolensis_palliatus
ENSAMXG00000019140	cnot6a	100	85.458	ENSCGRG00001011452	Cnot6	100	85.458	Cricetulus_griseus_chok1gshd
ENSAMXG00000019140	cnot6a	100	83.154	ENSCGRG00000010407	Cnot6	100	83.154	Cricetulus_griseus_crigri
ENSAMXG00000019140	cnot6a	100	90.698	ENSCSEG00000010939	cnot6b	100	90.698	Cynoglossus_semilaevis
ENSAMXG00000019140	cnot6a	100	89.088	ENSCVAG00000010538	cnot6b	100	89.088	Cyprinodon_variegatus
ENSAMXG00000019140	cnot6a	100	86.380	ENSDARG00000101072	cnot6b	100	86.380	Danio_rerio
ENSAMXG00000019140	cnot6a	100	93.716	ENSDARG00000008255	cnot6a	100	93.716	Danio_rerio
ENSAMXG00000019140	cnot6a	100	87.097	ENSDNOG00000041644	CNOT6	100	87.097	Dasypus_novemcinctus
ENSAMXG00000019140	cnot6a	100	77.957	ENSDORG00000001708	Cnot6	100	77.957	Dipodomys_ordii
ENSAMXG00000019140	cnot6a	100	69.052	ENSETEG00000006975	CNOT6	100	69.052	Echinops_telfairi
ENSAMXG00000019140	cnot6a	100	86.559	ENSEASG00005012794	-	100	86.559	Equus_asinus_asinus
ENSAMXG00000019140	cnot6a	90	82.600	ENSEASG00005012957	-	99	82.600	Equus_asinus_asinus
ENSAMXG00000019140	cnot6a	100	81.867	ENSECAG00000012704	-	99	81.867	Equus_caballus
ENSAMXG00000019140	cnot6a	100	87.097	ENSECAG00000019325	CNOT6	100	87.097	Equus_caballus
ENSAMXG00000019140	cnot6a	100	85.484	ENSEEUG00000015382	CNOT6	100	85.484	Erinaceus_europaeus
ENSAMXG00000019140	cnot6a	100	87.302	ENSELUG00000015981	cnot6b	99	87.302	Esox_lucius
ENSAMXG00000019140	cnot6a	100	89.048	ENSELUG00000024580	cnot6a	100	89.048	Esox_lucius
ENSAMXG00000019140	cnot6a	100	87.276	ENSFCAG00000001881	CNOT6	100	87.276	Felis_catus
ENSAMXG00000019140	cnot6a	100	88.172	ENSFALG00000007699	CNOT6	100	88.172	Ficedula_albicollis
ENSAMXG00000019140	cnot6a	100	85.125	ENSFDAG00000001999	CNOT6	100	85.125	Fukomys_damarensis
ENSAMXG00000019140	cnot6a	95	74.317	ENSFHEG00000013756	cnot6b	96	90.476	Fundulus_heteroclitus
ENSAMXG00000019140	cnot6a	95	91.115	ENSGMOG00000009767	cnot6b	99	91.115	Gadus_morhua
ENSAMXG00000019140	cnot6a	100	87.993	ENSGALG00000034316	CNOT6	100	87.993	Gallus_gallus
ENSAMXG00000019140	cnot6a	100	88.730	ENSGAFG00000008525	cnot6b	100	88.730	Gambusia_affinis
ENSAMXG00000019140	cnot6a	95	89.414	ENSGACG00000018046	cnot6b	99	89.414	Gasterosteus_aculeatus
ENSAMXG00000019140	cnot6a	100	72.809	ENSGAGG00000012176	CNOT6	100	72.809	Gopherus_agassizii
ENSAMXG00000019140	cnot6a	100	86.380	ENSGGOG00000003675	CNOT6	100	86.380	Gorilla_gorilla
ENSAMXG00000019140	cnot6a	100	90.161	ENSHBUG00000002819	cnot6b	100	90.340	Haplochromis_burtoni
ENSAMXG00000019140	cnot6a	100	85.305	ENSHGLG00000017756	CNOT6	100	85.305	Heterocephalus_glaber_female
ENSAMXG00000019140	cnot6a	100	85.305	ENSHGLG00100005747	CNOT6	100	85.305	Heterocephalus_glaber_male
ENSAMXG00000019140	cnot6a	100	89.606	ENSHCOG00000016176	cnot6b	100	89.785	Hippocampus_comes
ENSAMXG00000019140	cnot6a	100	87.455	ENSIPUG00000017482	cnot6b	100	87.455	Ictalurus_punctatus
ENSAMXG00000019140	cnot6a	100	95.512	ENSIPUG00000019831	cnot6a	100	95.512	Ictalurus_punctatus
ENSAMXG00000019140	cnot6a	100	86.559	ENSSTOG00000002803	CNOT6	100	86.559	Ictidomys_tridecemlineatus
ENSAMXG00000019140	cnot6a	100	85.842	ENSJJAG00000012296	Cnot6	100	85.842	Jaculus_jaculus
ENSAMXG00000019140	cnot6a	100	89.267	ENSKMAG00000004640	cnot6b	100	89.267	Kryptolebias_marmoratus
ENSAMXG00000019140	cnot6a	100	89.803	ENSLBEG00000027917	cnot6b	100	89.982	Labrus_bergylta
ENSAMXG00000019140	cnot6a	100	93.011	ENSLOCG00000010102	cnot6b	99	93.011	Lepisosteus_oculatus
ENSAMXG00000019140	cnot6a	100	87.455	ENSLAFG00000016742	CNOT6	100	87.455	Loxodonta_africana
ENSAMXG00000019140	cnot6a	100	86.380	ENSMFAG00000030867	CNOT6	100	86.380	Macaca_fascicularis
ENSAMXG00000019140	cnot6a	100	86.380	ENSMMUG00000018690	CNOT6	100	86.380	Macaca_mulatta
ENSAMXG00000019140	cnot6a	100	86.380	ENSMNEG00000038565	CNOT6	100	86.380	Macaca_nemestrina
ENSAMXG00000019140	cnot6a	100	86.380	ENSMLEG00000010555	CNOT6	100	86.380	Mandrillus_leucophaeus
ENSAMXG00000019140	cnot6a	100	91.413	ENSMAMG00000007515	cnot6b	100	91.413	Mastacembelus_armatus
ENSAMXG00000019140	cnot6a	100	89.982	ENSMZEG00005012899	cnot6b	100	90.161	Maylandia_zebra
ENSAMXG00000019140	cnot6a	100	85.842	ENSMAUG00000019798	Cnot6	100	85.842	Mesocricetus_auratus
ENSAMXG00000019140	cnot6a	98	78.165	ENSMICG00000028378	-	99	78.165	Microcebus_murinus
ENSAMXG00000019140	cnot6a	100	84.946	ENSMICG00000013018	-	100	84.946	Microcebus_murinus
ENSAMXG00000019140	cnot6a	100	85.842	ENSMOCG00000021662	Cnot6	100	85.842	Microtus_ochrogaster
ENSAMXG00000019140	cnot6a	100	89.048	ENSMMOG00000003227	cnot6b	100	89.048	Mola_mola
ENSAMXG00000019140	cnot6a	100	87.276	ENSMODG00000003979	CNOT6	100	87.276	Monodelphis_domestica
ENSAMXG00000019140	cnot6a	100	91.234	ENSMALG00000014251	cnot6b	100	91.234	Monopterus_albus
ENSAMXG00000019140	cnot6a	100	86.022	MGP_CAROLIEiJ_G0016277	Cnot6	100	86.022	Mus_caroli
ENSAMXG00000019140	cnot6a	100	86.022	ENSMUSG00000020362	Cnot6	100	86.022	Mus_musculus
ENSAMXG00000019140	cnot6a	100	86.022	MGP_PahariEiJ_G0017413	Cnot6	100	86.022	Mus_pahari
ENSAMXG00000019140	cnot6a	100	86.022	MGP_SPRETEiJ_G0017122	Cnot6	100	86.022	Mus_spretus
ENSAMXG00000019140	cnot6a	100	87.276	ENSMPUG00000000587	CNOT6	96	87.276	Mustela_putorius_furo
ENSAMXG00000019140	cnot6a	100	85.258	ENSMLUG00000010257	CNOT6	100	85.258	Myotis_lucifugus
ENSAMXG00000019140	cnot6a	100	85.484	ENSNGAG00000008269	Cnot6	100	85.484	Nannospalax_galili
ENSAMXG00000019140	cnot6a	100	90.161	ENSNBRG00000010798	cnot6b	100	90.340	Neolamprologus_brichardi
ENSAMXG00000019140	cnot6a	100	85.637	ENSNLEG00000002322	CNOT6	100	85.637	Nomascus_leucogenys
ENSAMXG00000019140	cnot6a	81	84.186	ENSMEUG00000000025	CNOT6	81	84.186	Notamacropus_eugenii
ENSAMXG00000019140	cnot6a	88	87.143	ENSOPRG00000008244	-	88	87.143	Ochotona_princeps
ENSAMXG00000019140	cnot6a	100	85.305	ENSODEG00000007041	CNOT6	100	85.305	Octodon_degus
ENSAMXG00000019140	cnot6a	75	91.253	ENSONIG00000013027	cnot6b	99	91.253	Oreochromis_niloticus
ENSAMXG00000019140	cnot6a	100	86.201	ENSOANG00000010226	CNOT6	100	86.201	Ornithorhynchus_anatinus
ENSAMXG00000019140	cnot6a	100	85.357	ENSOCUG00000011083	CNOT6	100	85.357	Oryctolagus_cuniculus
ENSAMXG00000019140	cnot6a	100	89.982	ENSORLG00000005059	cnot6b	100	89.982	Oryzias_latipes
ENSAMXG00000019140	cnot6a	100	89.982	ENSORLG00020012784	cnot6b	100	89.982	Oryzias_latipes_hni
ENSAMXG00000019140	cnot6a	94	89.293	ENSORLG00015022658	cnot6b	98	89.293	Oryzias_latipes_hsok
ENSAMXG00000019140	cnot6a	100	90.519	ENSOMEG00000005295	cnot6b	100	90.519	Oryzias_melastigma
ENSAMXG00000019140	cnot6a	94	85.905	ENSOGAG00000032470	CNOT6	100	85.905	Otolemur_garnettii
ENSAMXG00000019140	cnot6a	97	86.004	ENSOARG00000001003	CNOT6	100	86.004	Ovis_aries
ENSAMXG00000019140	cnot6a	100	86.380	ENSPPAG00000032253	CNOT6	100	86.380	Pan_paniscus
ENSAMXG00000019140	cnot6a	100	87.097	ENSPPRG00000011912	CNOT6	100	87.097	Panthera_pardus
ENSAMXG00000019140	cnot6a	100	87.097	ENSPTIG00000016794	CNOT6	100	87.097	Panthera_tigris_altaica
ENSAMXG00000019140	cnot6a	100	86.380	ENSPTRG00000017636	CNOT6	100	86.380	Pan_troglodytes
ENSAMXG00000019140	cnot6a	100	86.380	ENSPANG00000016191	CNOT6	100	86.380	Papio_anubis
ENSAMXG00000019140	cnot6a	100	91.039	ENSPKIG00000021368	cnot6b	100	91.039	Paramormyrops_kingsleyae
ENSAMXG00000019140	cnot6a	98	87.890	ENSPSIG00000017307	CNOT6	100	87.890	Pelodiscus_sinensis
ENSAMXG00000019140	cnot6a	100	90.502	ENSPMGG00000011238	cnot6b	100	90.502	Periophthalmus_magnuspinnatus
ENSAMXG00000019140	cnot6a	100	85.305	ENSPEMG00000000627	Cnot6	100	85.305	Peromyscus_maniculatus_bairdii
ENSAMXG00000019140	cnot6a	100	87.276	ENSPCIG00000020319	CNOT6	99	87.276	Phascolarctos_cinereus
ENSAMXG00000019140	cnot6a	100	89.088	ENSPFOG00000006291	cnot6b	100	89.088	Poecilia_formosa
ENSAMXG00000019140	cnot6a	100	86.022	ENSPLAG00000008266	cnot6b	100	86.022	Poecilia_latipinna
ENSAMXG00000019140	cnot6a	100	89.267	ENSPMEG00000009091	cnot6b	100	89.267	Poecilia_mexicana
ENSAMXG00000019140	cnot6a	100	88.530	ENSPREG00000003713	cnot6b	100	88.530	Poecilia_reticulata
ENSAMXG00000019140	cnot6a	100	86.380	ENSPPYG00000016137	CNOT6	100	86.380	Pongo_abelii
ENSAMXG00000019140	cnot6a	71	83.895	ENSPCAG00000005599	-	71	83.895	Procavia_capensis
ENSAMXG00000019140	cnot6a	100	81.004	ENSPCOG00000017359	CNOT6	100	81.720	Propithecus_coquereli
ENSAMXG00000019140	cnot6a	100	82.975	ENSPVAG00000003069	CNOT6	100	82.975	Pteropus_vampyrus
ENSAMXG00000019140	cnot6a	100	89.803	ENSPNYG00000000321	cnot6b	100	89.982	Pundamilia_nyererei
ENSAMXG00000019140	cnot6a	100	89.785	ENSPNAG00000028816	cnot6b	100	89.785	Pygocentrus_nattereri
ENSAMXG00000019140	cnot6a	100	98.923	ENSPNAG00000029586	cnot6a	100	98.923	Pygocentrus_nattereri
ENSAMXG00000019140	cnot6a	100	85.125	ENSRNOG00000054891	Cnot6	100	85.125	Rattus_norvegicus
ENSAMXG00000019140	cnot6a	100	86.201	ENSRBIG00000004309	CNOT6	100	86.201	Rhinopithecus_bieti
ENSAMXG00000019140	cnot6a	100	86.201	ENSRROG00000035378	CNOT6	100	86.201	Rhinopithecus_roxellana
ENSAMXG00000019140	cnot6a	100	86.738	ENSSBOG00000030494	CNOT6	100	86.738	Saimiri_boliviensis_boliviensis
ENSAMXG00000019140	cnot6a	100	87.276	ENSSHAG00000017436	CNOT6	100	87.276	Sarcophilus_harrisii
ENSAMXG00000019140	cnot6a	100	92.294	ENSSFOG00015022383	cnot6a	96	92.294	Scleropages_formosus
ENSAMXG00000019140	cnot6a	100	91.577	ENSSFOG00015015133	CNOT6	100	91.577	Scleropages_formosus
ENSAMXG00000019140	cnot6a	100	89.624	ENSSMAG00000003084	cnot6b	100	89.624	Scophthalmus_maximus
ENSAMXG00000019140	cnot6a	100	91.234	ENSSDUG00000004151	cnot6b	100	91.234	Seriola_dumerili
ENSAMXG00000019140	cnot6a	100	91.055	ENSSLDG00000004448	cnot6b	100	91.234	Seriola_lalandi_dorsalis
ENSAMXG00000019140	cnot6a	64	68.802	ENSSARG00000012650	-	100	68.802	Sorex_araneus
ENSAMXG00000019140	cnot6a	100	88.172	ENSSPUG00000007893	CNOT6	100	88.172	Sphenodon_punctatus
ENSAMXG00000019140	cnot6a	100	91.413	ENSSPAG00000000149	cnot6b	100	91.413	Stegastes_partitus
ENSAMXG00000019140	cnot6a	100	86.738	ENSSSCG00000014009	CNOT6	100	86.738	Sus_scrofa
ENSAMXG00000019140	cnot6a	100	87.814	ENSTGUG00000001119	CNOT6	100	87.814	Taeniopygia_guttata
ENSAMXG00000019140	cnot6a	100	87.814	ENSTRUG00000002818	cnot6b	100	87.814	Takifugu_rubripes
ENSAMXG00000019140	cnot6a	100	88.172	ENSTNIG00000004443	cnot6b	99	88.172	Tetraodon_nigroviridis
ENSAMXG00000019140	cnot6a	76	79.104	ENSTBEG00000017094	-	87	79.104	Tupaia_belangeri
ENSAMXG00000019140	cnot6a	100	86.559	ENSTTRG00000009363	CNOT6	100	86.559	Tursiops_truncatus
ENSAMXG00000019140	cnot6a	77	85.116	ENSUAMG00000004579	CNOT6	99	76.143	Ursus_americanus
ENSAMXG00000019140	cnot6a	100	82.735	ENSUMAG00000024577	CNOT6	100	82.735	Ursus_maritimus
ENSAMXG00000019140	cnot6a	83	89.189	ENSVPAG00000003593	CNOT6	83	89.189	Vicugna_pacos
ENSAMXG00000019140	cnot6a	100	86.918	ENSVVUG00000026940	CNOT6	100	86.918	Vulpes_vulpes
ENSAMXG00000019140	cnot6a	100	86.380	ENSXCOG00000003360	cnot6b	100	86.380	Xiphophorus_couchianus
ENSAMXG00000019140	cnot6a	100	89.267	ENSXMAG00000008730	cnot6b	100	89.267	Xiphophorus_maculatus